BAC Information

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BAC

Clone NameB6Ng01-062N09
Chromosome2 (Build37)
Map Location 6,891,342 - 7,015,070
singlet/doubletdoublet
Overlap genenone
Upstream geneUpf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N09.bB6Ng01-062N09.g
ACCDH883106DH883107
length1,1331,104
definitionDH883106|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N09, 5' end.DH883107|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,013,921 - 7,015,070)(6,891,342 - 6,892,462)
sequence
gaattcaggtcctcatgctcactaggcaagaacataattaaccaagttgt
ctccctactcctatatgagctttctgcatatcgtgattcaactccaagag
tggaagccaaattaacagaaaacaaacggcttcttgttatttacaggaag
tctaaagaagtagggagagggatggagaaacagggaaacatgttgccata
gtgaccaggtggtctaccatctccctagagaggtggaagagcaaaatgta
ttctggagttaagcatagtgaaaaagaaaaatatcaaagtgcagtggatg
taaacacactcccccatgcctctgaagaaaacatttacagcttactccct
tcaattattattcacgtataaggattaaggagtaggaatgtggttttgtc
tgttttgagacagagtgtcactgtgcaatgcaggctggcctaggacacgt
attacccctgtgcttaccacccccaactagaattatgtcattaaaacaaa
gccatgtggaaacacagacacacacaaaggaaagcattagaaagtgagcc
ggagaggagtgggccaaacacttgcctttagactgaactcaacacttcag
aaaagaacttcaaatctacgagtgaataagccttgtagaagagcactaga
ttaagtgggatgagaactgtgtggatttgtgataactttaatatgtgtga
aatattcagttataaaaagttctccctccctgcatttctaattataaact
ggcatattcatttaaacattgtcagcaagaaatcagaattcttgctttct
ggtggttcagcaagaagaaagcccttaaggtctgataccacacacacaca
cgaggaaaaaaaatcttatttaaaaggttagatcaagcctttctctaaaa
caaagtccttattgccaacctaatgccaaagacatagggcttttttcatg
ctagtataattgatttccatctgtcttcttatttatagtgttgtgatgtt
gtttgaggaaggtctctcatgaatcagagtgctgtgagcatcccctaccc
ctccgatgctgggtctgcagaggggaccaccatccaggcattgtggtgct
ccgagcatgctagcaagcactctcaatgtacta

gaattccctcctctgtggaggaaagttttggtgaaacaaacctggaaagg
tttgattaacagaataaccaccaccaaagtcatgactagcaaagcaaatt
ccttttttccagaggaaggatgcttgtaccttaggcatgctcattttcct
aagaatttaaactgtaagagccactgtcttgaaggagagtccaaggtcaa
ggtgggagccaccaccatttctgtctggtagaggctgctgagggtagaat
gcacccaaggaacccaagacagggaaagaaagggaggcacagcagacaga
gggtttctgggatggaaccacatgatgcaagtcatgaagagacggaccac
gatgactcctacgtctgtgagatgctctagattaacaccgagttgtctca
tgctcctgtctggtttggggcatggggtggtctttgaaggccacaatctg
gatcagagtcatcatgtcgcttaggccgtccacccaatactgtgacataa
aggacaaaccattgccacctgagacttggcttccagtgtcctctgtcaca
gggagagttcctcagagggcctccttaaacttgggcctgaccaacagtct
gtacaaaaaaaaaatattgagttcaaaggtgttctttttttttccttctt
tacaaaatgtccagaaattatatcataactaactctgatctcagggcaga
aagctcttagtaggcaaccatagaaaaagagagaaataaaggttgcattg
atgaacttatttttttggttcttgtttatttcttttttatttttcagaga
agtaacccctagataataaaacattctctttccctaagtgcaaaaagcct
actctcttgagccagttgagaagctctgtaggcaaggcatttgccatgta
aacctattggcttgaattccaacctcagagccaacattaagatagaagga
gagcatgactctcatacagttgtctcctgctctcctcatgcatacgtggc
ataacttgccccaccaaacatgtttcatcaacaccacacacagatttgta
aagctagttctttttacattagtgtaattaatcggcttttctaagtccag
aaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7013921_7015070
seq2: B6Ng01-062N09.b_46_1178 (reverse)

seq1  TAGTACAGTTGAGAGTGCTTGCCTAGCATGCTCGGAGCACCACAGATGCC  50
      ||||||| ||||||||||||| |||||||||||||||||||||| |||||
seq2  TAGTACA-TTGAGAGTGCTTG-CTAGCATGCTCGGAGCACCACA-ATGCC  47

seq1  TGTGATGGTGGTTCACCTCTGCAGACCCAGCATCGGAGGGGTAGGGGATG  100
      || |||||||| || |||||||||||||||||||||||||||||||||||
seq2  TG-GATGGTGG-TCCCCTCTGCAGACCCAGCATCGGAGGGGTAGGGGATG  95

seq1  CTCACAGCCACTCTGGATTCATGAGAGACCCTGCCTCAAAACAACATCAA  150
      ||||||| |||||| ||||||||||||| ||| |||| |||||||||| |
seq2  CTCACAG-CACTCT-GATTCATGAGAGA-CCTTCCTC-AAACAACATC-A  140

