BAC Information

Click to search

BAC

Clone NameB6Ng01-065H14
Chromosome2 (Build37)
Map Location 59,654,979 - 59,822,733
singlet/doubletdoublet
Overlap geneTanc1, Wdsub1, Baz2b
Upstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H14.bB6Ng01-065H14.g
ACCDH884938DH884939
length1,0941,053
definitionDH884938|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H14, 5' end.DH884939|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,821,629 - 59,822,733)(59,654,979 - 59,656,072)
sequence
gaattctttaaagaacctagaatactgggtttaatactctgttttcatgg
taagagggcaaagtgtcctgattatttcctgtgagtaaaggaaagagtgt
ttttcttgttctgcagctgactacaaatggatttgtgactttatttagaa
aggccttagtaagtgtattaattgtgctgtctttggcactatttgactac
actggtacacgctgccttgggaatcaggatgctctactacgcaaagtcag
acagagaacagaactctgactttgaacgtgaaagtgacatctctgtgcct
gtctgatcatttgaatgattacttggtaacggagttgggtccgtttcgta
ggttttcattgttagatttcttttttttttttcctcaagaacaaaagagt
gtaatgttacactgatgtacctgtattgacaaaactgaccacttcctcag
ttcagatacaaaaattattttcttggcatctgttctaacatctgaaattc
aaactactgagggtcttctactcataaccttaaaatggttttgtgtttct
ggaaacattctgtagggtttgaagagtataacttaaagaagaaaatataa
tataaaaattgaatagctatttttgtaagcttcgagaatgctgcaattag
gtaacgctcgtctgttgtatctgaacgactttaagtgtgtttttttcccc
tcccaggacatttattcagagcagctggggatcagccgtttaacctgtcc
acagtgccgagtgccttcccaatgctcagccacccaggctttggtctaca
ttcagccagctcagggcattcagaatttggtggtttggggacacttggta
cacccacagccttagccgcacatcccagctaacatcttttccaggtaaac
aacttttatggtgtaggaaaggagaaagcttgggaaacccggcagtgttt
gtttcttaaactgagcagcagagtgcatgggtagactcctggggcagatt
tggcttcggtttatcacatgcagcaaacggagctcgatttgtgtggtaag
catgcagcactcactcgatagatactcacttgtcctaacgaata
gaattcaggggtgcctgcaagcatcaggcctttaggagacatgcggcact
cacacatttcttctaactccctggcacccccaacttgtgtctttccttta
taataaaagccaagatgcctccctgtatgttttcctttctgtccttccta
tagatcaatgttctattctataagtcccttcctttctttggctccctggt
ttagtgaccaacctccctcccatctcaacatctgaaaatacttcatctta
gtgtcccactgggaagcatagggctttgtctgagggttcagtctgtgagc
tttatgtagtctgctgcgagatgcctgagtgaggagactgtcttgtggtt
actagtcctgccaagggaacctgaggcatggattagtgttcttatcccag
tgaaaggagtcacaggttcagagctgtccagaaagacaagttggaatgtg
aacccttgctcttctgcagtagcgtgaatttgcatgtagccttcagggca
catgtgtgtgctcccagagtaaaaggatgctcaccgttacctttccccga
cttgtgcccccaggtggaccacttggataagaagggccagtgtgcactcg
tccacagcgcactgaggggccacagtgacattctccagtacctgctgaac
tgtgagtggtcggcaggccctccccagcctggcaccctgaggaagagcca
agccctgcagcagcactgacagccgccgccagcatgggccacagctcggt
gagtgggccgtgggggtccttcccgagacatgagctttgcggcccagttg
tttggtcacagccttctaagttgagagccacaggcaacaaagggaatgga
gattcagaaagttgctgtgaccctgaccatggagtgcttctagtgctgct
gtctgctgtgacagtggggatgaatgctctctcagagcctgctgctgttc
agtttctccgctctcactctctctgtttgctcttccttactggctcttcc
tccgtccctcagtcttctttgtccttatataagctaactacaatcatgga
acc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59821629_59822733
seq2: B6Ng01-065H14.b_45_1138 (reverse)

seq1  TATTCGTTCTAGGACAAGTGAGTATCTAATCGAGTGAGTGCTGCATGCTT  50
      |||||||  |||||||||||||||||| |||||||||||||||||||| |
seq2  TATTCGT--TAGGACAAGTGAGTATCT-ATCGAGTGAGTGCTGCATGC-T  46

seq1  TAACACACATATCGAGCTCCGGTTTGCTGCATGTGATAAAACGGAGCCAA  100
      || |||||| |||||||||| ||||||||||||||||||| || ||||||
seq2  TACCACACAAATCGAGCTCC-GTTTGCTGCATGTGATAAACCGAAGCCAA  95

