BAC Information

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BAC

Clone NameB6Ng01-064I21
Chromosome2 (Build37)10 (Build37)
Map Location 121,325,669 - 121,326,80368,875,127 - 68,875,343
singlet/doubletsingletsinglet
Overlap geneMfap1a
Upstream geneCapn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p
Downstream geneWdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064I21.bB6Ng01-064I21.g
ACCDH884307DH884308
length1,110459
definitionDH884307|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I21, 5' end.DH884308|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,325,669 - 121,326,803)(68,875,127 - 68,875,343)
sequence
gaattcaatttaaggctaggttggacaatacagtgtcacctcccttcaaa
agtaaaaatagaaggagcagcaagatgtatagtgagtttggagaagtggt
gtccggtctgaaggctgactttgatctcctgcactgtcgagggaaaggag
aaaaccattctaaagttgtcctcaggttctcaccacatacgcatgccatt
cattcatgtccataataattaatttggaaagatagcccagagtgccagct
ctggttgctcttctaggagacctgggtttagtacccaagatccctacaat
ggctcataactgtgtatgactctagctccaggggatttgatgccctccct
cttctggtctgtatggataccaggcatgcactcagtagacagacagatat
aatagtcaagacagcaaaacacatgaaaattttaaagatttattgtttta
aataatgatagtagccagacgtggtggcgcaagcctttaatcccagcact
ttccaggcagatttctgagttcaaggccagcctagtacaaagtgagctcg
aggacaggcagggctacacagagaaaccctgtcttgaaaaaaccaaaaaa
aaaaaaaaaagatagtaatgaataaaagtgcagagaatatgggtaagtag
tacagaacttgtctcatgtgtaccaaatccagggttcaaatcccattagc
aggaggtggggaagaagtcaagctctatttagggacagcagtaacagctc
agttggtaaactacttgtttagcttggcactgtgtttgtgtaatcctaac
attttcagattttgaggcaggagaattgccatgaggttgagattaccctg
aactatataaaagttttgtcaaacaaacaagcaagcaaacacgtggctag
aaagattgggcagtgtttaaagcactagtgtctcagatcattcccaactc
ccacatggttattaacagtgttgtctcaagattcaatgcaaataatagcc
atttgtactcagtcggcatcagtgccttctcctgccatggtgtgccgcta
atgctatatctcaggaggccaagcaggtggctttccatggtctcagtcct
ccctgatcca
cagtacagccagggctacacagagaaaccctgtcttgaaaaaaaaacaaa
aaaatctggccatggtggccctgcttataatccttgcacttgggaggtgg
aggtatcagaatttaacatcattctcacacataatgagtttgacgtctcc
ttgagcacctgttttgttgggttttacattttttaaattatgtgtatgtg
ggtatgtgcacatgagttcaagtgcttacataagccagaagaaggtgttg
gaccccctgaagatggaattacatgtggctgtgagctacctgggatgggt
actagaacctaacttgagttctgggcaagaaccaagtagatatgcttaag
cactaagctatctctcactaggcccctggttttgtttgtttaaaagagag
aggagagagagagaagagagagagaagagaaagaggagagagagagagag
agagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121325669_121326803
seq2: B6Ng01-064I21.b_50_1159 (reverse)

seq1  TGGATCAGGGAGGACTGGAGCACATGGAGAGCCACCTGCCTGTGCCTCCT  50
      |||||||||||||||| |||  |||||| |||||||||| || |||||||
seq2  TGGATCAGGGAGGACT-GAGACCATGGAAAGCCACCTGCTTG-GCCTCCT  48

seq1  GAG-TATAGGCATTAAGGCCGGGGCACCACCATGGCCAGGAGAGGGCACT  99
      ||| |||| ||||||     | |||| |||||||| ||||||| ||||||
seq2  GAGATATA-GCATTA-----GCGGCA-CACCATGG-CAGGAGAAGGCACT  90

seq1  GGATGCCCCGGAACTGAGTTACAAATGGCTATTATTTGCAATTGAATCTG  149
       ||||||     |||||| |||||||||||||||||||| ||||||||| 
seq2  -GATGCC----GACTGAG-TACAAATGGCTATTATTTGC-ATTGAATCTT  133

seq1  GAGACAAACACTGTTAATAACCATGTGGGAGTTGGGAATTGAATCTGGAG  199
      ||||| |||||||||||||||||||||||||||||||||   |||| |||
seq2  GAGAC-AACACTGTTAATAACCATGTGGGAGTTGGGAAT--GATCT-GAG  179

seq1  ACAACTAGTGCTTTTAAACACTGCCCAATCTTTCTAGCCACCTTGTTTGC  249
      || |||||||| |||||||||||||||||||||||||||| | |||||||
seq2  AC-ACTAGTGC-TTTAAACACTGCCCAATCTTTCTAGCCA-CGTGTTTGC  226

seq1  TTGCTTGTTTGTTTTTGACAAAACTTTTATATAGTTCAGGGTAATCTCAA  299
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTG--TTTGACAAAACTTTTATATAGTTCAGGGTAATCTCAA  274

seq1  CCTCATGGCAATTCTCCTGCCTCAAAATCTGAAAATGTTAGGATTACACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGCAATTCTCCTGCCTCAAAATCTGAAAATGTTAGGATTACACA  324

seq1  AACACAGTGCCAAGCTAAACAAGTAGTTTACCAACTGAGCTGTTACTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGCCAAGCTAAACAAGTAGTTTACCAACTGAGCTGTTACTGCT  374