seq1  CAACAACTAATAAAATAAAGAAGACAAGATGGAAATCAATTATACTAGCA  200
      |||| ||| |||||   |||||||| ||||||||||||||||||||||||
seq2  CAAC-ACT-ATAAA--TAAGAAGAC-AGATGGAAATCAATTATACTAGCA  185

seq1  TGAAAAAAGCCCTATGTCTTTGGCATTAGGTTGGCAATAAGGACTTTGTT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAAAAAGCCCTATGTCTTTGGCATTAGGTTGGCAATAAGGACTTTG-T  234

seq1  TTTAGAGAAAGGCTTGATCTAACCTTTTAAATAAGATTTTTTTTTCCTCG  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAGAGAAAGGCTTGATCTAACCTTTTAAATAAGA-TTTTTTTTCCTCG  283

seq1  TGTGTGTGTGTGGTATCAGACCTTAAGGGCTTTCTTCTTGCTGAACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGGTATCAGACCTTAAGGGCTTTCTTCTTGCTGAACCACC  333

seq1  AGAAAGCAAGAATTCTGATTTCTTGCTGACAATGTTTAAATGAATATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAGAATTCTGATTTCTTGCTGACAATGTTTAAATGAATATGCC  383

seq1  AGTTTATAATTAGAAATGCAGGGAGGGAGAACTTTTTATAACTGAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAATTAGAAATGCAGGGAGGGAGAACTTTTTATAACTGAATATT  433

seq1  TCACACATATTAAAGTTATCACAAATCCACACAGTTCTCATCCCACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATATTAAAGTTATCACAAATCCACACAGTTCTCATCCCACTTAA  483

seq1  TCTAGTGCTCTTCTACAAGGCTTATTCACTCGTAGATTTGAAGTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCTCTTCTACAAGGCTTATTCACTCGTAGATTTGAAGTTCTTTT  533

seq1  CTGAAGTGTTGAGTTCAGTCTAAAGGCAAGTGTTTGGCCCACTCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGTTGAGTTCAGTCTAAAGGCAAGTGTTTGGCCCACTCCTCTCC  583

seq1  GGCTCACTTTCTAATGCTTTCCTTTGTGTGTGTCTGTGTTTCCACATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTTTCTAATGCTTTCCTTTGTGTGTGTCTGTGTTTCCACATGGC  633

seq1  TTTGTTTTAATGACATAATTCTAGTTGGGGGTGGTAAGCACAGGGGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAATGACATAATTCTAGTTGGGGGTGGTAAGCACAGGGGTAAT  683

seq1  ACGTGTCCTAGGCCAGCCTGCATTGCACAGTGACACTCTGTCTCAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCCTAGGCCAGCCTGCATTGCACAGTGACACTCTGTCTCAAAACA  733

seq1  GACAAAACCACATTCCTACTCCTTAATCCTTATACGTGAATAATAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACCACATTCCTACTCCTTAATCCTTATACGTGAATAATAATTGA  783

seq1  AGGGAGTAAGCTGTAAATGTTTTCTTCAGAGGCATGGGGGAGTGTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAAGCTGTAAATGTTTTCTTCAGAGGCATGGGGGAGTGTGTTTA  833

seq1  CATCCACTGCACTTTGATATTTTTCTTTTTCACTATGCTTAACTCCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTGCACTTTGATATTTTTCTTTTTCACTATGCTTAACTCCAGAA  883

seq1  TACATTTTGCTCTTCCACCTCTCTAGGGAGATGGTAGACCACCTGGTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGCTCTTCCACCTCTCTAGGGAGATGGTAGACCACCTGGTCAC  933

seq1  TATGGCAACATGTTTCCCTGTTTCTCCATCCCTCTCCCTACTTCTTTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACATGTTTCCCTGTTTCTCCATCCCTCTCCCTACTTCTTTAGA  983

seq1  CTTCCTGTAAATAACAAGAAGCCGTTTGTTTTCTGTTAATTTGGCTTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTAAATAACAAGAAGCCGTTTGTTTTCTGTTAATTTGGCTTCCA  1033

seq1  CTCTTGGAGTTGAATCACGATATGCAGAAAGCTCATATAGGAGTAGGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAGTTGAATCACGATATGCAGAAAGCTCATATAGGAGTAGGGAG  1083

seq1  ACAACTTGGTTAATTATGTTCTTGCCTAGTGAGCATGAGGACCTGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTGGTTAATTATGTTCTTGCCTAGTGAGCATGAGGACCTGAATTC  1133


seq1: chr2_6891342_6892462
seq2: B6Ng01-062N09.g_69_1172

seq1  GAATTCCCTCCTCTGTGGAGGAAAGTTTTGGTGAAACAAACCTGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTCTGTGGAGGAAAGTTTTGGTGAAACAAACCTGGAAAGG  50

seq1  TTTGATTAACAGAATAACCACCACCAAAGTCATGACTAGCAAAGCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAACAGAATAACCACCACCAAAGTCATGACTAGCAAAGCAAATT  100

