BAC Information

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BAC

Clone NameB6Ng01-066G06
Chromosome2 (Build37)
Map Location 90,608,259 - 90,787,697
singlet/doubletdoublet
Overlap geneFnbp4, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1
Upstream geneOlfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Rpl30-ps3
Downstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066G06.bB6Ng01-066G06.g
ACCDH885583DH885584
length4651,062
definitionDH885583|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G06, 5' end.DH885584|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,787,227 - 90,787,697)(90,608,259 - 90,609,323)
sequence
ctgtcctgatttccaatgatgaactacaatgtggaactggaagtcaaaaa
accctttcctccccaagttgctttaggtagtatttctacactaaaacagt
aacaccaagacatatattgtataaaattctcaaaaaatgaaaacatttag
aaaaacagtacagtactataacagaggaaattaccaacactgctcaagtt
ataagttaattctggtattaagttcagagttattatctttacgggtgtgt
gtgtgttttgcctctacatacacaggtgcaccacatgtgctgacccacaa
aggccaagagtgtcagataccttggaactggagttacagacagttgtgag
ctaacacatgggtactgcaaactgaaactgggttcactggaagaacagca
agtgctcttaacccaagcttctctcctactacagttatctttaaagatgg
gggtgggggtggggg
gaattccacggtccaagaggggaagagtcacctttcacttcgatgttctc
ttctttggaagggaaattagtgttctaggcaactgagtcccttcattaat
gacacttgaaacccggttttacattggcaaaaaaaaaagaccaaacaaac
aaaacaaatgatttctaagtcatctgttggagagggctaagggctgtatt
cacagagctgctggcagtgcaaatagctttgagttatcctgggttctcca
tccacaattgtcaaagctctttgtggcctttgtgaatagcagtccataag
aagaggttcgtccctgtgagagcagactgcttgctgtcctgggacaggac
ccagtggaagtgtctctgtaggagaacagattttaaaacatgggttttct
ttcttgtgatttagggatcatagacgatatttctatgtaaacgaacagtc
gggcgagtctcaatgggaattcccagatggtgaggaggaggaagaaagcc
aaacaaaggaagttagagatgagagtctgcctaagctgaccgtgaaggac
aaaacctgcactgatccaaactctacagaatcctctgagaacccgacagg
taagacagtttattctgttctagtagaacaatagctttagagaaaagaac
atcagtttttttattataggacaacttatagcataggaataacatgctaa
ttgaagtccaacttaaactgtgacaacacacgagtttgctaaaaggaatt
aagtcaatgtatcagtctgccatcaaagtaaaaaaataaaatgctacctt
ttgatcttaaaatatttcatgcactgaatattaattaatacatgttttgt
gtactctgttagtaagtacaattttatgtatcaaacaaaaataattcata
gggctggagagatgctcagttggtttagagcactggatgctctctcacag
gtcctgagttcagttccaacagccacatggtggctcacaccattcggtat
aagaatccgaatgccctcctctcaggtgacctctaaaaattttaaatggg
aaaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90787227_90787697
seq2: B6Ng01-066G06.b_45_515 (reverse)

seq1  CCCCCACCCCCACCCCCATCTTTAAAGATAACTGTAGTAGGAGAGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCACCCCCATCTTTAAAGATAACTGTAGTAGGAGAGAAGCT  50

seq1  TGGGTTAAGAGCACTTGCTGTTCTTCCAGTGAACCCAGTTTCAGTTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAGAGCACTTGCTGTTCTTCCAGTGAACCCAGTTTCAGTTTGCA  100

seq1  GTACCCATGTGTTAGCTCACAACTGTCTGTAACTCCAGTTCCAAGGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCATGTGTTAGCTCACAACTGTCTGTAACTCCAGTTCCAAGGTATC  150

seq1  TGACACTCTTGGCCTTTGTGGGTCAGCACATGTGGTGCACCTGTGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCTTGGCCTTTGTGGGTCAGCACATGTGGTGCACCTGTGTATGT  200

seq1  AGAGGCAAAACACACACACACCCGTAAAGATAATAACTCTGAACTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAAACACACACACACCCGTAAAGATAATAACTCTGAACTTAATA  250

seq1  CCAGAATTAACTTATAACTTGAGCAGTGTTGGTAATTTCCTCTGTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTAACTTATAACTTGAGCAGTGTTGGTAATTTCCTCTGTTATAG  300

seq1  TACTGTACTGTTTTTCTAAATGTTTTCATTTTTTGAGAATTTTATACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACTGTTTTTCTAAATGTTTTCATTTTTTGAGAATTTTATACAAT  350

seq1  ATATGTCTTGGTGTTACTGTTTTAGTGTAGAAATACTACCTAAAGCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTGGTGTTACTGTTTTAGTGTAGAAATACTACCTAAAGCAACT  400

seq1  TGGGGAGGAAAGGGTTTTTTGACTTCCAGTTCCACATTGTAGTTCATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAAAGGGTTTTTTGACTTCCAGTTCCACATTGTAGTTCATCAT  450

