BAC Information

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BAC

Clone NameB6Ng01-063N08
Chromosome2 (Build37)
Map Location 123,451,122 - 123,597,026
singlet/doubletdoublet
Overlap genenone
Upstream geneSpata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N08.bB6Ng01-063N08.g
ACCDH883806DH883807
length1,152165
definitionDH883806|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N08, 5' end.DH883807|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,595,893 - 123,597,026)(123,451,122 - 123,451,279)
sequence
gaattcaggggacccaatgggtggtgatttccacctacatgggaccgaaa
gtgtttgatcatgtctcctgggcccctggctcctgttgaagttaccaccc
ccacccccactcacacacacaggagaggtgtatggctatcagcctttcca
catacaaataaggtttcctccaagctcagtccaagccaatgagaggtacc
tactgaagaaccctgaatctccccccaaaactgtatataaatcctatcca
gggaactaaaggtatgtgagaactactccatcttctgagccttttgttct
aagagctgtaacactggggaagagatctgctctcctgaagcctgaggctt
cgcctggatagtaggcctctagatggcccagcccaatgactcgatgcaga
gtggctcagagttacctagtgacctggaaagcaaggcagagactttgcct
ccctgctcacactttcttcccttctcaggaaccctaacaccaggcctggc
cagagatctctatcgaaagcctctggtactcaggcccacatctatgtcaa
actacccgccaccctgcagttacaggtccatctctgcatcaggtttccaa
gtcacacacagcggcaaactcttcaaaaagtaaaaaaggaatcaatttga
aaatatggaaaaacagtgaataataacacctgatcacgaagtatgcatga
agaaagttctaaccaataacttcaactctgaattaaatataatgcagaaa
gttttaaaaaaatgactctgtaaaacaaatgtccaatccaaagttttttt
aaaaaaatatttaatatatgaaactaaagaagaaattatcatgatgatca
agtccaaaaattacaattctgaaatagttgagttaaagtgcagattatcg
gaagaatacaaaaatgaaaggcaaacagacaaacagacatggcagtggaa
gaaattttatactttaaatttcagaaatatgcctgtaatatgctatattg
cagatgaagaaaagaacactgatgggagagagtcatctgatgaggatttt
ttttctgctgagtccccctcataaacaaccctagctttgtcactgatgaa
atataacagaaattgggctgagccgacagctcattggagaaatttgttgg
gg
ttgggttttattataatctagaagagcattgtcagcttctgagcacatat
aaatccacgtcatcattagtcctatagcctttctttttggtttttaagat
agttaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccccca
ttgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123595893_123597026
seq2: B6Ng01-063N08.b_89_1196 (reverse)

seq1  CCCCAACAAATCTCCTCCCAATGAGCCTGTCGTGCTTCAGCCCACTTTTC  50
      ||||||||||| ||   |||||||| |||||| || ||||||||  ||||
seq2  CCCCAACAAATTTC--TCCAATGAG-CTGTCG-GC-TCAGCCCA-ATTTC  44

seq1  TGGTTATTATTTCATCAGTTGACAAAAGCTAGTGTTGTTTATGAAGAGGG  100
      | |||| ||||||||||| |||| |||||||| |||||||||| || |||
seq2  T-GTTA-TATTTCATCAG-TGAC-AAAGCTAGGGTTGTTTATG-AGGGGG  89

seq1  AACTTCAGCAGAAAAAAAATTCCTTCATCAGATTGACTCTCTCCCATCAG  150
      |   ||||||||||||||||  | |||||||| |||||||||||||||||
seq2  A--CTCAGCAGAAAAAAAAT--CCTCATCAGA-TGACTCTCTCCCATCAG  134

seq1  TGTTTCTTTTCTTCATCTGCAATATAGCATATTTACAGGCATATTTTCTG  200
      || |||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TG-TTCTTTTCTTCATCTGCAATATAGCATA-TTACAGGCATA-TTTCTG  181

seq1  AAATTTTAAAAGTATAAAAATTTCTTCCACCTGCCATGTCTGTTTTGTCT  250
      ||||||  ||||||| ||||||||||||| |||||||||||| |||||||
seq2  AAATTT--AAAGTAT-AAAATTTCTTCCA-CTGCCATGTCTG-TTTGTCT  226

seq1  GTTTGCCTTTCATTTTTGTATTCTTCCGATAATCCTGCACTTTAACTCAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTGCCTTTCATTTTTGTATTCTTCCGATAAT-CTGCACTTTAACTCAA  275

