BAC Information

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BAC

Clone NameB6Ng01-064L20
Chromosome2 (Build37)
Map Location 79,540,645 - 79,633,175
singlet/doubletdoublet
Overlap genePpp1r1c
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064L20.bB6Ng01-064L20.g
ACCDH884435DH884436
length1,048831
definitionDH884435|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L20, 5' end.DH884436|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,632,104 - 79,633,175)(79,540,645 - 79,541,476)
sequence
gaattccactctcttgaattatttctcccccaagattattactcaattgc
aaatgttccttattctgagtttttccccctagacaatatggtcaccaagg
atcatgggaagacaaagtacacatgtttatgaactgactatgaaaatcaa
acttttctcctacaaagttattttggggaagttagtgtaatcactgttac
ttttagatctttatttttaagtgaatactttcaatgcttataacaatgtc
ccaatgtcgtgtgtcttgacaaaacatcttgtaccttttcattacccatc
acacattactggaagaagccacatctatcatatttgaaaaactccaaagg
tgatgagaatctctgcttcctgtttccattctttggtaaactctaagaag
tagctgtgtcgtccccccccccccaatatccgtgatgtatggaaatcgat
ttgcctgtccactaatgtagataatacaatataggggttgtttcaatgtc
attaactacaatgcaaagcttacataaaaaaaaaaaaagacccacggctg
ctattatatttttctcaaggagcccgtcattttgatcatttgcataatga
agctctggggactctccagcaactgggatctggtattaggagaaaaatac
tagaatactctgtatggtaacactacattaatcaatattatgcctgttaa
gaaacgcatgcttttcccaagaggagggaagggacggagtgagcagacac
agaacaatgtcttagaggaggaaagaggaaggaagcttattattcggtca
ctgggacacaagtgaccttgaaatggaagatgtctcagggctttaagaat
ttgctcaaggagcatgtaataccaaatctcaatttgtatatgacttgtcg
gtaaattctgcattgctctctgcactagtgcagaaatcagccaaaatatg
agagaaaaaggagaaagaaacataagctgagctgtggtggtgatttggaa
agcacagcgccctcaacacatggatcaagatagtgaacacagatcatt
gaattctcctttattagtgttgctatcttacggctcactgtcctgaagtc
attactgatgtatgatgttattgtcacggtatcttctgagtagagtggaa
gttgcttaaggataactgcatcttctaactactttgattcccttgtcttt
gattctgttttaattttgtaaattatatagttgcatacataacaaaagta
gaaaccatgtgttgaacttcctatcagatcttagaaaagtacccaagcac
taaatgaattttaaaaatggctatttagaaggaaaccacaagcttgctgg
tctgctctgactgaatgcatgggcagtctgtaacatgcacccagtgcatg
agcctctctgttaggccttccttgctgtgatagattgaaccctgaaaacc
atgagctaaatatagatttttttctcttttaagttatttctatttggtat
catggtcatagcaatacaaaaggaactgatgtaaaatactagtgccatag
atgtggaggacactgctctgatcacacctagcaatgtaactctttcttgt
ggaagaaatctaagaaagcttgggtttgcctgctagagaaatctgagaag
gctgtgaacagggttgaatgcctgattccgacgcatctcaagagaaaaca
atgcttacagaaatggaagcaattaaagacagactaatgatctttcttat
ggaggaactctctcttggagtagatcttaaatgctcatgccagacattgt
caaattatttgtttatgcactgtgcatatcctaaaattgtgactgaacca
taaaaacaaaggaatggattgataatttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79632104_79633175
seq2: B6Ng01-064L20.b_42_1090 (reverse)

seq1  AATGATCTGTTGGTTCTACATTCCTGGATCCCAATGTGTTGAAGGGGCGC  50
      ||||||||||  ||||   ||  || |||||  |||||||||  ||||||
seq2  AATGATCTGT--GTTCACTAT--CTTGATCC--ATGTGTTGA--GGGCGC  42

seq1  TGTGGCTTTCCCCAAAATCACCACCACAAGCTCAGCTTATGTTTCTTTCT  100
      ||| |||||||   ||||||||||||| ||||||||||||||||||||||
seq2  TGT-GCTTTCC---AAATCACCACCAC-AGCTCAGCTTATGTTTCTTTCT  87

seq1  CCTTTTTTCTCTTCATATTTTGGGCTGAATTTCTGGCACTAGTGCAGAGG  150
      || |||||||| ||||||||| ||||| |||||| ||||||||||||| |
seq2  CC-TTTTTCTC-TCATATTTT-GGCTG-ATTTCT-GCACTAGTGCAGA-G  131

