BAC Information

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BAC

Clone NameB6Ng01-066F15
Chromosome2 (Build37)
Map Location 112,222,063 - 112,356,295
singlet/doubletdoublet
Overlap gene2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Upstream geneLOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839
Downstream geneRyr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F15.bB6Ng01-066F15.g
ACCDH885553DH885554
length1,0681,116
definitionDH885553|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F15, 5' end.DH885554|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,222,063 - 112,223,149)(112,355,165 - 112,356,295)
sequence
gaattccccagaaacttgagggccaccttacctgcagtattattgcagca
tggtaaaaacaagagagactctaactctagggcttggagagatggctcag
tggttaagagcactgactgctcttccagaggtcctgagttcaattcccag
cacccacatggtggctcacagccatctgtaatgggattcagtgccctcta
atggtgtgtctgaagacagccacagtgcactcatatacataacttaaata
ttcttttgaaaaaaaagaaggactcttcagcaaggtagacgtgaaagcca
attcccttaaagttgtcctttgacctctatttgcactctggcatgtgcat
gcacacacaatatttaataaataattttaaattatttttttaaaagttta
aatacatcacttataaataccccaatagaacaactgttaatgttttgatg
tatggcttcttttgaagctttttaaaggctgatagtacttttctttttat
aaaactgggattatgggctagagagacagctcagaagttaagagcagttg
ctgttcttgcagagaaaccaggttgagtttccaacgcacacatcagatgg
cttataatgtactgactccagttccaaggcccctgttctggtctctgcac
atacatgtatgtgacacacattcaggaaagcccacacacataaactaata
caaataagtacattaaaaatacatatcttttcattgtttaaacaaatact
ttttttttttttttttttttttttatttttttttttttgagatttttttg
agaaagggtttctctgtgtaatctgtctattctggaactcactctgtaaa
ccaggctggccctgaatttaaaatccgcctgtggctgccctcccagtgct
gggaataaagtgggcgccaccacttacccggctaacaatactccttaagg
gacaggagagatagttgatctgtgaagttctttttttgcaagacttgggt
tcagttccagtacaatgtggtgctccaagccaccatattccagttagcat
cgatgccatcttctgacc
gaattctctagcaattcatcaaaggtacaagtgctggttccttaacttca
ctgcaaaagagcaatcaactgtccagagtgactgtttcgacattagcaaa
caccaagtgggtaagatagaaactcactccttaattaccagttctcgaaa
gttaactgctgtgcctggaaaactcacctggagatcagttgtaaacaccg
ctccctcagagcctttgagcttgctgtctttgccttggaaactcttctgt
atacccacagtgcttcctccctcatcgtccccaggactttaaacaaacct
tctcagtaagaacttctctgaccactctataaaacggcaatagcccttcc
ccactgattcctatccccaagcaattgccataatttagtgtattaattta
tataaagaagaacagagctaaaactcagaactgctgtaaggagcagagac
ggtgtatctggaggatacttgtcaaatgatcagggaatgaaacacagctc
ggcagaagaccatcacagctgctctgcaacatgcacgaaaaggcagggcg
gctcttctcagtagcccgctgcagtgagaagccaataaatcagccgcaga
atggagaagaaacggaagagctcagcaaagacatgacaactgaagtctct
caagacggataatcaaacctctgagaagaaatcagtatgcagactatcaa
aacataacagaggattccaccatgtgcctgactttaacttatataaataa
aatgttaaaaaaaaaataaccaaaatcataaaccaatgaacattccttct
gggttagactacagttttaattgaattcaaacatgcatgcagtatctccg
accgaattaaacccacatgtagaatagaagctaatttaatcgcattattt
caatttttcctccaagatctttttagctaaatagctggtaagaattaact
agccatttacctgtttccttcctcctacctgataaaaagtgttcctaatc
tatattggcaaagcacagggacagatggaaatgctcagccgacagtaaaa
tcacttaagcttgagttctgaatgtcaggcgaatgcatttgccactggca
tctaaagactgtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112222063_112223149
seq2: B6Ng01-066F15.b_42_1109

seq1  GAATTCCCCAGAAACTTGAGGGCCACCTTACCTGCAGTATTATTGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGAAACTTGAGGGCCACCTTACCTGCAGTATTATTGCAGCA  50

seq1  TGGTAAAAACAAGAGAGACTCTAACTCTAGGGCTTGGAGAGATGGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAACAAGAGAGACTCTAACTCTAGGGCTTGGAGAGATGGCTCAG  100

seq1  TGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAG  150

seq1  CACCCACATGGTGGCTCACAGCCATCTGTAATGGGATTCAGTGCCCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATGGTGGCTCACAGCCATCTGTAATGGGATTCAGTGCCCTCTA  200

seq1  ATGGTGTGTCTGAAGACAGCCACAGTGCACTCATATACATAACTTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGTCTGAAGACAGCCACAGTGCACTCATATACATAACTTAAATA  250