seq1  TGGAAATCAGGACAGGAATTC  471
      |||||||||||||||||||||
seq2  TGGAAATCAGGACAGGAATTC  471

seq1: chr2_90608259_90609323
seq2: B6Ng01-066G06.g_68_1129

seq1  GAATTCCACGGTCCAAGAGGGGAAGAGTCACCTTTCACTTCGATGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGTCCAAGAGGGGAAGAGTCACCTTTCACTTCGATGTTCTC  50

seq1  TTCTTTGGAAGGGAAATTAGTGTTCTAGGCAACTGAGTCCCTTCATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAAGGGAAATTAGTGTTCTAGGCAACTGAGTCCCTTCATTAAT  100

seq1  GACACTTGAAACCCGGTTTTACATTGGCAAAAAAAAAAGACCAAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGAAACCCGGTTTTACATTGGCAAAAAAAAAAGACCAAACAAAC  150

seq1  AAAACAAATGATTTCTAAGTCATCTGTTGGAGAGGGCTAAGGGCTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATGATTTCTAAGTCATCTGTTGGAGAGGGCTAAGGGCTGTATT  200

seq1  CACAGAGCTGCTGGCAGTGCAAATAGCTTTGAGTTATCCTGGGTTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTGCTGGCAGTGCAAATAGCTTTGAGTTATCCTGGGTTCTCCA  250

seq1  TCCACAATTGTCAAAGCTCTTTGTGGCCTTTGTGAATAGCAGTCCATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATTGTCAAAGCTCTTTGTGGCCTTTGTGAATAGCAGTCCATAAG  300

seq1  AAGAGGTTCGTCCCTGTGAGAGCAGACTGCTTGCTGTCCTGGGACAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTCGTCCCTGTGAGAGCAGACTGCTTGCTGTCCTGGGACAGGAC  350

seq1  CCAGTGGAAGTGTCTCTGTAGGAGAACAGATTTTAAAACATGGGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAAGTGTCTCTGTAGGAGAACAGATTTTAAAACATGGGTTTTCT  400

seq1  TTCTTGTGATTTAGGGATCATAGACGATATTTCTATGTAAACGAACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGATTTAGGGATCATAGACGATATTTCTATGTAAACGAACAGTC  450

seq1  GGGCGAGTCTCAATGGGAATTCCCAGATGGTGAGGAGGAGGAAGAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGTCTCAATGGGAATTCCCAGATGGTGAGGAGGAGGAAGAAAGCC  500

seq1  AAACAAAGGAAGTTAGAGATGAGAGTCTGCCTAAGCTGACCGTGAAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGAAGTTAGAGATGAGAGTCTGCCTAAGCTGACCGTGAAGGAC  550

seq1  AAAACCTGCACTGATCCAAACTCTACAGAATCCTCTGAGAACCCGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCACTGATCCAAACTCTACAGAATCCTCTGAGAACCCGACAGG  600

seq1  TAAGACAGTTTATTCTGTTCTAGTAGAACAATAGCTTTAGAGAAAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGTTTATTCTGTTCTAGTAGAACAATAGCTTTAGAGAAAAGAAC  650

seq1  ATCAGTTTTTTTATTATAGGACAACTTATAGCATAGGAATAACATGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTTTTTATTATAGGACAACTTATAGCATAGGAATAACATGCTAA  700

seq1  TTGAAGTCCAACTTAAACTGTGACAACACACGAGTTTGCTAAAAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCCAACTTAAACTGTGACAACACACGAGTTTGCTAAAAGGAATT  750

seq1  AAGTCAATGTATCAGTCTGCCATCAAAGTAAAAAAATAAAATGCTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGTATCAGTCTGCCATCAAAGTAAAAAAATAAAATGCTACCTT  800

seq1  TTGATCTTAAAATATTTCATGCACTGAATATTAATTAATACATGTTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTAAAATATTTCATGCACTGAATATTAATTAATACATGTTTTGT  850

seq1  GTACTCTGTTAGTAAGTACAAATTTTATGTATCAAACAAAAATAATTCAT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTACTCTGTTAGTAAGTAC-AATTTTATGTATCAAACAAAAATAATTCAT  899

seq1  AGGGCTGGAGAGATGGCTCAG-TGGTTAAGAGCACTGGATGCTCTCTCAC  949
      |||||||||||||| |||||| ||||| ||||||||||||||||||||||
seq2  AGGGCTGGAGAGAT-GCTCAGTTGGTTTAGAGCACTGGATGCTCTCTCAC  948

seq1  AGGTCCTGAGTTCAGTTCCCAACAGCCACATGGTGGCTCACAACCATCGG  999
      ||||||||||||||||| |||||||||||||||||||||||| |  ||||
seq2  AGGTCCTGAGTTCAGTT-CCAACAGCCACATGGTGGCTCACACCATTCGG  997

seq1  TAATAGAATCCG-ATGCCCTCCTCTCATGTGAACTCATAAAAAATTTTAA  1048
      ||  |||||||| |||||||||||||| |||| |||   |||||||||||
seq2  TATAAGAATCCGAATGCCCTCCTCTCAGGTGACCTC--TAAAAATTTTAA  1045

seq1  AATGGAAAAAAAAAAAA  1065
      |  ||||||||||||||
seq2  ATGGGAAAAAAAAAAAA  1062