seq1  AGCAATGCAGAATTTACCGACAAGGTCATATTACAAATTGAGATTTGGTA  200
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AGCAATGCAGAATTTACCGACAA-GTCATA-TACAAATTGAGATTTGGTA  179

seq1  TTACATGCTCC-TGAGCAAATTCTTAAAGCCCCTGAGACATCTTCCATTT  249
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTACATGCTCCTTGAGCAAATTCTTAAAG-CCCTGAGACATCTTCCATTT  228

seq1  CAAGGTCACTTGTGTCCCAGTGACCGAATAATAAGCTTCCTTCCTCTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCACTTGTGTCCCAGTGACCGAATAATAAGCTTCCTTCCTCTTTC  278

seq1  CTCCTCTAAGACATTGTTCTGTGTCTGCTCACTCCGTCCCTTCCCTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTAAGACATTGTTCTGTGTCTGCTCACTCCGTCCCTTCCCTCCTC  328

seq1  TTGGGAAAAGCATGCCTTTCTTAACATGCATAATACTGCTTAATGTTGTG  399
      ||||||||||||||| |||||||||| |||||||| || ||||||| |||
seq2  TTGGGAAAAGCATGCGTTTCTTAACAGGCATAATATTGATTAATGTAGTG  378

seq1  TTACCATACAGAGTATTCTAGTATTTTTCTCCTAATACCAGATCCCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATACAGAGTATTCTAGTATTTTTCTCCTAATACCAGATCCCAGTT  428

seq1  GCTGGAGAGTCCCCAGAGCTTCATTATGCAAATGATCAAAATGACTGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGGAGAGTCCCCAGAGCTTCATTATGCAAATGATCAAAATGACGGGCT  478

seq1  CCTTGAGAAAAATATAATAGCAGTTGTGGGTCTTTTTTTTTTTTTATGTA  549
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CCTTGAGAAAAATATAATAGCAGCCGTGGGTCTTTTTTTTTTTTTATGTA  528

seq1  AGCTTTGCATTGTAGTTAATGACATTAAAACAACCCCTATATTGTATTAT  599
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTTTGCATTGTAGTTAATGACATTGAAACAACCCCTATATTGTATTAT  578

seq1  CTATACTTGTGGACATGCAAATCGATTTCCATACATCATGTATATTTGGG  649
      ||| | | ||||||| |||||||||||||||||||||| | ||||| |||
seq2  CTACATTAGTGGACAGGCAAATCGATTTCCATACATCACGGATATTGGGG  628

seq1  GGGGGGGGACGACACAGCTACTTCTTAGAGTTTACCAAAGAATGGAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGACGACACAGCTACTTCTTAGAGTTTACCAAAGAATGGAAACA  678

seq1  GGAAGCAGAGATTCTCATCACCTTTGGAGTTTTTCAAATATGATAGATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAGATTCTCATCACCTTTGGAGTTTTTCAAATATGATAGATGT  728

seq1  GGCTTCTTCCAGTAATGTGTGATGTGTAATGAAAAGGTACAAGCTGTTTT  799
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  GGCTTCTTCCAGTAATGTGTGATGGGTAATGAAAAGGTACAAGATGTTTT  778

seq1  GTCCTGACACACGCTATTGGGACATTGTTATTTGCATTGAAAGTATTCAC  849
      |||  ||||||||  ||||||||||||||||  |||||||||||||||||
seq2  GTCAAGACACACGACATTGGGACATTGTTATAAGCATTGAAAGTATTCAC  828

seq1  TTAAAAATAAAGATCTAAAAGTAACAGTGATTACACTAACTTCCCCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAGATCTAAAAGTAACAGTGATTACACTAACTTCCCCAAAA  878

seq1  TAACTTTGTAGGAGAAAAGTTTGATTTTCATAGTCAGTTCATAAACATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGTAGGAGAAAAGTTTGATTTTCATAGTCAGTTCATAAACATGT  928

seq1  GTACTTTGTCTTCCCATGATCCTTGGTGACCATATTGTCTAGGGGGAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTGTCTTCCCATGATCCTTGGTGACCATATTGTCTAGGGGGAAAA  978

seq1  ACTCAGAATAAGGAACATTTGCAATTGTGTAATAATCTTGGGGGAGAAAT  1049
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCAGAATAAGGAACATTTGCAATTGAGTAATAATCTTGGGGGAGAAAT  1028

