BAC Information

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BAC

Clone NameB6Ng01-065F16
Chromosome2 (Build37)
Map Location 102,591,704 - 102,723,406
singlet/doubletdoublet
Overlap geneSlc1a2, Cd44
Upstream gene2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik
Downstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F16.bB6Ng01-065F16.g
ACCDH884853DH884854
length6181,029
definitionDH884853|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F16, 5' end.DH884854|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,591,704 - 102,592,321)(102,722,370 - 102,723,406)
sequence
gaattcttgttgaagtcaggccagggaagccagataccacttggggatgg
tcaactatgaggaacatgatctgaaatgaagagccacacacggaaggtgg
ggattcttgctaagctgactcagtggggttctctgctgaactagtatttc
ttaaaaaaggaggcaaacagatcctacagaaggaaggatctaactgaagt
ttcataaaagcaaagaacttttcccccaacccatttgctctttcactcag
taaataatcccttctaaatggactatgatgtgctataatgatgaatacca
cagaggatttctgcctacatgggcctcccattctagtggaagaagggaca
ggaagtcagactaaaggaaccaaatatgaattcagctagtaatgcaaaca
acaaaagtagggctgtggggtagagagtaagggaagtagacccaagtgac
caggatgggctgtgtgggaatgagacatggtaaagaccctgcagaaaggg
agaagtccgaggaaaggaagcaggaagtgaaaggctattgagggtcacaa
caaagatctggagccagtacagtgaggaaggttaaaaatggtggaaggag
tgggggtggaaaggcagg
gaattctctcttattttaaacaagcaccattaggtaaactccaggcttcc
tttagctgctgcctcttcatagggggaaaaatgcccctttattaagtgtg
tgagcttcctgtttctgtttttggagtgttacagtcatcagccacttctg
gattccgcattgtttgcattgttaaaaaccttggaaaactcatctggttt
cttctccaaacaagtttcccagacacccccaacccccaacccccgggaag
gcattcagaaacaggccccagtttcaaacaggcgaccaagaaacaatgtc
tcctagagccaggcagtttatctttttctaaagtctggaataaaaaatgt
ttactccagactacatagttaagtcctaactgtcagagtcgtctgtgtcc
tgtatgctcaagatgtaatgtgggtcctggcatcacagctggattctagt
cctgccacttgccagttacactgccttaagtgatgcacttagcctctcca
tgtctcatttgtctcttctctgaaacggaggcttaattcccacggcttaa
gcactgctgggatgctgtacatgaagcccttgatagaaagtctggcatgg
aacaagcattcaagagtaataattatgatcatttgttacaatcctaaggc
tccaaggcctctctcttccccattcagtcctaactatgctcctggtacat
ttgaggaacgcttccaactgccttgggaaagtcttcatttcatttctgag
catagtcagctgatgaattctcatttcatttggcggggtcagcatcctaa
aattgtgactcccgcacaggcttactggaacgcttcggaggaaaatgaag
cagctgtgaagttccgggaccctggctgtagctggtgaaggcaactggga
gcacgctttgggcctgtctttacttgcacaattaacagtcatctctcaag
ctgctgttgtcagcaggatcagccttcctgcctcccgttcttccagttac
tggggcaagggaagattgcttttgccggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102591704_102592321
seq2: B6Ng01-065F16.b_49_666

seq1  GAATTCTTGTTGAAGTCAGGCCAGGGAAGCCAGATACCACTTGGGGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGAAGTCAGGCCAGGGAAGCCAGATACCACTTGGGGATGG  50

seq1  TCAACTATGAGGAACATGATCTGAAATGAAGAGCCACACACGGAAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATGAGGAACATGATCTGAAATGAAGAGCCACACACGGAAGGTGG  100

seq1  GGATTCTTGCTAAGCTGACTCAGTGGGGTTCTCTGCTGAACTAGTATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTGCTAAGCTGACTCAGTGGGGTTCTCTGCTGAACTAGTATTTC  150

seq1  TTAAAAAAGGAGGCAAACAGATCCTACAGAAGGAAGGATCTAACTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGGAGGCAAACAGATCCTACAGAAGGAAGGATCTAACTGAAGT  200

seq1  TTCATAAAAGCAAAGAACTTTTCCCCCAACCCATTTGCTCTTTCACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAGCAAAGAACTTTTCCCCCAACCCATTTGCTCTTTCACTCAG  250

seq1  TAAATAATCCCTTCTAAATGGACTATGATGTGCTATAATGATGAATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCCCTTCTAAATGGACTATGATGTGCTATAATGATGAATACCA  300

seq1  CAGAGGATTTCTGCCTACATGGGCCTCCCATTCTAGTGGAAGAAGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATTTCTGCCTACATGGGCCTCCCATTCTAGTGGAAGAAGGGACA  350

seq1  GGAAGTCAGACTAAAGGAACCAAATATGAATTCAGCTAGTAATGCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGACTAAAGGAACCAAATATGAATTCAGCTAGTAATGCAAACA  400

seq1  ACAAAAGTAGGGCTGTGGGGTAGAGAGTAAGGGAAGTAGACCCAAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTAGGGCTGTGGGGTAGAGAGTAAGGGAAGTAGACCCAAGTGAC  450

seq1  CAGGATGGGCTGTGTGGGAATGAGACATGGTAAAGACCCTGCAGAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGCTGTGTGGGAATGAGACATGGTAAAGACCCTGCAGAAAGGG  500

seq1  AGAAGTCCGAGGAAAGGAAGCAGGAAGTGAAAGGCTATTGAGGGTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCGAGGAAAGGAAGCAGGAAGTGAAAGGCTATTGAGGGTCACAA  550