seq1  CCTTTTTTCCAGAGGAAGGATGCTTGTACCTTAGGCATGCTCATTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTCCAGAGGAAGGATGCTTGTACCTTAGGCATGCTCATTTTCCT  150

seq1  AAGAATTTAAACTGTAAGAGCCACTGTCTTGAAGGAGAGTCCAAGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTAAACTGTAAGAGCCACTGTCTTGAAGGAGAGTCCAAGGTCAA  200

seq1  GGTGGGAGCCACCACCATTTCTGTCTGGTAGAGGCTGCTGAGGGTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGCCACCACCATTTCTGTCTGGTAGAGGCTGCTGAGGGTAGAAT  250

seq1  GCACCCAAGGAACCCAAGACAGGGAAAGAAAGGGAGGCACAGCAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAGGAACCCAAGACAGGGAAAGAAAGGGAGGCACAGCAGACAGA  300

seq1  GGGTTTCTGGGATGGAACCACATGATGCAAGTCATGAAGAGACGGACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGGGATGGAACCACATGATGCAAGTCATGAAGAGACGGACCAC  350

seq1  GATGACTCCTACGTCTGTGAGATGCTCTAGATTAACACCGAGTTGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCCTACGTCTGTGAGATGCTCTAGATTAACACCGAGTTGTCTCA  400

seq1  TGCTCCTGTCTGGTTTGGGGCATGGGGTGGTCTTTGAAGGCCACAATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTCTGGTTTGGGGCATGGGGTGGTCTTTGAAGGCCACAATCTG  450

seq1  GATCAGAGTCATCATGTCGCTTAGGCCGTCCACCCAATACTGTGACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGTCATCATGTCGCTTAGGCCGTCCACCCAATACTGTGACATAA  500

seq1  AGGACAAACCATTGCCACCTGAGACTTGGCTTCCAGTGTCCTCTGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAACCATTGCCACCTGAGACTTGGCTTCCAGTGTCCTCTGTCACA  550

seq1  GGGAGAGTTCCTCAGAGGGCCTCCTTAAACTTGGGCCTGACCAACAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTTCCTCAGAGGGCCTCCTTAAACTTGGGCCTGACCAACAGTCT  600

seq1  GTACAAAAAAAAAATATTGAGTTCAAAGGTGTTCTTTTTTTTTCCTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAAAAAAATATTGAGTTCAAAGGTGTTCTTTTTTTTTCCTTCTT  650

seq1  TACAAAATGTCCAGAAATTATATCATAACTAACTCTGACCTCAGGGCAGA  700
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACAAAATGTCCAGAAATTATATCATAACTAACTCTGATCTCAGGGCAGA  700

seq1  AAGCTCTTAGTAGGCAACCATAGAAAAAGAGAGAAATAAAGGTTGCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTAGTAGGCAACCATAGAAAAAGAGAGAAATAAAGGTTGCATTG  750

seq1  ATGAACTTATTTTTTTGGTTCTTGTTTATTTCTTTTTTATTTTTCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTATTTTTTTGGTTCTTGTTTATTTCTTTTTTATTTTTCAGAGA  800

seq1  AGTAACCCCTAGATAATAAAACATTCTCTTTCCCTAAGTGCAAAAAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAACCCCTAGATAATAAAACATTCTCTTTCCCTAAGTGCAAAAAGCCT  850

seq1  ACTC-CTTGAGCCAG-TGAGAAGGCTCTGTAGGCAAAGGCATTTGCCATG  898
      |||| |||||||||| |||||| ||||||||||| |||||||||||||||
seq2  ACTCTCTTGAGCCAGTTGAGAA-GCTCTGTAGGC-AAGGCATTTGCCATG  898

seq1  TAAACCTATTGGCTTGAATTCCAACCCCAGAGCCAACATTAAGATAGAAG  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAACCTATTGGCTTGAATTCCAACCTCAGAGCCAACATTAAGATAGAAG  948

seq1  GAGAGGCATGACTC-CATACAGTTGTTCTCTGCCCTCCTCATGCATATCG  997
      |||| ||||||||| |||||||||||   |||| ||||||||||||| ||
seq2  GAGA-GCATGACTCTCATACAGTTGTCTCCTGCTCTCCTCATGCATA-CG  996

seq1  TGGCATAAACTTGCACACACAAACATGTATACACAACAACAACAACAACA  1047
      |||||| ||||||| |   ||||||||| |   || |||| || |||   
seq2  TGGCAT-AACTTGCCCCACCAAACATGTTT---CATCAAC-ACCACACAC  1041

seq1  AGATTTGTTAAAGCTAGCTTCTTTTTTACACTAAGTGTTAATTTTAAATC  1097
      ||||||| ||||||||| ||| |||||||| | |||| |||||   ||||
seq2  AGATTTG-TAAAGCTAG-TTC-TTTTTACA-TTAGTG-TAATT---AATC  1083

seq1  GGCTTTTCTATAGTCACAAGAAGA  1121
      |||||||||| |||  | ||||||
seq2  GGCTTTTCTA-AGT--CCAGAAGA  1104


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