BAC Information

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BAC

Clone NameB6Ng01-065J14
Chromosome2 (Build37)
Map Location 74,051,240 - 74,158,914
singlet/doubletdoublet
Overlap genenone
Upstream geneGtpbp9, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065J14.bB6Ng01-065J14.g
ACCDH885024DH885025
length1,0541,105
definitionDH885024|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J14, 5' end.DH885025|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,051,240 - 74,052,296)(74,157,799 - 74,158,914)
sequence
gaattctctgaactattacctcctcctagtttcactaacatgttaaccta
cttacagcaattagtgcttcattagtaaggctaactaactgttgccgggc
cctgtaatgactcgccaggctttccagatacaagcgcataatcaatgttt
tccaattacttctatagtgcagccactatttcaaataaactagataataa
tacaaagccattactggagctgaagtagcagaggcatttaattgcaaggc
agttcttctcagcttttaaaatttttcacactaatgaagtgtcatacaaa
aaagttgtattgatttttccaccacatggcttcaaccacaaatatgtaat
tatcccttttatatctagctgggggattaaaataatctatagtatatagc
ctttacttatccctgatgggtttagtagtgcttttacccttttcaaaata
tgcggccctttgatgaatgaactttaggcaaaatgttgctttatctgttt
caaacctttgctttttaaagtcagtttgtgtgcaggaattaaagtctgaa
atcacaagcttccagacctgaagacgacattccagtacattcgcatacta
ttccattcgctgaaagcatcatggatattttttctccactacagaagtca
acatgggcggatgtaatagctcggtgtttgcacctacatttgcatttcac
tatacttacatttttatttccagctaacactttattaaccgcattatatt
ttaataggaatagagtggcttctacattaattggagccaattctttccca
ggcttttcaggggcggggaggtaacaataacccactggcattaaacttct
tattttctcattacagtttggtcaataaagggggggggaagtattttctt
tttaaaagagaaggtcattataagaataaatgattttgcagagaccagga
actaatgtcaagagcatgggcctttttaaaaaatacctcatctttttgat
ctttttacatataatcggtttttaactctttctcaggtttcttccttttc
tttc
gaattcctatggtgggattctctcctggacattaatgcattttttaaata
aatgaattgttagaaagtgccaaacttctgtttatctgttcaggtttact
taagttgtagcagaaggtagggtcagaggtggactggtggaaggctgggg
acataaaacgcatattttagcatttgaaatttaaatcctctttagataaa
gctatcaaggggctgtgtgtagctttacttctgactctcacttcttttct
taggcaggaaaggacttgagtaaggatggaccttgaggggcagcatgaag
aacctatgtgtgttcatgagtagatatgggtacaggagcaggggtgagcg
ggcaccgcaagacagtgagaatcttgtttcttctaggttcagggcgagca
gttgaataccttaatatgaaaacccaaaatctgagatactccaacatgcc
aaaatgctcagattttaagattctatttccatgtgtatgttttatgtcca
catgggggtatgtgaacttgagtgtcgttcctgttgaaaccagagattta
ggatccctggggctggagttacaggtggttgtgagctgcacaatatggga
caaggaactgaactcaggtcctctaatcccaatatccaaaatatttaagc
actgatctgacatcagaaatggaaaatactgtgaaacactgtttcatgca
caaatatgcaacactgcctttaggatgtctatttatctatgaatcaaaga
ttctgtgttaggtttgggtcctattcccaagatatctcattttgtagtca
cacacacacacacacacacacacaggtccaaaatccttctggcctcaagt
tttggaaagaaatattggagctgtactttaatgtcccaacactgccattg
gctcaatgaatattttgggcagctttgagtccaaatactgaagattagcc
aatggctcccctagttggaatgaaagtagaggctagaagctagggggcct
aagagcttaaatatatgtacccaagaggtggtggtctggtccaggccaca
cctgctggatgtaacaaggcacgagataaattcctgtgaaactcttggaa
tgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74051240_74052296
seq2: B6Ng01-065J14.b_40_1093

seq1  GAATTCTCTGAACTATTACCTCCTCCTAGTTTCACTAACATGTTAACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACTATTACCTCCTCCTAGTTTCACTAACATGTTAACCTA  50

seq1  CTTACAGCAATTAGTGCTTCATTAGTAAGGCTAACTAACTGTTGCCGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCAATTAGTGCTTCATTAGTAAGGCTAACTAACTGTTGCCGGGC  100

seq1  CCTGTAATGACTCGCCAGGCTTTCCAGATACAAGCGCATAATCAATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATGACTCGCCAGGCTTTCCAGATACAAGCGCATAATCAATGTTT  150

seq1  TCCAATTACTTCTATAGTGCAGCCACTATTTCAAATAAACTAGATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTACTTCTATAGTGCAGCCACTATTTCAAATAAACTAGATAATAA  200