seq1  TTCTTTTGAAAAAAAAGAAGGACTCTTCAGCAAGGTAGACGTGAAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAAAAAAAAGAAGGACTCTTCAGCAAGGTAGACGTGAAAGCCA  300

seq1  ATTCCCTTAAAGTTGTCCTTTGACCTCTATTTGCACTCTGGCATGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTAAAGTTGTCCTTTGACCTCTATTTGCACTCTGGCATGTGCAT  350

seq1  GCACACACAATATTTAATAAATAATTTTAAATTATTTTTTTAAAAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAATATTTAATAAATAATTTTAAATTATTTTTTTAAAAGTTTA  400

seq1  AATACATCACTTATAAATACCCCAATAGAACAACTGTTAATGTTTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCACTTATAAATACCCCAATAGAACAACTGTTAATGTTTTGATG  450

seq1  TATGGCTTCTTTTGAAGCTTTTTAAAGGCTGATAGTACTTTTCTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTCTTTTGAAGCTTTTTAAAGGCTGATAGTACTTTTCTTTTTAT  500

seq1  AAAACTGGGATTATGGGCTAGAGAGACAGCTCAGAAGTTAAGAGCAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGGATTATGGGCTAGAGAGACAGCTCAGAAGTTAAGAGCAGTTG  550

seq1  CTGTTCTTGCAGAGAAACCAGGTTGAGTTTCCAACGCACACATCAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGCAGAGAAACCAGGTTGAGTTTCCAACGCACACATCAGATGG  600

seq1  CTTATAATGTACTGACTCCAGTTCCAAGGCCCCTGTTCTGGTCTCTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATGTACTGACTCCAGTTCCAAGGCCCCTGTTCTGGTCTCTGCAC  650

seq1  ATACATGTATGTGACACACATTCAGGAAAGCCCACACACATAAACTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTATGTGACACACATTCAGGAAAGCCCACACACATAAACTAATA  700

seq1  CAAATAAGTACATTAAAAATACATATCTTTTCATTGTTTAAACAAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTACATTAAAAATACATATCTTTTCATTGTTTAAACAAATACT  750

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTTTTG  800
      |||||||||||||||||||||||| |||||||||||||  ||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTGAGATTTTTTTG  800

seq1  AGACAGGGTTTCTCTGTGTAATCCTGGCTATCCTGGAACTCACTCTGTAA  850
      ||| |||||||||||||||||| ||| |||| ||||||||||||||||||
seq2  AGAAAGGGTTTCTCTGTGTAAT-CTGTCTATTCTGGAACTCACTCTGTAA  849

seq1  ACCAGGCTGGCCTCGAATTTAGAAATCCGCCTGTGGCTGCCTCCCAAGTG  900
      ||||||||||||  ||||||| |||||||||||||||||||  || ||||
seq2  ACCAGGCTGGCCCTGAATTTA-AAATCCGCCTGTGGCTGCCCTCCCAGTG  898

seq1  CTGGGATTAAAGGTGGGCGCCACCAC-TACCCGGCTAAACAAATACTCTT  949
      |||||| |||| |||||||||||||| |||||||||||   ||||||| |
seq2  CTGGGAATAAA-GTGGGCGCCACCACTTACCCGGCTAA--CAATACTCCT  945

seq1  TAGGGGACAGGAGAGATAGTTGATCAGTGAAGAGTTCTTGTTCTTGCAGA  999
      || |||||||||||||||||||||| ||||  ||||||| || ||||| |
seq2  TAAGGGACAGGAGAGATAGTTGATCTGTGA--AGTTCTT-TTTTTGCA-A  991

seq1  GAACCTGGGTTCAGTTCCCAGTACAAATGTGGTGGCTCACAGCCACCCAT  1049
      | || ||||||||||| ||||||| |||||||| ||||  ||||| ||||
seq2  G-ACTTGGGTTCAGTT-CCAGTAC-AATGTGGT-GCTCCAAGCCA-CCAT  1036

seq1  AATTCCAAGGTTAAGCAATCAGATGCCATCTTCTGACC  1087
       ||||||  ||| ||| ||| |||||||||||||||||
seq2  -ATTCCA--GTT-AGC-ATC-GATGCCATCTTCTGACC  1068

seq1: chr2_112355165_112356295
seq2: B6Ng01-066F15.g_69_1184 (reverse)

seq1  CAGCACAGCTCCTTTAGATGCCAGTGTGCAAATGCATTCTGCTCTGACTA  50
      ||||||||   ||||||||||||||| |||||||||||| || ||||| |
seq2  CAGCACAG--TCTTTAGATGCCAGTG-GCAAATGCATTC-GC-CTGAC-A  44

seq1  TTCAAGAACTCAAGCCTTAAGTGATTTTACTGGTCGGCTGAGCATTTCCA  100
      ||| |||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTC-AGAACTCAAG-CTTAAGTGATTTTACT-GTCGGCTGAGCATTTCCA  91