seq1  ATCTTGCCCCA-GAGTCTAACACATGCCACTCTGCTGCTCAGTTTAAGAA  149
      ||| ||||||| |||||| || |||| |||||||||||||||||||||||
seq2  ATC-TGCCCCAGGAGTCT-ACCCATG-CACTCTGCTGCTCAGTTTAAGAA  142

seq1  ACAAACACTGCCCGGGTTTTCCCAAGCTTTTCTCCTTTCCTACACCATAA  199
      ||||||||||||  || |||||||||| ||||||||||||||||||||||
seq2  ACAAACACTGCC--GGGTTTCCCAAGC-TTTCTCCTTTCCTACACCATAA  189

seq1  AGGTTGTTTACCTGGAAAAGATGTTAGCTGGGGATGTGCGGCTAAGGCTG  249
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGTTGTTTACCTGGAAAAGATGTTAGCT-GGGATGTGCGGCTAAGGCTG  238

seq1  TGGGTGTACCAAGTGTCCCCAAACCACCAAATTCTGAATGCCCTGAGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTACCAAGTGTCCCCAAACCACCAAATTCTGAATGCCCTGAGCTG  288

seq1  GCTGAATGTAGACCAAAGCCTGGGTGGCTGAGCATTGGGAAGGCACTCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGTAGACCAAAGCCTGGGTGGCTGAGCATTGGGAAGGCACTCGG  338

seq1  CACTGTGGACAGGTTAAACGGCTGATCCCCAGCTGCTCTGAATAAATGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGACAGGTTAAACGGCTGATCCCCAGCTGCTCTGAATAAATGTC  388

seq1  CTGGGAGGGGAAAAAAACACACTTAAAGTCGTTCAGATACAACAGACGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGGAAAAAAACACACTTAAAGTCGTTCAGATACAACAGACGAG  438

seq1  CGTTACCTAATTGCAGCATTCTCGAAGCTTACAAAAATAGCTATTCAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCTAATTGCAGCATTCTCGAAGCTTACAAAAATAGCTATTCAATT  488

seq1  TTTATATTATATTTTCTTCTTTAAGTTATACTCTTCAAACCCTACAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATATTTTCTTCTTTAAGTTATACTCTTCAAACCCTACAGAAT  538

seq1  GTTTCCAGAAACACAAAACCATTTTAAGGTTATGAGTAGAAGACCCTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGAAACACAAAACCATTTTAAGGTTATGAGTAGAAGACCCTCAG  588

seq1  TAGTTTGAATTTCAGATGTTAGAACAGATGCCAAGAAAATAATTTTTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAATTTCAGATGTTAGAACAGATGCCAAGAAAATAATTTTTGTA  638

seq1  TCTGAACTGAGGAAGTGGTCAGTTTTGTCAATACAGGTACATCAGTGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGAGGAAGTGGTCAGTTTTGTCAATACAGGTACATCAGTGTAA  688

seq1  CATTACACTCTTTTGTTCTTGAGGAAAAAAAAAAAAGAAATCTAACAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACACTCTTTTGTTCTTGAGGAAAAAAAAAAAAGAAATCTAACAATG  738

seq1  AAAACCTACGAAACGGACCCAACTCCGTTACCAAGTAATCATTCAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACGAAACGGACCCAACTCCGTTACCAAGTAATCATTCAAATGA  788

seq1  TCAGACAGGCACAGAGATGTCACTTTCACGTTCAAAGTCAGAGTTCTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGGCACAGAGATGTCACTTTCACGTTCAAAGTCAGAGTTCTGTT  838

seq1  CTCTGTCTGACTTTGCGTAGTAGAGCATCCTGATTCCCAAGGCAGCGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGACTTTGCGTAGTAGAGCATCCTGATTCCCAAGGCAGCGTGT  888

seq1  ACCAGTGTAGTCAAATAGTGCCAAAGACAGCACAATTAATACACTTACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTAGTCAAATAGTGCCAAAGACAGCACAATTAATACACTTACTA  938

seq1  AGGCCTTTCTAAATAAAGTCACAAATCCATTTGTAGTCAGCTGCAGAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTCTAAATAAAGTCACAAATCCATTTGTAGTCAGCTGCAGAACA  988

seq1  AGAAAAACACTCTTTCCTTTACTCACAGGAAATAATCAGGACACTTTGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACACTCTTTCCTTTACTCACAGGAAATAATCAGGACACTTTGCC  1038

seq1  CTCTTACCATGAAAACAGAGTATTAAACCCAGTATTCTAGGTTCTTTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCATGAAAACAGAGTATTAAACCCAGTATTCTAGGTTCTTTAAA  1088