seq1  TACAAAGCCATTACTGGAGCTGAAGTAGCAGAGGCATTTAATTGCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCCATTACTGGAGCTGAAGTAGCAGAGGCATTTAATTGCAAGGC  250

seq1  AGTTCTTCTCAGCTTTTAAAATTTTTCACACTAATGAAGTGTCATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTCAGCTTTTAAAATTTTTCACACTAATGAAGTGTCATACAAA  300

seq1  AAAGTTGTATTGATTTTTCCACCACATGGCTTCAACCACAAATATGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTATTGATTTTTCCACCACATGGCTTCAACCACAAATATGTAAT  350

seq1  TATCCCTTTTATATCTAGCTGGGGGATTAAAATAATCTATAGTATATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTTTATATCTAGCTGGGGGATTAAAATAATCTATAGTATATAGC  400

seq1  CTTTACTTATCCCTGATGGGTTTAGTAGTGCTTTTACCCTTTTCAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTATCCCTGATGGGTTTAGTAGTGCTTTTACCCTTTTCAAAATA  450

seq1  TGCGGCCCTTTGATGAATGAACTTTAGGCAAAATGTTGCTTTATCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCCCTTTGATGAATGAACTTTAGGCAAAATGTTGCTTTATCTGTTT  500

seq1  CAAACCTTTGCTTTTTAAAGTCAGTTTGTGTGCAGGAATTAAAGTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTGCTTTTTAAAGTCAGTTTGTGTGCAGGAATTAAAGTCTGAA  550

seq1  ATCACAAGCTTCCAGACCTGAAGACGACATTCCAGTACATTCGCATACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGCTTCCAGACCTGAAGACGACATTCCAGTACATTCGCATACTA  600

seq1  TTCCATTCGCTGAAAGCATCATGGATATTTTTTCTCCACTACAGAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCGCTGAAAGCATCATGGATATTTTTTCTCCACTACAGAAGTCA  650

seq1  ACATGGGCGGATGTAATAGCTCGGTGTTTGCACCTACATTTGCATTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCGGATGTAATAGCTCGGTGTTTGCACCTACATTTGCATTTCAC  700

seq1  TATACTTACATTTTTATTTCCAGCTAACACTTTATTAACCGCATTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTACATTTTTATTTCCAGCTAACACTTTATTAACCGCATTATATT  750

seq1  TTAATAGGAATAGAGTGGCTTCTACATTAATTGGAGCCAATTCTTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGAATAGAGTGGCTTCTACATTAATTGGAGCCAATTCTTTCCCA  800

seq1  GGCTTTTCAGGGGGCGGGGAGGTAACAATAACCCACTGGCATTAAACTTC  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCA-GGGGCGGGGAGGTAACAATAACCCACTGGCATTAAACTTC  849

seq1  TTATTTTCTCATTACAGTTTGGTCAATAAAGGGGGGGGGAAGTATTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTCATTACAGTTTGGTCAATAAAGGGGGGGGGAAGTATTTTCT  899

seq1  TTATAAAAAGAGAAGGTCATTATAAGAATAAAATGAATTTTGCAGAGACC  950
      || | |||||||||||||||||||||||| ||||| ||||||||||||||
seq2  TT-TTAAAAGAGAAGGTCATTATAAGAAT-AAATG-ATTTTGCAGAGACC  946

seq1  AGGAACTAATGTCAAGAGCATGGGCCTTTTTAAAAAAATTACCTCATCTT  1000
      |||||||||||||||||||||||||||||||||||||  ||||||||| |
seq2  AGGAACTAATGTCAAGAGCATGGGCCTTTTTAAAAAA--TACCTCATC-T  993

seq1  TTTTGATCTTTTTACATATAAATCGGTCTCTTTAAACTCTTTCTTCAGTT  1050
      ||||||||||||||||||| |||||||   ||| ||||||||| |||| |
seq2  TTTTGATCTTTTTACATAT-AATCGGT---TTTTAACTCTTTC-TCAGGT  1038

seq1  TTCTTTC---------  1057
      ||||| |         
seq2  TTCTTCCTTTTCTTTC  1054

seq1: chr2_74157799_74158914
seq2: B6Ng01-065J14.g_68_1172 (reverse)

seq1  AATCATTCCCAAGAGTTTACACATAGGAATCTAATCAC-TGCTCTGTTAC  49
      ||||||| ||||||||||   || |||||| | ||| | |||  ||||||
seq2  AATCATT-CCAAGAGTTT---CACAGGAAT-TTATCTCGTGCCTTGTTAC  45

seq1  ATCCAGCA-GTGTGGCCTGGAACAAGACCTCCCACCTCTTGGAGCTACAT  98
      |||||||| ||||||||||| || |||||  ||||||||||  | |||||
seq2  ATCCAGCAGGTGTGGCCTGG-ACCAGACC-ACCACCTCTTG--GGTACAT  91