seq1  TCTTGTTCCCTGTGCTTTGGCCAATTATAGATTAGGAACACTTTTTATTC  150
      |||   |||||||||||| ||||| |||||||||||||||||||||||  
seq2  TCT--GTCCCTGTGCTTT-GCCAA-TATAGATTAGGAACACTTTTTAT--  135

seq1  AAGGTAGGAGGAAGGAAACAGGTAAAATGGCTAGTTAATTCTTACCAGCT  200
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGGTAGGAGGAAGGAAACAGGT-AAATGGCTAGTTAATTCTTACCAGCT  184

seq1  ATTTAGCT-AAAAGATCTTGGAGGAAAAATTGAAATAATGCGATTAAATT  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTAAAAAGATCTTGGAGGAAAAATTGAAATAATGCGATTAAATT  234

seq1  AGCTTCTATTCTACATGTGGGTTTAATTCGGTCGGAGATACTGCATGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTATTCTACATGTGGGTTTAATTCGGTCGGAGATACTGCATGCAT  284

seq1  GTTTGAATTCAATTAAAACTGTAGTCTAACCCAGAAGGAATGTTCATTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATTCAATTAAAACTGTAGTCTAACCCAGAAGGAATGTTCATTGG  334

seq1  TTTATGATTTTGGTTATTTTTTTTTTAACATTTTATTTATATAAGTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTTTGGTTATTTTTTTTTTAACATTTTATTTATATAAGTTAAA  384

seq1  GTCAGGCACATGGTGGAATCCTCTGTTATGTTTTGATAGTCTGCATACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCACATGGTGGAATCCTCTGTTATGTTTTGATAGTCTGCATACTG  434

seq1  ATTTCTTCTCAGAGGTTTGATTATCCGTCTTGAGAGACTTCAGTTGTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTCAGAGGTTTGATTATCCGTCTTGAGAGACTTCAGTTGTCAT  484

seq1  GTCTTTGCTGAGCTCTTCCGTTTCTTCTCCATTCTGCGGCTGATTTATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTGAGCTCTTCCGTTTCTTCTCCATTCTGCGGCTGATTTATTG  534

seq1  GCTTCTCACTGCAGCGGGCTACTGAGAAGAGCCGCCCTGCCTTTTCGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACTGCAGCGGGCTACTGAGAAGAGCCGCCCTGCCTTTTCGTGC  584

seq1  ATGTTGCAGAGCAGCTGTGATGGTCTTCTGCCGAGCTGTGTTTCATTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAGAGCAGCTGTGATGGTCTTCTGCCGAGCTGTGTTTCATTCCC  634

seq1  TGATCATTTGACAAGTATCCTCCAGATACACCGTCTCTGCTCCTTACAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTGACAAGTATCCTCCAGATACACCGTCTCTGCTCCTTACAGC  684

seq1  AGTTCTGAGTTTTAGCTCTGTTCTTCTTTATATAAATTAATACACTAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGTTTTAGCTCTGTTCTTCTTTATATAAATTAATACACTAAAT  734

seq1  TATGGCAATTGCTTGGGGATAGGAATCAGTGGGGAAGGGCTATTGCCGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAATTGCTTGGGGATAGGAATCAGTGGGGAAGGGCTATTGCCGTT  784

seq1  TTATAGAGTGGTCAGAGAAGTTCTTACTGAGAAGGTTTGTTTAAAGTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGTGGTCAGAGAAGTTCTTACTGAGAAGGTTTGTTTAAAGTCCT  834

seq1  GGGGACGATGAGGGAGGAAGCACTGTGGGTATACAGAAGAGTTTCCAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACGATGAGGGAGGAAGCACTGTGGGTATACAGAAGAGTTTCCAAGG  884

seq1  CAAAGACAGCAAGCTCAAAGGCTCTGAGGGAGCGGTGTTTACAACTGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGCAAGCTCAAAGGCTCTGAGGGAGCGGTGTTTACAACTGATC  934

seq1  TCCAGGTGAGTTTTCCAGGCACAGCAGTTAACTTTCGAGAACTGGTAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGAGTTTTCCAGGCACAGCAGTTAACTTTCGAGAACTGGTAATT  984

seq1  AAGGAGTGAGTTTCTATCTTACCCACTTGGTGTTTGCTAATGTCGAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGAGTTTCTATCTTACCCACTTGGTGTTTGCTAATGTCGAAACA  1034

seq1  GTCACTCTGGACAGTTGATTGCTCTTTTGCAGTGAAGTTAAGGAACCAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTGGACAGTTGATTGCTCTTTTGCAGTGAAGTTAAGGAACCAGC  1084

seq1  ACTTGTACCTTTGATGAATTGCTAGAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  ACTTGTACCTTTGATGAATTGCTAGAGAATTC  1116