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1094

seq1: chr2_59654979_59656072
seq2: B6Ng01-065H14.g_68_1120

seq1  GAATTCAGGGGTGCCTGCAAGCATCAGGCCTTTAGGAGACATGCGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTGCCTGCAAGCATCAGGCCTTTAGGAGACATGCGGCACT  50

seq1  CACACATTTCTTCTAACTCCCTGGCACCCCCAACTTGTGTCTTTCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTTCTTCTAACTCCCTGGCACCCCCAACTTGTGTCTTTCCTTTA  100

seq1  TAATAAAAGCCAAGATGCCTCCCTGTATGTTTTCCTTTCTGTCCTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGCCAAGATGCCTCCCTGTATGTTTTCCTTTCTGTCCTTCCTA  150

seq1  TAGATCAATGTTCTATTCTATAAGTCCCTTCCTTTCTTTGGCTCCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAATGTTCTATTCTATAAGTCCCTTCCTTTCTTTGGCTCCCTGGT  200

seq1  TTAGTGACCAACCTCCCTCCCATCTCAACATCTGAAAATACTTCATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACCAACCTCCCTCCCATCTCAACATCTGAAAATACTTCATCTTA  250

seq1  GTGTCCCACTGGGAAGCATAGGGCTTTGTCTGAGGGTTCAGTCTGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCACTGGGAAGCATAGGGCTTTGTCTGAGGGTTCAGTCTGTGAGC  300

seq1  TTTATGTAGTCTGCTGCGAGATGCCTGAGTGAGGAGACTGTCTTGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGTCTGCTGCGAGATGCCTGAGTGAGGAGACTGTCTTGTGGTT  350

seq1  ACTAGTCCTGCCAAGGGAACCTGAGGCATGGATTAGTGTTCTTATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCTGCCAAGGGAACCTGAGGCATGGATTAGTGTTCTTATCCCAG  400

seq1  TGAAAGGAGTCACAGGTTCAGAGCTGTCCAGAAAGACAAGTTGGAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGTCACAGGTTCAGAGCTGTCCAGAAAGACAAGTTGGAATGTG  450

seq1  AACCCTTGCTCTTCTGCAGTAGCGTGAATTTGCATGTAGCCTTCAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGCTCTTCTGCAGTAGCGTGAATTTGCATGTAGCCTTCAGGGCA  500

seq1  CATGTGTGTGCTCCCAGAGTAAAAGGATGCTCACCGTTACCTTTCCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGCTCCCAGAGTAAAAGGATGCTCACCGTTACCTTTCCCCGA  550

seq1  CTTGTGCCCCCAGGTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCCCCAGGTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCG  600

seq1  TCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAAC  650

seq1  TGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCA  700

seq1  AGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCGG  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCAGCA-GCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCGG  749

seq1  TGAGTGGGGCCGTGGGGGTTCCTTCCCGAGACATGAGGCTTTGCGGCCCA  800
      ||||| |||||||||||| ||||||||||||||||| |||||||||||||
seq2  TGAGT-GGGCCGTGGGGG-TCCTTCCCGAGACATGA-GCTTTGCGGCCCA  796

seq1  GTTGTTTGGTCACAGCCTTCTAAGTTGAGAGCCACAGGCAACAAAAGGGA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTGTTTGGTCACAGCCTTCTAAGTTGAGAGCCACAGGCAAC-AAAGGGA  845

seq1  ATGGAGATTTCAGAAAGTTGCTGTTGACCCTGACCAATGGAGTGCTTCTA  900
      ||||||| ||||||||||||||| ||||||||||| ||||||||||||||
seq2  ATGGAGA-TTCAGAAAGTTGCTG-TGACCCTGACC-ATGGAGTGCTTCTA  892

seq1  GTGCTGCTGTCCTGGCTGTGACCAAGGTGGGGGATGAAATGCTCTCCTCA  950
      |||||||||||   ||||||||  ||   ||||||| |||||||| ||||
seq2  GTGCTGCTGTC--TGCTGTGAC--AG--TGGGGATG-AATGCTCT-CTCA  934

seq1  GGAGCCCTGCTGGCTGTTCAGTCTCTCCCGCTCTCACTTCCTCTCCTGTT  1000
       ||| |||||| |||||||||| ||| |||||||||||  |||| |||||
seq2  -GAG-CCTGCT-GCTGTTCAGTTTCT-CCGCTCTCACT--CTCT-CTGTT  977

seq1  TGCTCTTCCTTTACCTGGCTCTTCCCTCCCGGTCCCTTCAGTTCCTTCTT  1050
      |||||||||||   ||||||||| |||||  ||||| |||||  |||| |
seq2  TGCTCTTCCTT--ACTGGCTCTT-CCTCC--GTCCC-TCAGT--CTTC-T  1018

seq1  TTGTCCCTATATATATAGCCTTTAGACTACAATCACATGGAACC  1094
      |||||| ||||||   |||   || ||||||||  |||||||||
seq2  TTGTCCTTATATA---AGC---TA-ACTACAAT--CATGGAACC  1053