BAC Information

Click to search

BAC

Clone NameB6Ng01-064D10
Chromosome2 (Build37)14 (Build37)
Map Location 80,331,836 - 80,332,22631,382,247 - 31,383,307
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064D10.bB6Ng01-064D10.g
ACCDH884067DH884068
length8731,064
definitionDH884067|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D10, 5' end.DH884068|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,836 - 80,332,226)(31,382,247 - 31,383,307)
sequence
gaattctctggtggaatttttggggtcacttatgtatactatcatatcat
ctgcaaagagtgatatgttaacttcttcctttccaatttgtatccctctg
acctccttttgttgtctaattgctctggccagaacttcaagtactatatt
gaatagatagggagaaaatgggcagccttgtcttgtccctgattttaggg
aatgctctatttaatttgatgttggttactggtttgctgtagattgcttt
tactatgtttaggtatgggccttgaattcctgatcttttcaagactttta
ccatgaaggggtgttaaattttgtcaaattctttctcagcatttaatgag
atgatcatgtggttttttttctttgagtttgtgtatgtagtagattacac
tgatagattttcatatattgaaccaaaatatacacataaatgataaaatg
tttaatgtacctcaattatttttatgctctaggcagggatatgttatgtg
tagctctaaggttattttacaaagacaaaagtaaaaacaaaccaaaatag
tatcttgaaattattgctacaatctgttacacattatttttatcaagaga
aatttgtgtatgtgtttcaaaaacttatacacaatgggtggggtggctag
agcaatggctcatcagttaagagcccttgctactcttacagaacagggct
ctcttttcgtaggacccacatggtggcttacaaccatccctaattccagt
tccaggagttctgaaattcttttctgactttctccaacaccaggcaggca
tgtggtgcatagacattcatgcaggcaaaacactcatgcacataaaataa
ataaatcttttttttttttttgg
gaattccaccttctcggagctcttcaaaaaggagcacccagaccggttca
ttgagtgctacattgccgagcaaaacatggtgggtgcctgggtagggtga
aggacacacagccacagctgcagggctatcctgacaggtagcagcaggcg
gaagccctctttctccctcgggcagccgtattgacagtgctgagtgacag
ccgtgggtcagctgaaagaaaaccacagagtaactagaacccacattgac
ctttgaccttgggtagccaattttggggatgattattcccaagggaggag
cttgtatataggacagataatggaggtaaaggggacctgctggtctatag
agcctttaaaaaaagggaggaggaggctcctatgtagcccaggacaccct
agatttcagtatgtagctaaggctagtttgaattcccgatcctcctatgc
cccaagttgctgggattatagattgcaaccatcctggtgtcaaaggaaac
ttgttgatttttggtctttttttttttttttttttttttttttgtttggg
ttttccgagacagggtttctctgtatagccctggctgtcctggaactcac
tttgtagaccaggctggcctcgaactcagaaatccgcgcctgcctctgcc
tccagagtgctgggattaaaggcgtgcgccaccatgcccaggaaactgag
tttaagaattttgaaataatcatttcaagtcaaaggagtttggggctggg
aaacagatgacagagccacgggtacccaaggcaactctcgaggggtagct
tactaggatcgcagcctccttctgcctcccccatgtggcctcagggagag
gtctggggcttccctggtcttcagggctaatctgggccctcctgccctca
ggtgagcattgccgtggggctgtgcacaactgtgaccggacaagtgccct
tcttgagtacttcgcggcctacttcacccgggctttcaacagattccgca
tgggcgccatctcttgaagcacatcacctcttgtgctcccactgtggtgg
tccttggtggttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331836_80332226
seq2: B6Ng01-064D10.b_47_425 (reverse)

seq1  ACAAACTCAAAG-ACAAAAACCACATGATCATCTCGTTAGATGCGGAGAA  49
      |||||||||||| | |||||||||||||||||||| ||| |||| |||||
seq2  ACAAACTCAAAGAAAAAAAACCACATGATCATCTCATTAAATGCTGAGAA  50

seq1  AGCATTTGACAAAATCTAACACCCATTCATGATAAAAGCCTTGGAAAGAT  99
      || |||||||||||| |||||||| |||||| |||||| |||| ||||||
seq2  AGAATTTGACAAAATTTAACACCCCTTCATGGTAAAAGTCTTGAAAAGAT  100

seq1  CAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA  149
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CAGGAATTCAAGGCCCATACCTAAACATAGTAAAAGCAATCTACAGCAAA  150

seq1  CCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCATTCCCACT  199
      |||||| ||||||||||| ||||| |            ||||||||  ||
seq2  CCAGTAACCAACATCAAATTAAATAG------------AGCATTCC--CT  186

seq1  AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCATATCTATTCAACA  249
      |||||||||||| ||||||||||||||| ||||||| ||||||||||| |
seq2  AAAATCAGGGACAAGACAAGGCTGCCCATTTTCTCCCTATCTATTCAATA  236

seq1  TAGTATTTGAAGTTCTAGCCAGAGCAATTCGACAAC-AAAGGAGATCAAA  298
      ||||| |||||||||| |||||||||||| |||||| ||||||| ||| |
seq2  TAGTACTTGAAGTTCTGGCCAGAGCAATTAGACAACAAAAGGAGGTCAGA  286

