BAC Information

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BAC

Clone NameB6Ng01-066H03
Chromosome7 (Build37)2 (Build37)
Map Location 67,984,592 - 67,985,834139,865,601 - 139,865,990
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC664788, Snrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
Downstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066H03.bB6Ng01-066H03.g
ACCDH885625DH885626
length1,224874
definitionDH885625|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H03, 5' end.DH885626|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,984,592 - 67,985,834)(139,865,601 - 139,865,990)
sequence
gaattcaacagagcagaaagagaaagacgtaaaaaaaaaatcagatacaa
tagaataattatgcacgccaaggccatctgaaaagcagtcatgcacaaat
gaaatctataaacccactgtccagggctaaggttagtagacatgggaaca
actgttattacaaagagctgccattgactactgaaatatcttcatccagg
cctactgcaggcagtcccttatttcagatggtagattccctggagggatg
tgtctcctgcttctcaaagtaccagactcttgctatccttttctacaagg
agctgccacggacttctgggatgtctccatcctggcctactataggcagt
ccctgttattgtatgctgtcacagtcagggtcaatagctcatttgaattt
ttgtctcttaccatttatcataaaaaatgctagaatgacttttcccaaga
aattactcttctcagtatagcattaagacaaaggctaatataggcgaaac
ttaggagactgaattgataaataagtcttattaagtccattcattaactc
tttctacctttcttgactattttattaaatagggaatatggacaccagag
cacttagaagacacagtggttttagaaatgaatgcaaggccattatctga
ttctatagacctaggaaatctaaatctctataaggtattaatgaagtggg
aacaaaccacttatgcagtctagattgtaataggaaatgtttctatcaat
cttaatagtaacaagatattagtatgctattgtttttggttaggagacag
gaatctcagaccaagttataccacttctggaaaaatagtcaaaagatgat
acactatactagagggagacttctcacctatgttcatagcacccttgtac
ataatagccagaaactgtaaacaacctttatgttcctcactgaggatgga
taagaaatgtggtacatgtacataatgaatcctatcagctattaaaaaaa
tcatgaattttgcaggaaatggatagaactgagtgatatatctgaggcat
agtatatactcctttgtgagtggaatagctataaatgcaggcaaaatagg
aatcccagaccagactctggtaatgaggcaagcagggtgcaattccactt
actaggtattacaggtggatgggaacgactggtaaaggaggtaggggcag
catgtacgttggaagaggaggtga
gaattctatccaaagatgattcccattagaccttttgtgtttacattcct
ctgttttatgtaagattccagttacctcaattgtaccttgcgaatatgtc
acccaactttcttattgtcctctacataaaaagtctgatgctcaattcga
aaattacactcagattccacacgacctctcctgtgtgtgtctgtttgtca
ttcatccacactttgcccaccccacatcaagagacccgttccacgcagac
acagggacccaaagggtctgcgacactttctttctttctaattaggtact
ttcttcattcacatctccagtgctatccctaaagccccccacaccctccc
cccagcccccctctcccccagtcccccacccacccactcccacttcctgg
ccctggttttcccctgtactgaggcatataaagtctgcatgaccaatggg
cctctctttccagtgatggccgactaggccatcttttgatatatatgtag
ctagagtcaagagctccgggatattggttagttcatattgttgttccacc
tatagggttgcagatcccctcagctccttgggtactttctctagctcctc
cattgggggccctgtgatccatccaatagctgactgtgagcatccacttc
tgtgtttgccaggccccagcatagtctcacaagagacagctttaatcttt
ttaaacacagttttttcttcttcctttccaggataaaactgcacatcaga
cttaccatttacatcattttttactgtgtacttctaaaaattttttgccc
tagcccatcatccatttaactattctagatcctgaagtcatttaaggtta
ttatttttaatctggaaggctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_67984592_67985834
seq2: B6Ng01-066H03.b_48_1271

seq1  GAATTCAACAGAGCAGAAAGAGAAAGACGTAAAAAAAAAATCAGATACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAGCAGAAAGAGAAAGACGTAAAAAAAAAATCAGATACAA  50

seq1  TAGAATAATTATGCACGCCAAGGCCATCTGAAAAGCAGTCATGCACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAATTATGCACGCCAAGGCCATCTGAAAAGCAGTCATGCACAAAT  100

seq1  GAAATCTATAAACCCACTGTCCAGGGCTAAGGTTAGTAGACATGGGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTATAAACCCACTGTCCAGGGCTAAGGTTAGTAGACATGGGAACA  150

seq1  ACTGTTATTACAAAGAGCTGCCATTGACTACTGAAATATCTTCATCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTACAAAGAGCTGCCATTGACTACTGAAATATCTTCATCCAGG  200

seq1  CCTACTGCAGGCAGTCCCTTATTTCAGATGGTAGATTCCCTGGAGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCAGGCAGTCCCTTATTTCAGATGGTAGATTCCCTGGAGGGATG  250

seq1  TGTCTCCTGCTTCTCAAAGTACCAGACTCTTGCTATCCTTTTCTACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGCTTCTCAAAGTACCAGACTCTTGCTATCCTTTTCTACAAGG  300

seq1  AGCTGCCACGGACTTCTGGGATGTCTCCATCCTGGCCTACTATAGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCACGGACTTCTGGGATGTCTCCATCCTGGCCTACTATAGGCAGT  350

seq1  CCCTGTTATTGTATGCTGTCACAGTCAGGGTCAATAGCTCATTTGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATTGTATGCTGTCACAGTCAGGGTCAATAGCTCATTTGAATTT  400

