BAC Information

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BAC

Clone NameB6Ng01-065J10
Chromosome2 (Build37)
Map Location 129,407,736 - 129,557,180
singlet/doubletdoublet
Overlap geneSirpa, Pdyn
Upstream geneLOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
Downstream genePpia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065J10.bB6Ng01-065J10.g
ACCDH885018DH885019
length1,001233
definitionDH885018|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J10, 5' end.DH885019|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,556,636 - 129,557,180)(129,407,736 - 129,407,968)
sequence
gaattcttaggagaagctgtcatatcagctttaaatttttttccttaatt
acaaatgttggcacgtcttttaaaaaacaatctggcagcatatagtgcat
gacttagaatgcttatgtttggaagcaaaagctctaatgtaaatggttta
caaaagaaatggaatttattatttatcatgattttaaaatattaatttcc
aaaatcccagccttacttgctgggaaaaaaagacatagcagggcatatta
ccagaggaaatttgtgtaaggttctttgaccttttgagaaacagaagacc
tggatagacagtgtatccctagatatcagggaaatggataaattgcagta
cagccctgcttggaattagtcccatcctgaacactttaatacctctgatg
aaaaaggaaaggtgtcatgaaccaaaaagacaggagttaatacacatttt
ttattaaaaagactgagtattaatggtctctattctgctagtaagatgat
atagactaacatattggagtagaaaacaggatctgcctctttgtcgtctc
agaggaatacacctaaccaacaaagacaaatatctccttagggtaaatgg
gtagaaaaatgtattctaagcaaatagaactaagaaacagtaagtgtagc
tattctaatatctgacaagatcaacttctactgaaaacaagtcagaaaac
atatgaagtaaacacagagactcccaattctatgaaagaaacactgttga
atacaaatcacattgtatcccagcagagtgatcatgagttattttaatac
ccctctcttacaaactgatcatctaaaaataagctaaaagagaaactata
gaagtaaatgacatcataaatcaaagggcttaacagatatctacagaaca
ttcaacccaacagtaaagagcttatttttctcagcacccatgaaacattc
tccaaagttgattacatataggaacaagcatattcacaaatatgaaaatt
g
caagagcacctctctccacatccgctgagaaaccaactctgaagtctgtt
tcctgaccctgtggacccctgggggacaatagcagagactgatagtcctc
cttcctgaacctttctaatgctgcacaggtcatttggatcttctccatct
ccactcaacagttctgcagagtttaggcttcagagctgaccccagcatcc
ccaggccaggaggtaggggtagggtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129556636_129557180
seq2: B6Ng01-065J10.b_45_589 (reverse)

seq1  GACAAAGAGGCAGATCCTGTTTTCTACTCCAATATGTTAGTCTATATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGGCAGATCCTGTTTTCTACTCCAATATGTTAGTCTATATCAT  50

seq1  CTTACTAGCAGAATAGAGACCATTAATACTCAGTCTTTTTAATAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGCAGAATAGAGACCATTAATACTCAGTCTTTTTAATAAAAAAT  100

seq1  GTGTATTAACTCCTGTCTTTTTGGTTCATGACACCTTTCCTTTTTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAACTCCTGTCTTTTTGGTTCATGACACCTTTCCTTTTTCATCA  150

seq1  GAGGTATTAAAGTGTTCAGGATGGGACTAATTCCAAGCAGGGCTGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTAAAGTGTTCAGGATGGGACTAATTCCAAGCAGGGCTGTACTG  200

seq1  CAATTTATCCATTTCCCTGATATCTAGGGATACACTGTCTATCCAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCCATTTCCCTGATATCTAGGGATACACTGTCTATCCAGGTCT  250

seq1  TCTGTTTCTCAAAAGGTCAAAGAACCTTACACAAATTTCCTCTGGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTCAAAAGGTCAAAGAACCTTACACAAATTTCCTCTGGTAATA  300

seq1  TGCCCTGCTATGTCTTTTTTTCCCAGCAAGTAAGGCTGGGATTTTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCTATGTCTTTTTTTCCCAGCAAGTAAGGCTGGGATTTTGGAAA  350

seq1  TTAATATTTTAAAATCATGATAAATAATAAATTCCATTTCTTTTGTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTTAAAATCATGATAAATAATAAATTCCATTTCTTTTGTAAAC  400

seq1  CATTTACATTAGAGCTTTTGCTTCCAAACATAAGCATTCTAAGTCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTAGAGCTTTTGCTTCCAAACATAAGCATTCTAAGTCATGCA  450

seq1  CTATATGCTGCCAGATTGTTTTTTAAAAGACGTGCCAACATTTGTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGCTGCCAGATTGTTTTTTAAAAGACGTGCCAACATTTGTAATTA  500

seq1  AGGAAAAAAATTTAAAGCTGATATGACAGCTTCTCCTAAGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATTTAAAGCTGATATGACAGCTTCTCCTAAGAATTC  545

seq1: chr2_129407736_129407968
seq2: B6Ng01-065J10.g_74_306

seq1  CAAGAGCACCTCTCTCCACATCCGCTGAGAAACCAACTCTGAAGTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACCTCTCTCCACATCCGCTGAGAAACCAACTCTGAAGTCTGTT  50

seq1  TCCTGACCCTGTGGACCCCTGGGGGACAATAGCAGAGACTGATAGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCCTGTGGACCCCTGGGGGACAATAGCAGAGACTGATAGTCCTC  100

seq1  CTTCCTGAACCTTTCTAATGCTGCACAGGTCATTTGGATCTTCTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAACCTTTCTAATGCTGCACAGGTCATTTGGATCTTCTCCATCT  150

seq1  CCACTCAACAGTTCTGCAGAGTTTAGGCTTCAGAGCTGACCCCAGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAACAGTTCTGCAGAGTTTAGGCTTCAGAGCTGACCCCAGCATCC  200

seq1  CCAGGCCAGGAGGTAGGGGTAGGGTGGGGGTGG  233
      |||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGGAGGTAGGGGTAGGGTGGGGGTGG  233