BAC Information

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BAC

Clone NameB6Ng01-062O24
Chromosome2 (Build37)
Map Location 41,549,881 - 41,680,879
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O24.bB6Ng01-062O24.g
ACCDH883181DH883182
length1,1911,074
definitionDH883181|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O24, 5' end.DH883182|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,679,706 - 41,680,879)(41,549,881 - 41,550,509)
sequence
gaattccaaactgactccatttttgattaatttagtataagccctaattt
aatgatttcctaacccagtaaaatactgtgacattgagaataaaccatcc
cagatgatctgactatgttgtttaaattcctttgacttccctatatattt
ctcactgaaactgaaaaaaaaaataagttagtagatatgatttcatcaat
aggcattgaatattttaggagatcaaaagtgaagaagatatctgtgattt
tcttaataatgattgttatatgttaaaaaaatacattgctattaataaaa
atggaactacgtggaagggatcagcagaacggacaacagattataaaatg
caaatgtattaatatctagactccataaagaaatatgaaagaaagccaga
gaaaacaaagcttacaatgtctaaatgagctaaatagatgaacagacagc
tctcatagaggaaacacaaatgacaaacagcccaaaaatattcaaaatcc
ctagcatgcattcatgtaggaaaatttcagagagaaggtaaataaaataa
cattttaaagtgtgcatctctgttttggatgcatacatttacagtcaaat
tgaaaaataccatatagtcatgaactttggaacattttcaagctttctca
tacctagaaaatatctgctgttggcgtatttgttacttaataacaaaaga
cgttctctttattcctgcccctagtttatcacatatcactctcttccttc
tacttttcttaatcacaatattatggtgaaagttattttgttagtgctgc
ccaccagcatcctcacatgcattgctaatgctatttagtctaaaaaagct
caggtcattccaagcaatgaaatctattcaaacagatgtgacattgatgt
atagagcagtcatttagcttacagattttgttttcactaacacaggattg
cagaaaaggtgggagaaaacataaaatttttagtctaacttgggaaagga
cagatatagttatatatggaaaataaggattagaataaacttgttgtttt
tcaatttcagtcagtaagaccagtaattaattgagacatttagagacaga
gagagaaagcatttcttggaaacaataattatgtaaaccataggaaacta
ggatgaaattgtttggaatagtttggggaaatcaaatactt
gaattccacataaaaccagagacactgaaacttatagaggagaaagtagg
gaaaagcctcgacgatatgggtacaggggaaaaattcctgaatagaacag
caatggcttgtgctgtaagatcaagaattgataaatgggacctcataaaa
ttgcaaagcttctgcaaagcaaaagacaccgtcaataagacaaaaaggcc
accaacagattgggaaagtatctttacctatcacaaatcagataggggac
taatatccaatatatataaagaactcaagaaggtggactccagaaaatca
aataaccccattaaaaaatggggctcagacctgaacaaagaattctcacc
tgagaaataccgaatggcagagaagcacctgaaaaaatgttcaacatcct
taatcatcagggaaatgcaaatcaaaacaacactgagattccacttcact
ccagtcagaatggctaagatcaaaaactcaggtgacagcagatgctggcg
aggatgtggagaaaggggaacactcctccattgttggtgggattgcaagc
ttgtacaaccactctggaaatcagtctggcggttcctcagaaaaattgga
catagtactaccgaaggatcccgcaatacctctcctgggcatatatccag
aagatgtcccaaccagtaagaagaacacatgctccactatgttcatagca
gccttgtttataatagccagaatctggaaagaacccagatgcccctcaac
agaggaatggatacagaaaatgtggtacatttacacaatggaatactact
caggtatttaaaaaatgaatttatgaaatttcttaggcaaatggatggat
ctggagggtatcatcctgagtgaagaaacccaatcacaaagggactcgca
catatgtactcattgatagtggattatagcccagaaacttggagattact
cttaaaactcttcttccttccttttttgaggctttaaaagaaagcttttg
gtttatgttttatatgtgcattacaagaaaacaaatccgaaaagcaagaa
ccaaggcacccggtcacattagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41679706_41680879
seq2: B6Ng01-062O24.b_47_1237 (reverse)