seq1  GGGATACAAATTGGAAAGGAAGAAGTTAAAATATCACTTTTTGCAGATGA  348
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GGGATACAAATTGGAAAGGAAGAAGTTAACATATCACTCTTTGCAGATGA  336

seq1  TATAATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAA  391
      ||| |||||||| ||||||||||| ||||||||||||||||||
seq2  TATGATAGTATACATAAGTGACCCCAAAAATTCCACCAGAGAA  379

seq1: chr14_31382247_31383307
seq2: B6Ng01-064D10.g_68_1131

seq1  GAATTCCACCTTCTCGGAGCTCTTCAAAAAGGAGCACCCAGACCGGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTTCTCGGAGCTCTTCAAAAAGGAGCACCCAGACCGGTTCA  50

seq1  TTGAGTGCTACATTGCCGAGCAAAACATGGTGGGTGCCTGGGTAGGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCTACATTGCCGAGCAAAACATGGTGGGTGCCTGGGTAGGGTGA  100

seq1  AGGACACACAGCCACAGCTGCAGGGCTATCCTGACAGGTAGCAGCAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACAGCCACAGCTGCAGGGCTATCCTGACAGGTAGCAGCAGGCG  150

seq1  GAAGCCCTCTTTCTCCCTCGGGCAGCCGTATTGACAGTGCTGAGTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCTTTCTCCCTCGGGCAGCCGTATTGACAGTGCTGAGTGACAG  200

seq1  CCGTGGGTCAGCTGAAAGAAAACCACAGAGTAACTAGAACCCACATTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGTCAGCTGAAAGAAAACCACAGAGTAACTAGAACCCACATTGAC  250

seq1  CTTTGACCTTGGGTAGCCAATTTTGGGGATGATTATTCCCAAGGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCTTGGGTAGCCAATTTTGGGGATGATTATTCCCAAGGGAGGAG  300

seq1  CTTGTATATAGGACAGATAATGGAGGTAAAGGGGACCTGCTGGTCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATATAGGACAGATAATGGAGGTAAAGGGGACCTGCTGGTCTATAG  350

seq1  AGCCTTTAAAAAAAGGGAGGAGGAGGCTCCTATGTAGCCCAGGACACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAAAAAAAGGGAGGAGGAGGCTCCTATGTAGCCCAGGACACCCT  400

seq1  AGATTTCAGTATGTAGCTAAGGCTAGTTTGAATTCCCGATCCTCCTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAGTATGTAGCTAAGGCTAGTTTGAATTCCCGATCCTCCTATGC  450

seq1  CCCAAGTTGCTGGGATTATAGATTGCAACCATCCTGGTGTCAAAGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTGCTGGGATTATAGATTGCAACCATCCTGGTGTCAAAGGAAAC  500

seq1  TTGTTGATTTTTGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTTGATTTTTGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGGG  550

seq1  TTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  600

seq1  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCGCCTGCCTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCGCCTGCCTCTGCC  650

seq1  TCCAGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCAGGAAACTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCAGGAAACTGAG  700

seq1  TTTAAGAGTTTTGAAATAATCATTTCAAGTCAAAGGAGTTTGGGGCTGGG  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAATTTTGAAATAATCATTTCAAGTCAAAGGAGTTTGGGGCTGGG  750

seq1  AAACAGATGACAGAGCCACGGGTACCC-AGGCAACTCTCGAGGGTTAGCA  799
      ||||||||||||||||||||||||||| |||||||||||||||| |||| 
seq2  AAACAGATGACAGAGCCACGGGTACCCAAGGCAACTCTCGAGGGGTAGCT  800

seq1  TACTAGGATCGCAGCCT-CTTCTGCCTCCCACATGTGGCCTC-GGGAGGG  847
      ||||||||||||||||| |||||||||||| ||||||||||| ||||| |
seq2  TACTAGGATCGCAGCCTCCTTCTGCCTCCCCCATGTGGCCTCAGGGAGAG  850

seq1  TTCTGGG--CTCCCTGTTCTTCAGGGCTAATCT-GGCCCTCCTGCCCTCA  894
       ||||||   |||||| |||||||||||||||| ||||||||||||||||
seq2  GTCTGGGGCTTCCCTGGTCTTCAGGGCTAATCTGGGCCCTCCTGCCCTCA  900

seq1  GGTGAGCATTGCCGT-GGGCTGTGC-CACACGTGACCGGAC-AGTGCCCT  941
      ||||||||||||||| ||||||||| ||   |||||||||| ||||||||
seq2  GGTGAGCATTGCCGTGGGGCTGTGCACAACTGTGACCGGACAAGTGCCCT  950

seq1  TCTGCAGTACTTTCGCGGCCTTCTTCACACGGGCCTTCGACCAGATT-CG  990
      |||  ||||| |||||||||| |||||| ||||| ||| | |||||| ||
seq2  TCTTGAGTAC-TTCGCGGCCTACTTCACCCGGGCTTTC-AACAGATTCCG  998

seq1  CATGGCCGCCATCTCTGAGAGCAACATCAACCTCTGTGGCTCCCACTGTG  1040
      ||||| ||||||||||   ||| ||||| ||||||   ||||||||||||
seq2  CATGGGCGCCATCTCTTGAAGC-ACATC-ACCTCTTGTGCTCCCACTGTG  1046

seq1  GTGTGTCCATTGGTGAGTTCA  1061
      ||| |||| |||||| |||||
seq2  GTG-GTCC-TTGGTG-GTTCA  1064