seq1  CAAAGATCTGGAGCCAGTACAGTGAGGAAGGTTAAAAATGGTGGAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCTGGAGCCAGTACAGTGAGGAAGGTTAAAAATGGTGGAAGGAG  600

seq1  TGGGGGTGGAAAGGCAGG  618
      ||||||||||||||||||
seq2  TGGGGGTGGAAAGGCAGG  618

seq1: chr2_102722370_102723406
seq2: B6Ng01-065F16.g_70_1098 (reverse)

seq1  ACAGGCAAAAGCCACTCCTCCCCTTGCCCCCAGTAACTGGAAGAACGGGA  50
      || ||||||||| |   || |||||| |||||||||||||||||||||||
seq2  ACCGGCAAAAGCAA--TCTTCCCTTG-CCCCAGTAACTGGAAGAACGGGA  47

seq1  GGCAGGAAAGGCTGATCCTGCTGACACAGGCAGCCTGAGAGATTGACTG-  99
      |||||| |||||||||||||||||||   ||||| ||||||| |||||| 
seq2  GGCAGG-AAGGCTGATCCTGCTGACAACAGCAGCTTGAGAGA-TGACTGT  95

seq1  TAATTGTGCAAGTAAAGACAGGCCCCAAAGCGTGCTTCCCAGTTTGCTTT  149
      |||||||||||||||||||||| |||||||||||| |||||| |||| ||
seq2  TAATTGTGCAAGTAAAGACAGG-CCCAAAGCGTGC-TCCCAG-TTGCCTT  142

seq1  CACCAGCTACAGCCAAGGTTCCCGGAACTTCACAGCCTGCTTCA-TCTGC  198
      |||||||||||||| ||| |||||||||||||||| |||||||| | | |
seq2  CACCAGCTACAGCC-AGGGTCCCGGAACTTCACAG-CTGCTTCATTTTCC  190

seq1  TCCGAAAGCGTTCCAGTAAGCCTGTGCGGGAGTCACAATTTTAGGATGCT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCG-AAGCGTTCCAGTAAGCCTGTGCGGGAGTCACAATTTTAGGATGCT  239

seq1  GACCCCGCCAAATGAAATGAGAATTCATCAGCTGACTATGCTCAGAAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGCCAAATGAAATGAGAATTCATCAGCTGACTATGCTCAGAAATG  289

seq1  AAATGAAGACTTTCCCAAGGCAGTTGGAAGCGTTCCTCAAATGTACCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGACTTTCCCAAGGCAGTTGGAAGCGTTCCTCAAATGTACCAGG  339

seq1  AGCATAGTTAGGACTGAATGGGGAAGAGAGAGGCCTTGGAGCCTTAGGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTAGGACTGAATGGGGAAGAGAGAGGCCTTGGAGCCTTAGGAT  389

seq1  TGTAAC-AATGATCATAATTATTACTCTTGAATGCTTGTTCCATGCCAGA  447
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAATGATCATAATTATTACTCTTGAATGCTTGTTCCATGCCAGA  439

seq1  CTTTCTATCAAGGGCTTCATGTACAGCATCCCAGCAGTGCTTAAGCCGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCAAGGGCTTCATGTACAGCATCCCAGCAGTGCTTAAGCCGTG  489

seq1  GGAATTAAGCCTCCGTTTCAGAGAAGAGACAAATGAGACATGGAGAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAGCCTCCGTTTCAGAGAAGAGACAAATGAGACATGGAGAGGCT  539

seq1  AAGTGCATCACTTAAGGCAGTGTAACTGGCAAGTGGCAGGACTAGAATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATCACTTAAGGCAGTGTAACTGGCAAGTGGCAGGACTAGAATCC  589

seq1  AGCTGTGATGCCAGGACCCACATTACATCTTGAGCATACAGGACACAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGATGCCAGGACCCACATTACATCTTGAGCATACAGGACACAGAC  639

seq1  GACTCTGACAGTTAGGACTTAACTATGTAGTCTGGAGTAAACATTTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGACAGTTAGGACTTAACTATGTAGTCTGGAGTAAACATTTTTTA  689

seq1  TTCCAGACTTTAGAAAAAGATAAACTGCCTGGCTCTAGGAGACATTGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACTTTAGAAAAAGATAAACTGCCTGGCTCTAGGAGACATTGTTT  739

seq1  CTTGGTCGCCTGTTTGAAACTGGGGCCTGTTTCTGAATGCCTTCCCGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCGCCTGTTTGAAACTGGGGCCTGTTTCTGAATGCCTTCCCGGGG  789

seq1  GTTGGGGGTTGGGGGTGTCTGGGAAACTTGTTTGGAGAAGAAACCAGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGTTGGGGGTGTCTGGGAAACTTGTTTGGAGAAGAAACCAGATG  839

seq1  AGTTTTCCAAGGTTTTTAACAATGCAAACAATGCGGAATCCAGAAGTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCAAGGTTTTTAACAATGCAAACAATGCGGAATCCAGAAGTGGC  889

seq1  TGATGACTGTAACACTCCAAAAACAGAAACAGGAAGCTCACACACTTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTGTAACACTCCAAAAACAGAAACAGGAAGCTCACACACTTAAT  939

seq1  AAAGGGGCATTTTTCCCCCTATGAAGAGGCAGCAGCTAAAGGAAGCCTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCATTTTTCCCCCTATGAAGAGGCAGCAGCTAAAGGAAGCCTGG  989

seq1  AGTTTACCTAATGGTGCTTGTTTAAAATAAGAGAGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACCTAATGGTGCTTGTTTAAAATAAGAGAGAATTC  1029