seq1  -TATCTAAGCTCTAAGCCCCCCTAGC-TCTAGCCTCCTACTTTCAATTTC  146
       ||| |||||||| || ||||||||| |||||||| |||||||||  |||
seq2  ATATTTAAGCTCTTAGGCCCCCTAGCTTCTAGCCT-CTACTTTCA--TTC  138

seq1  AAACTAGGGGTAGCCATTGGCTAATC-TCAGTATCTGGGACTCAAAGCTG  195
       ||||||||| ||||||||||||||| ||||||| | |||||||||||||
seq2  CAACTAGGGG-AGCCATTGGCTAATCTTCAGTAT-TTGGACTCAAAGCTG  186

seq1  -CCAATATATTCACTGAGCCAATGGCAGTGTTGGGACATTAAAGTACAGC  244
       |||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATATTCATTGAGCCAATGGCAGTGTTGGGACATTAAAGTACAGC  236

seq1  TCCAATATTTCTTATCCAAAACTTGAGGCCAGAAGGATTTTGGACCTGTG  294
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTTCTT-TCCAAAACTTGAGGCCAGAAGGATTTTGGACCTGTG  285

seq1  TGTGTGTGTGTGTGTGTGTGTGACTACAAAATGAGATATCTTGGGAATAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGACTACAAAATGAGATATCTTGGGAATAG  335

seq1  GACCCAAACCTAAACACAGAATCTTTGATTCATAGATAAATAGACATCCT  394
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAACCT-AACACAGAATCTTTGATTCATAGATAAATAGACATCCT  384

seq1  AAAGGCAGTGTTGCATATTTTGTGCATGAAACAGTGTTTCACAGTATTTT  444
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGGCAGTGTTGCATA-TTTGTGCATGAAACAGTGTTTCACAGTATTTT  433

seq1  CCATTTCTGATGTCAGATCAGTGCTTAAATATTTTGGATATTGGGATTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGATGTCAGATCAGTGCTTAAATATTTTGGATATTGGGATTAG  483

seq1  AGGACCTGAGTTCAGTTCCTTGTCCCATATTGTGCAGCTCACAACCACCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGAGTTCAGTTCCTTGTCCCATATTGTGCAGCTCACAACCACCT  533

seq1  GTAACTCCAGCCCCAGGGATCCTAAATCTCTGGTTTCAACAGGAACGACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCAGCCCCAGGGATCCTAAATCTCTGGTTTCAACAGGAACGACA  583

seq1  CTCAAGTTCACATACCCCCATGTGGACATAAAACATACACATGGAAATAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTCACATACCCCCATGTGGACATAAAACATACACATGGAAATAG  633

seq1  AATCTTAAAATCTGAGCATTTTGGCATGTTGGAGTATCTCAGATTTTGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAATCTGAGCATTTTGGCATGTTGGAGTATCTCAGATTTTGGG  683

seq1  TTTTCATATTAAGGTATTCAACTGCTCGCCCTGAACCTAGAAGAAACAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTAAGGTATTCAACTGCTCGCCCTGAACCTAGAAGAAACAAG  733

seq1  ATTCTCACTGTCTTGCGGTGCCCGCTCACCCCTGCTCCTGTACCCATATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGTCTTGCGGTGCCCGCTCACCCCTGCTCCTGTACCCATATC  783

seq1  TACTCATGAACACACATAGGTTCTTCATGCTGCCCCTCAAGGTCCATCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAACACACATAGGTTCTTCATGCTGCCCCTCAAGGTCCATCCT  833

seq1  TACTCAAGTCCTTTCCTGCCTAAGAAAAGAAGTGAGAGTCAGAAGTAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGTCCTTTCCTGCCTAAGAAAAGAAGTGAGAGTCAGAAGTAAAG  883

seq1  CTACACACAGCCCCTTGATAGCTTTATCTAAAGAGGATTTAAATTTCAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACAGCCCCTTGATAGCTTTATCTAAAGAGGATTTAAATTTCAAA  933

seq1  TGCTAAAATATGCGTTTTATGTCCCCAGCCTTCCACCAGTCCACCTCTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATATGCGTTTTATGTCCCCAGCCTTCCACCAGTCCACCTCTGA  983

seq1  CCCTACCTTCTGCTACAACTTAAGTAAACCTGAACAGATAAACAGAAGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTTCTGCTACAACTTAAGTAAACCTGAACAGATAAACAGAAGTT  1033

seq1  TGGCACTTTCTAACAATTCATTTATTTAAAAAATGCATTAATGTCCAGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTTCTAACAATTCATTTATTTAAAAAATGCATTAATGTCCAGGA  1083

seq1  GAGAATCCCACCATAGGAATTC  1116
      ||||||||||||||||||||||
seq2  GAGAATCCCACCATAGGAATTC  1105