seq1  GTCCCTAAATAGAGCTTGACTTCTTCCCCACCTCCTGCTAATGGGATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAAATAGAGCTTGACTTCTTCCCCACCTCCTGCTAATGGGATTTG  424

seq1  AACCCTGGATTTGGTACACATGAGACAAGTTCTGTACTACTTACCCATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGATTTGGTACACATGAGACAAGTTCTGTACTACTTACCCATAT  474

seq1  TCTCTGCACTTTTATTCATTACTATCTTTTTTTTTTTTTTTTGGTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCACTTTTATTCATTACTATCTTTTTTTTTTTTTTTTGGTTTTTT  524

seq1  CAAGACAGGGTTTCTCTGTGTAGCCCTGCCTGTCCTCGAGCTCACTTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGGGTTTCTCTGTGTAGCCCTGCCTGTCCTCGAGCTCACTTTGT  574

seq1  ACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGGAAAGTGCTGGGATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGGAAAGTGCTGGGATTAA  624

seq1  AGGCTTGCGCCACCACGTCTGGCTACTATCATTATTTAAAACAATAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCGCCACCACGTCTGGCTACTATCATTATTTAAAACAATAAATC  674

seq1  TTTAAAATTTTCATGTGTTTTGCTGTCTTGACTATTATATCTGTCTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTTCATGTGTTTTGCTGTCTTGACTATTATATCTGTCTGTCT  724

seq1  ACTGAGTGCATGCCTGGTATCCATACAGACCAGAAGAGGGAGGGCATCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGCATGCCTGGTATCCATACAGACCAGAAGAGGGAGGGCATCAA  774

seq1  ATCCCCTGGAGCTAGAGTCATACACAGTTATGAGCCATTGTAGGGATCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGGAGCTAGAGTCATACACAGTTATGAGCCATTGTAGGGATCTT  824

seq1  GGGTACTAAACCCAGGTCTCCTAGAAGAGCAACCAGAGCTGGCACTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTAAACCCAGGTCTCCTAGAAGAGCAACCAGAGCTGGCACTCTGG  874

seq1  GCTATCTTTCCAAATTAATTATTATGGACATGAATGAATGGCATGCGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTTCCAAATTAATTATTATGGACATGAATGAATGGCATGCGTAT  924

seq1  GTGGTGAGAACCTGAGGACAACTTTAGAATGGTTTTCTCCTTTCCCTCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGAACCTGAGGACAACTTTAGAATGGTTTTCTCCTTTCCCTCGA  974

seq1  CAGTGCAGGAGATCAAAGTCAGCCTTCAGACCGGACACCACTTCTCCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGAGATCAAAGTCAGCCTTCAGACCGGACACCACTTCTCCAAA  1024

seq1  CTCACTATACATCTTGCTGCTCCTTCTATTTTTACTTTTGAAGGGAGGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATACATCTTGCTGCTCCTTCTATTTTTACTTTTGAAGGGAGGTG  1074

seq1  ACACTGTATTGTCCAACCTAGCCTTAAATTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATTGTCCAACCTAGCCTTAAATTGAATTC  1110

seq1: chr10_68875127_68875343
seq2: B6Ng01-064I21.g_72_536 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTC--TTTTCTTTTCTTTCTTTCTCTCTC  48
      ||||||||||||||||||||||||   ||||| |||| ||| ||| ||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCTCTTTCTCTTCTCTCTCTCT-TCTC  49

seq1  TCTCTCTCTCTCTCTCTCT---------------------CT--------  69
      |||||||| |||||||| |                     ||        
seq2  TCTCTCTC-CTCTCTCTTTTAAACAAACAAAACCAGGGGCCTAGTGAGAG  98

seq1  ----CT-----CT-----CTCTCT-CT---CTCT---------CTC----  88
          ||     ||      | ||| ||    |||         |||    
seq2  ATAGCTTAGTGCTTAAGCATATCTACTTGGTTCTTGCCCAGAACTCAAGT  148

seq1  -----TCT-----CCCTCCC---TCCCTCCCTCCC---------TCCCTC  116
           |||     || ||||   |  ||| |  ||         ||| ||
seq2  TAGGTTCTAGTACCCATCCCAGGTAGCTCACAGCCACATGTAATTCCATC  198

seq1  -------CCTCCCTCCCTTCCTTC---------------CTT--------  136
               |||  | | | ||||               |||        
seq2  TTCAGGGGGTCCAACACCTTCTTCTGGCTTATGTAAGCACTTGAACTCAT  248

seq1  -----CCTTCCTTCCT----------------------------------  147
           | | ||  | |                                  
seq2  GTGCACATACCCACATACACATAATTTAAAAAATGTAAAACCCAACAAAA  298

seq1  ----TCCT----------------TCCTT---------------------  156
          | ||                || ||                     
seq2  CAGGTGCTCAAGGAGACGTCAAACTCATTATGTGTGAGAATGATGTTAAA  348

seq1  --------CCTCC-CCTCCC------------------------------  167
              ||||| ||||||                              
seq2  TTCTGATACCTCCACCTCCCAAGTGCAAGGATTATAAGCAGGGCCACCAT  398

seq1  --CC---------------CTCTTTAAGACAGGGTTTCTCTGTGTAGCCC  200
        ||                | || |||||||||||||||||||||||||
seq2  GGCCAGATTTTTTTGTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCC  448

seq1  TGGCTGTCCTGGAATTC  217
      ||||||| |||||||||
seq2  TGGCTGTACTGGAATTC  465