BAC Information

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BAC

Clone NameB6Ng01-063C11
Chromosome2 (Build37)16 (Build37)
Map Location 142,776,691 - 142,777,69828,206,180 - 28,207,246
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063C11.bB6Ng01-063C11.g
ACCDH883335DH883336
length1,0351,054
definitionDH883335|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C11, 5' end.DH883336|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,698)(28,206,180 - 28,207,246)
sequence
tctttagaattcaatgcacgactcattatatggagaggacctcggaattg
tttgttcagttctgagccccattttttaatggggttatttgatattctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggt
cccatttgtcgattcttgatcttacagcacaagccattgctgttctgttc
aggaatttttcccctgtgcccatatcttcaaggcttttccccactttctc
ctctataagtttcagtgtctctggttttatgtgaagttccttgatccact
tagatttgaccttagtacaaggagataagtatggatcgattcgcattctt
ctacacgataacaaccagttgtgccagcaccaattgttgaaaaggctgtc
tttcttccactggatggttttagctcccttgtcgaagatcaagtgaccat
aggtgtgtgggttcatttctggatcttcaattctattccattggtctact
tgtctgtctctataccagtaccatgcagtttttatcacaattgctctgta
gtaaagctttaggtctggcatggtgattccgccagaagttcttttatcct
tgagaagactttttgctatcctaggttttttgttattccagacaaatttg
caaattgctccttccaattcgttgaagaattgagttggaattttgatggg
gattgcattgaatctgtagattgcttttggcaagatagccatttttacaa
tgttgatcctgccaatccatgagcatgggagatctttccatcttctgaga
tcttctttaatttctttcttcagagatttgaagttttatcatacagatct
ttcacttccttagttagagtcacgccaagatattttatattatttgtgac
tatgagaaggtgttgtttccctaatttctttctca
gaattctaaaacttaaagctgaaggaggaagatgctaagtctataggtgg
tggttctgatgttctgatgctctgatcaggaacctgcatgtgaacactga
aggttctgtcccacaaatgattcttgatcaatcaataaagatgctagcag
ccaatggctaggtggaagaggtgagacttccaggttttcgcaggcagatt
aagagacacagggagaagaaaaaggttcagcctgcttctgagggagaaag
agccaccagctatataagatctcgggtggagtggccattggcaactcagt
tgagggaaaatttagaggtgttgatctaggaacgaaaagaagggcatgaa
agcagtggaaggcttagaagtagccaaccattgagctaaaaacatattaa
aaataagctaacatgtttgtgtctttcttccatggaaggtcagggctgat
agtgtgatctgcccagagttctgcagggtagtagaaactacatgctacaa
gaatccatcaccatggggaagaattataacaccaagcaactcagttcttc
aaccacaaagacccccccccccccagagaaatatttctctcagcaaggag
ccattcctcctaaacctacccaaactgggccaacagctggggaccgagta
gtcctatgcctgagaacatggggccacatcattgagaccatcacaagtat
gtcctatcattgagaggacccagctctagcagttggcatgcttactcaat
aggtctaaacagtttcctccaagtatctgcaatgccaggtgagtgactgt
agtgaggaaaggattcaaggagttgctgctactgctgctgctgctgctga
cagccagagaaacatggttgggatgtgttggggcacagagcacttgaaga
tgttaggatggctaaaatgccgctatcaagtacgacagacatcacaattt
ctttttgtttgtttgttgtttgttgtgttgttgtgttgttggacattgaa
ggagatagattattaaaaataaagcaaaacaaaagaatctggaagtgcag
tact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-063C11.b_45_592 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCCT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCAAGAATCGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAATA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACA-------AAACCATCCAG  543
      |||||||||||||||||||||||||||||| |       |||| || |  
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAACAATTC--  548

seq1  TGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTT  593
                                                        
seq2  --------------------------------------------------  548

seq1  ATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGG  643
                                                        
seq2  --------------------------------------------------  548

seq1  TCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAA  693
                                                        
seq2  --------------------------------------------------  548

seq1  CTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGA  743
                                                        
seq2  --------------------------------------------------  548

seq1  AAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTG  793
                                                        
seq2  --------------------------------------------------  548

seq1  ACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACT  843
                                                        
seq2  --------------------------------------------------  548

seq1  GTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTA  893
                                                        
seq2  --------------------------------------------------  548

seq1  TCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGA  943
                                                        
seq2  --------------------------------------------------  548

seq1  AGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA  993
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAAAGAATTC  1008
                     
seq2  ---------------  548

seq1: chr16_28206180_28207246
seq2: B6Ng01-063C11.g_66_1119

seq1  GAATTCTAAAACTCAAAGCTGAAGGAGGAAGATGCTAAGTCTATAGGTGG  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAACTTAAAGCTGAAGGAGGAAGATGCTAAGTCTATAGGTGG  50