seq1  AAGTATTTTATTTCCCCAAACTA-TCCAAACAA-TTCTACCT-GTT--CC  45
      |||||||| |||||||||||||| ||||||||| |||  ||| |||  | 
seq2  AAGTATTTGATTTCCCCAAACTATTCCAAACAATTTCATCCTAGTTTCCT  50

seq1  ATAGTTTACATAATTAATGTTTTCAAGAATTGC-TTCTCTCT-TGT-TCT  92
      || ||||||||||||| ||||| |||||| ||| |||||||| ||| |||
seq2  ATGGTTTACATAATTATTGTTTCCAAGAAATGCTTTCTCTCTCTGTCTCT  100

seq1  TAATGTCTCAATTAATTACTGGTTCTTACTGACTG-AATTG-AAAACA--  138
       ||||||||||||||||||||| |||||||||||| ||||| ||||||  
seq2  AAATGTCTCAATTAATTACTGG-TCTTACTGACTGAAATTGAAAAACAAC  149

seq1  CAGGTTATTCTAATCCTATGTTTCCA-ATATAACTATATCTGT-CTTTCC  186
       || |||||||||||||   |||||| |||||||||||||||| ||||||
seq2  AAGTTTATTCTAATCCTTATTTTCCATATATAACTATATCTGTCCTTTCC  199

seq1  CAAGTTGGCTGAAAACTTTTATGTTTTCT-CCACCTTTTCTGCCATTCTT  235
      |||||| |   |||| ||||||||||||| |||||||||||| || || |
seq2  CAAGTTAGACTAAAAATTTTATGTTTTCTCCCACCTTTTCTG-CAATCCT  248

seq1  GTG-TAGTGAAAACAAAATCTGTAAAGCTAAATGACTGCTCTATACATCA  284
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTTAGTGAAAACAAAATCTGT-AAGCTAAATGACTGCTCTATACATCA  297

seq1  ATGTCACATCTGTTTGAATAGATTTCATTGCTTGG-ATGACCTGAGC-TT  332
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ATGTCACATCTGTTTGAATAGATTTCATTGCTTGGAATGACCTGAGCTTT  347

seq1  TTTAGACTAAATAGCATTAGCAATGCATGTGAGGATGCTGGTGGGCAGCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTAAATAGCATTAGCAATGCATGTGAGGATGCTGGTGGGCAGCA  397

seq1  CTAAC-AAATAACTTTCACCATAATATTGTGATTAAG-AAAGTAGAAGGA  430
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAACAAAATAACTTTCACCATAATATTGTGATTAAGAAAAGTAGAAGGA  447

seq1  AGAGAGTGATATGTGATAAACTAGGGGCAGGAATAAAGAGAACGTCTTTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGATATGTGATAAACTAGGGGCAGGAATAAAGAGAACGTCTTTT  497

seq1  GTTATTAAGTAACAAATACGCCAACAGCAGATATTTTCTAGGTATGAGAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAGTAACAAATACGCCAACAGCAGATATTTTCTAGGTATGAGAA  547

seq1  AGCTTGAAAATGTTCCAAAGTTCATGACTATATGGTATTTTTCAATTTGA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAAATGTTCCAAAGTTCATGACTATATGGTATTTTTCAATTTGA  597

seq1  CTGTAAATGTATGCATCCAAAACAGAGATGCACACTTTAAAATGTTATTT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGTATGCATCCAAAACAGAGATGCACACTTTAAAATGTTATTT  647

seq1  TATTTACCTTCTCTCTGAAATTTTCCTACATGAATGCATGCTAGGGATTT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCTTCTCTCTGAAATTTTCCTACATGAATGCATGCTAGGGATTT  697

seq1  TGAATATTTTTGGGCTGTTTGTCATTTGTGTTTCCTCTATGAGAGCTGTC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTTTGGGCTGTTTGTCATTTGTGTTTCCTCTATGAGAGCTGTC  747

seq1  TGTTCATCTATTTAGCTCATTTAGACATTGTAAGCTTTGTTTTCTCTGGC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTATTTAGCTCATTTAGACATTGTAAGCTTTGTTTTCTCTGGC  797