seq1  CTATTTCAGAATTGTAATTTTTGGACTTGATCATCATGATAATTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGAATTGTAATTTTTGGACTTGATCATCATGATAATTTCTTCT  325

seq1  TTAGTTTCATATATTAAATATTTTTTTTAAAAAAACTTTGGATTGGACAT  400
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAGTTTCATATATTAAATA-TTTTTTTAAAAAAACTTTGGATTGGACAT  374

seq1  TTGTTTTACAGAGTCATTTTTTTAAAACTTTCTGCATTATATTTAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACAGAGTCATTTTTTTAAAACTTTCTGCATTATATTTAATTCA  424

seq1  GAGTTGAAGTTATTGGTTAGAACTTTCTTCATGCATACTTCGTGATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAGTTATTGGTTAGAACTTTCTTCATGCATACTTCGTGATCAGG  474

seq1  TGTTATTATTCACTGTTTTTCCATATTTTCAAATTGATTCCTTTTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATTCACTGTTTTTCCATATTTTCAAATTGATTCCTTTTTTACT  524

seq1  TTTTGAAGAGTTTGCCGCTGTGTGTGACTTGGAAACCTGATGCAGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAGTTTGCCGCTGTGTGTGACTTGGAAACCTGATGCAGAGATG  574

seq1  GACCTGTAACTGCAGGGTGGCGGGTAGTTTGACATAGATGTGGGCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAACTGCAGGGTGGCGGGTAGTTTGACATAGATGTGGGCCTGAG  624

seq1  TACCAGAGGCTTTCGATAGAGATCTCTGGCCAGGCCTGGTGTTAGGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGGCTTTCGATAGAGATCTCTGGCCAGGCCTGGTGTTAGGGTTC  674

seq1  CTGAGAAGGGAAGAAAGTGCGAGCAGGGAGGCAAAGTCTCTGCCTTGCTT  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAGAAGGGAAGAAAGTGTGAGCAGGGAGGCAAAGTCTCTGCCTTGCTT  724

seq1  TCCAGGTCACTAGGTAACTCTGAGCCACTCTGCATCGAGTCATTGGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCACTAGGTAACTCTGAGCCACTCTGCATCGAGTCATTGGGCTG  774

seq1  GGCCATCTAGAGGCCTACTATCCAGGCGAAGCCTCAGGCTTCAGGAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTAGAGGCCTACTATCCAGGCGAAGCCTCAGGCTTCAGGAGAGC  824

seq1  AGATCTCTTCCCCAGTGTTACAGCTCTTAGAACAAAAGGCTCAGAAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTTCCCCAGTGTTACAGCTCTTAGAACAAAAGGCTCAGAAGATG  874

seq1  GAGTAGTTCTCACATACCTTTAGTTCCCTGGATAGGATTTATATACAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCTCACATACCTTTAGTTCCCTGGATAGGATTTATATACAGTT  924

seq1  TTGGGGGGAGATTCAGGGTTCTTCAGTAGGTACCTCTCATTGGCTTGGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGAGATTCAGGGTTCTTCAGTAGGTACCTCTCATTGGCTTGGAC  974

seq1  TGAGCTTGGAGGAAACCTTATTTGTATGTGGAAAGGCTGATAGCCATACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGGAGGAAACCTTATTTGTATGTGGAAAGGCTGATAGCCATACA  1024

seq1  CCTCTCCTGTGTGTGTGAGTGGGGGTGGGGGTGGTAACTTCAACAGGAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGTGTGTGTGAGTGGGGGTGGGGGTGGTAACTTCAACAGGAGC  1074

seq1  CAGGGGCCCAGGAGACATGATCAAACACTTTCGG  1134
      ||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCCAGGAGACATGATCAAACACTTTCGG  1108

seq1: chr2_123451122_123451279
seq2: B6Ng01-063N08.g_73_237

seq1  TTGGGTTTTATTATAATCTAGAAGAGCATTGTCAGCTTCTGAGCACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTATTATAATCTAGAAGAGCATTGTCAGCTTCTGAGCACATAT  50

seq1  AAATCCACGTCATCATTAGTCCTATAGCCTTTCTTTTTGGTTTTTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACGTCATCATTAGTCCTATAGCCTTTCTTTTTGGTTTTTAAGAT  100

seq1  AGTTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------  143
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  AGTTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCCCCA  150

seq1  GTGTGTGTGTGTGTG  158
       ||||||||||||||
seq2  TTGTGTGTGTGTGTG  165