seq1  TGGTTCTGATGTTCTGATGCTCTGATCAGGAACCTGCATGTGAACACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGATGTTCTGATGCTCTGATCAGGAACCTGCATGTGAACACTGA  100

seq1  AGGTTCTGTCCCACAAATGATTCTTGATCAATCAATAAAGATGCTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGTCCCACAAATGATTCTTGATCAATCAATAAAGATGCTAGCAG  150

seq1  CCAATGGCTAGGTGGAAGAGGTGAGACTTCCAGGTTTTCGCAGGCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCTAGGTGGAAGAGGTGAGACTTCCAGGTTTTCGCAGGCAGATT  200

seq1  AAGAGACACAGGGAGAAGAAAAAGGTTCAGCCTGCTTCTGAGGGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACAGGGAGAAGAAAAAGGTTCAGCCTGCTTCTGAGGGAGAAAG  250

seq1  AGCCACCAGCTATATAAGATCTCGGGTGGAGTGGCCATTGGCAACTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAGCTATATAAGATCTCGGGTGGAGTGGCCATTGGCAACTCAGT  300

seq1  TGAGGGAAAATTTAGAGGTGTTGATCTAGGAACGAAAAGAAGGGCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAATTTAGAGGTGTTGATCTAGGAACGAAAAGAAGGGCATGAA  350

seq1  AGCAGTGGAAGGCTTAGAAGTAGCCAACCATTGAGCTAAAAACATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGAAGGCTTAGAAGTAGCCAACCATTGAGCTAAAAACATATTAA  400

seq1  AAATAAGCTAACATGTTTGTGTCTTTCTTCCATGGAAGGTCAGGGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTAACATGTTTGTGTCTTTCTTCCATGGAAGGTCAGGGCTGAT  450

seq1  AGTGTGATCTGCCCAGAGTTCTGCAGGGTAGTAGAAACTACATGCTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATCTGCCCAGAGTTCTGCAGGGTAGTAGAAACTACATGCTACAA  500

seq1  GAATCCATCACCATGGGGAAGAATTATAACACCAAGCAACTCAGTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCACCATGGGGAAGAATTATAACACCAAGCAACTCAGTTCTTC  550

seq1  AACCACAAAGACCCCCCCCCCCCCAGAGAAATATTTCTCTCAGCAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAGACCCCCCCCCCCCCAGAGAAATATTTCTCTCAGCAAGGAG  600

seq1  CCATTCCTCCTAAACCTACCCAAACTGGGCCAACAGCTGGGGACCGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTCCTAAACCTACCCAAACTGGGCCAACAGCTGGGGACCGAGTA  650

seq1  GTCCTATGCCTGAGAACATGGGGCCACATCATTGAGACCATCACAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGCCTGAGAACATGGGGCCACATCATTGAGACCATCACAAGTAT  700

seq1  GTCCTATCATTGAGAGGACCCAGCTCTAGCAGTTGGCATGCTTACTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATCATTGAGAGGACCCAGCTCTAGCAGTTGGCATGCTTACTCAAT  750

seq1  AGGTCTAAACAGTTTCCTCCAAGTATCTGCAATGCCAGGTGAGTGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAAACAGTTTCCTCCAAGTATCTGCAATGCCAGGTGAGTGACTGT  800

seq1  AGTGAGGAAAGGATTCAAGGAGTTGCTGCTACTGCTGCTGCTGCTGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAAAGGATTCAAGGAGTTGCTGCTACTGCTGCTGCTGCTGCTGA  850

seq1  CAGCCAGAGAAACATGGTTGGGATGTGTTGTGGCACAGAGCACTTG-AGA  899
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  CAGCCAGAGAAACATGGTTGGGATGTGTTGGGGCACAGAGCACTTGAAGA  900

seq1  TG-TAGGATGGCTAAAAATGCCGCTATCAAGTACGACAGACATCACAAAT  948
      || |||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TGTTAGGATGGCT-AAAATGCCGCTATCAAGTACGACAGACATCAC-AAT  948

seq1  TTCTTTTTTGTTTGTTTGTTTGTTTGTT-TGTTGTTGTTGTTGTTGTTTT  997
      ||| |||||||||||||| ||||||||| |||||||| ||||||||    
seq2  TTC-TTTTTGTTTGTTTG-TTGTTTGTTGTGTTGTTG-TGTTGTTG----  991

seq1  GATCATTTGAAGGAAGAGTAAGATTATTAAAAATAAAGCAAAACAAAGGA  1047
      || || ||||||   |||  ||||||||||||||||||||||||||| ||
seq2  GA-CA-TTGAAG---GAGATAGATTATTAAAAATAAAGCAAAACAAAAGA  1036

seq1  ATCCTGGAAAGTGCAGTACT  1067
      || |||| ||||||||||||
seq2  AT-CTGG-AAGTGCAGTACT  1054