seq1  TTTCTTTCATATTTCTTTATGGAGTCTAGATATTAATACATTTGCATTTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCATATTTCTTTATGGAGTCTAGATATTAATACATTTGCATTTT  847

seq1  ATAATCTGTTGTCCGTTCTGCTGATCCCTTCCACGTAGTTCCATTTTTAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTTGTCCGTTCTGCTGATCCCTTCCACGTAGTTCCATTTTTAT  897

seq1  TAATAGCAATGTATTTTTTTAACATATAACAATCATTATTAAGAAAATCA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAATGTATTTTTTTAACATATAACAATCATTATTAAGAAAATCA  947

seq1  CAGATATCTTCTTCACTTTTGATCTCCTAAAATATTCAATGCCTATTGAT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCTTCTTCACTTTTGATCTCCTAAAATATTCAATGCCTATTGAT  997

seq1  GAAATCATATCTACTAACTTATTTTTTTTTTCAGTTTCAGTGAGAAATAT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATATCTACTAACTTATTTTTTTTTTCAGTTTCAGTGAGAAATAT  1047

seq1  ATAGGGAAGTCAAAGGAATTTAAACAACATAGTCAGATCATCTGGGATGG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGTCAAAGGAATTTAAACAACATAGTCAGATCATCTGGGATGG  1097

seq1  TTTATTCTCAATGTCACAGTATTTTACTGGGTTAGGAAATCATTAAATTA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCAATGTCACAGTATTTTACTGGGTTAGGAAATCATTAAATTA  1147

seq1  GGGCTTATACTAAATTAATCAAAAATGGAGTCAGTTTGGAATTC  1174
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATACTAAATTAATCAAAAATGGAGTCAGTTTGGAATTC  1191

seq1: chr2_41549881_41550509
seq2: B6Ng01-062O24.g_513_1140

seq1  CACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCT  50

seq1  GGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGC  100

seq1  AAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG-AAAAT  149
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAAT  150

seq1  TGGACATAGTACTACCGAAGGATCCCGCAATACCTCTCCTGGGCATATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAGTACTACCGAAGGATCCCGCAATACCTCTCCTGGGCATATAT  200

seq1  CCAGAAGATGTCCCAACCAGTAAGAAGAACACATGCTCCACTATGTTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGTCCCAACCAGTAAGAAGAACACATGCTCCACTATGTTCAT  250

seq1  AGCAGCCTTGTTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTGTTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCCCCT  300

seq1  CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATAC  350

seq1  TACTCAGGTATTTAAAAAATGAATTTATGAAA-TTCCTAGGCAAATGGAT  398
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TACTCAGGTATTTAAAAAATGAATTTATGAAATTTCTTAGGCAAATGGAT  400

seq1  GGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGGACT  448
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGATCTGGAGGGTATCATCCTGAGTGAAGAAACCCAATCACAAAGGGACT  450

seq1  CGCACAATATGTACTCACTGATAAGTGGATAATAGCCCAGAAACTT-GAG  497
      ||||| ||||||||||| |||| ||||||| ||||||||||||||| |||
seq2  CGCAC-ATATGTACTCATTGAT-AGTGGATTATAGCCCAGAAACTTGGAG  498

seq1  ATATACTCTTAAAACTC-TCTTCCCTCCTTTTTTGAAGCTTTTAAAAGAA  546
      || |||||||||||||| |||||| ||||||||||| ||||| |||  ||
seq2  AT-TACTCTTAAAACTCTTCTTCCTTCCTTTTTTGAGGCTTTAAAAGAAA  547

seq1  GCTTTT-GTTTATGTTTTAATATGTGCATTACAAGAAACAAAACACAAAA  595
      |||||| ||||||||||| ||||||||||||||||||| | ||  |  ||
seq2  GCTTTTGGTTTATGTTTT-ATATGTGCATTACAAGAAA-ACAAATCCGAA  595

seq1  AAGCAAGAACAAAGTCACCCAGTCACATTTAGCT  629
      |||||||||| ||| ||||| |||||| ||||||
seq2  AAGCAAGAACCAAGGCACCCGGTCACA-TTAGCT  628