seq1  AATTCAAGAGATGTTGGAATTCC  1072
      |||||||||||   |||||||||
seq2  AATTCAAGAGA--GTGGAATTCC  1049

seq1: chr2_79540645_79541476
seq2: B6Ng01-064L20.g_68_898

seq1  GAATTCTCCTTTATTAGTGTTGCTATCATACGGCTCACTGTCCTGAAGTC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTCCTTTATTAGTGTTGCTATCTTACGGCTCACTGTCCTGAAGTC  50

seq1  ATTAGTGATGTATGATGTTATTGTCAGGGTATCTTCTGAGTAGAGTGGAA  100
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTACTGATGTATGATGTTATTGTCACGGTATCTTCTGAGTAGAGTGGAA  100

seq1  GTTGCTTAAGGATAACTTCATCTTCTAACTACTTTGATTCCCTTGTCTTT  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTGCTTAAGGATAACTGCATCTTCTAACTACTTTGATTCCCTTGTCTTT  150

seq1  GATTCTGTTTTAATTTTGTAAATTATATAGTTGCATACATAACAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTTTAATTTTGTAAATTATATAGTTGCATACATAACAAAAGTA  200

seq1  GAAACCATGTGTTGAACTTCCTATCAGATCTTAGAAAAGTACCAAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAACCATGTGTTGAACTTCCTATCAGATCTTAGAAAAGTACCCAAGCAC  250

seq1  TAAATGAATTTTAAAAATGGCTATTTAGAAGGAAACCACAAGCTTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATTTTAAAAATGGCTATTTAGAAGGAAACCACAAGCTTGCTGG  300

seq1  TCTGCTCTGACAAGAATGCATGGGCAGTCTGTAACATGCACCCAGTGCAT  350
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGAC-TGAATGCATGGGCAGTCTGTAACATGCACCCAGTGCAT  349

seq1  GAGCCTCTCTGTTAGGCCTTCCTTGCTGTGATAGATTGAACCCTGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCTGTTAGGCCTTCCTTGCTGTGATAGATTGAACCCTGAAAAC  399

seq1  CATGAGCTAAATATAGATTTTTTTCTCTTTTAAGTTATTTCTATTTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTAAATATAGATTTTTTTCTCTTTTAAGTTATTTCTATTTGGTA  449

seq1  TCATGGTCATAGCAATACAAAAGGAACTGATGTAAAATACTAGTGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCATAGCAATACAAAAGGAACTGATGTAAAATACTAGTGCCATA  499

seq1  GATGTGGAGGACATTGCTCTGATCAAACCAAGCAATGTAGCTCTTTCTTG  550
      ||||||||||||| ||||||||||| ||| ||||||||| ||||||||||
seq2  GATGTGGAGGACACTGCTCTGATCACACCTAGCAATGTAACTCTTTCTTG  549

seq1  TGGAAGAAATCTAAGAGAGCTTGGGTTTGCAGGCTAGAGAAATCTGAGAA  600
      |||||||||||||||| |||||||||||||  ||||||||||||||||||
seq2  TGGAAGAAATCTAAGAAAGCTTGGGTTTGCCTGCTAGAGAAATCTGAGAA  599

seq1  GGCTGTGAACAGGGTTGAATGTCTGATTCTGATGGATCTCAAGAGAAGAC  650
      ||||||||||||||||||||| ||||||| || | |||||||||||| ||
seq2  GGCTGTGAACAGGGTTGAATGCCTGATTCCGACGCATCTCAAGAGAAAAC  649

seq1  AATGCTTACAGAAATGGAAGCAATTAAAGACAGACTAATGATCTTTCAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  AATGCTTACAGAAATGGAAGCAATTAAAGACAGACTAATGATCTTTCTTA  699

seq1  TGGGGGAACTCTATCTTGGTGTAGATCTTAAACGTTCATGCCAGAGTTTG  750
      ||| |||||||| |||||| |||||||||||| | ||||||||||  |||
seq2  TGGAGGAACTCTCTCTTGGAGTAGATCTTAAATGCTCATGCCAGACATTG  749

seq1  TCAAATAATTTGTTTATGCACTGTGCATATCCTAAAATTGTGACTGAGCC  800
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAAATTATTTGTTTATGCACTGTGCATATCCTAAAATTGTGACTGAACC  799

seq1  AGAAATAAGAAGGAATGGATTGATAATTTGTC  832
      | ||| |  |||||||||||||||||||||||
seq2  ATAAAAACAAAGGAATGGATTGATAATTTGTC  831