seq1  TTGTCTCTTACCATTTATCATAAAAAATGCTAGAATGACTTTTCCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTACCATTTATCATAAAAAATGCTAGAATGACTTTTCCCAAGA  450

seq1  AATTACTCTTCTCAGTATAGCATTAAGACAAAGGCTAATATAGGCGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCTTCTCAGTATAGCATTAAGACAAAGGCTAATATAGGCGAAAC  500

seq1  TTAGGAGACTGAATTGATAAATAAGTCTTATTAAGTCCATTCATTAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGACTGAATTGATAAATAAGTCTTATTAAGTCCATTCATTAACTC  550

seq1  TTTCTACCTTTCTTGACTATTTTATTAAATAGGGAATATGGACACCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTTTCTTGACTATTTTATTAAATAGGGAATATGGACACCAGAG  600

seq1  CACTTAGAAGACACAGTGGTTTTAGAAATGAATGCAAGGCCATTATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAAGACACAGTGGTTTTAGAAATGAATGCAAGGCCATTATCTGA  650

seq1  TTCTATAGACCTAGGAAATCTAAATCTCTATAAGGTATTAATGAAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGACCTAGGAAATCTAAATCTCTATAAGGTATTAATGAAGTGGG  700

seq1  AACAAACCACTTATGCAGTCTAGATTGTAATAGGAAATGTTTCTATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCACTTATGCAGTCTAGATTGTAATAGGAAATGTTTCTATCAAT  750

seq1  CTTAATAGTAACAAGATATTAGTATGCTATTGTTTTTGGTTAGGAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGTAACAAGATATTAGTATGCTATTGTTTTTGGTTAGGAGACAG  800

seq1  GAATCTCAGACCAAGTTATACCACTTCTGGAAAAATAGTCAAAAGATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAGACCAAGTTATACCACTTCTGGAAAAATAGTCAAAAGATGAT  850

seq1  ACACTATACTAGAGGGAGACTTCTCACCTATGTTCATAGCACCCTTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATACTAGAGGGAGACTTCTCACCTATGTTCATAGCACCCTTGTAC  900

seq1  ATAATAGCCAGAAACTGTAAACAACCTTTATGTTCCTCAACTGAAGAATG  950
      |||||||||||||||||||||||||||||||||||||| |||| || |||
seq2  ATAATAGCCAGAAACTGTAAACAACCTTTATGTTCCTC-ACTG-AGGATG  948

seq1  GATAAAGAAAATGTGGTACATGTACATAATGAATCCTATTCAGCTATTAA  1000
      |||||   |||||||||||||||||||||||||||||| ||||||||| |
seq2  GATAA--GAAATGTGGTACATGTACATAATGAATCCTA-TCAGCTATT-A  994

seq1  AAAAAATCATGAATTTTGCAGGGAAATGGATAGAACTGAGTGAATAATAT  1050
      |||||||||||||||||||| |||||||||||||||||||||    ||||
seq2  AAAAAATCATGAATTTTGCA-GGAAATGGATAGAACTGAGTG----ATAT  1039

seq1  -TCTGAGGCAATAGTATATACTCTTTTGTGAGTGGACATTAGCTATAAAA  1099
       |||||||| ||||||||||||| |||||||||||  | ||||||| |||
seq2  ATCTGAGGC-ATAGTATATACTCCTTTGTGAGTGG--AATAGCTAT-AAA  1085

seq1  TGCAGGGCAAATATAGTATATTCCACAGACCCAAAGACTCTGGGTAATAT  1149
      |||| |||||| |||| | ||  | ||||||   ||||||| ||||||  
seq2  TGCA-GGCAAA-ATAGGA-AT--CCCAGACC---AGACTCT-GGTAAT--  1124

seq1  GGAAGGCCAAAAGGCAGGGTGCACAAATCTCACTTATAACTAGGTAGTTA  1199
         ||||    | |||||||||   |||  |||||   ||||||    ||
seq2  --GAGGC----AAGCAGGGTGC---AATTCCACTT---ACTAGG----TA  1158

seq1  TCAGAGGTGGAT-GGAGAGAC-------GGAACTGGG-------------  1228
      | | |||||||| |||  |||       |||  | ||             
seq2  TTACAGGTGGATGGGAACGACTGGTAAAGGAGGTAGGGGCAGCATGTACG  1208

seq1  -TAAAAGAGGAGGTGA  1243
       |  ||||||||||||
seq2  TTGGAAGAGGAGGTGA  1224

seq1: chr2_139865601_139865990
seq2: B6Ng01-066H03.g_354_757 (reverse)

seq1  ATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTGGCAAACACAGAAGTGG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCTCTTGTGAGACTATGCTGGGGCCTGGCAAACACAGAAGTGG  50

seq1  ATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGC  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGC  100

seq1  TAGAGAAAGTACCCAAGGAGCTGAGGGGATCTGCAACCCTATAGGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTACCCAAGGAGCTGAGGGGATCTGCAACCCTATAGGTGGAA  150

seq1  CAACAATATGAACTAACCAGTGCCCCCAGAGCTCGTGTCTCTAGCTGCAT  200
      ||||||||||||||||||| |   ||| |||||| || |||||||| |||
seq2  CAACAATATGAACTAACCAAT-ATCCCGGAGCTCTTGACTCTAGCTACAT  199

seq1  ATGTATCAGAGGATGGCCTAGTCGGCCACCAGTGGAAAGAGAGGCCCATT  250
      || ||||| | ||||||||||||||||| || ||||||||||||||||||
seq2  ATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  249

seq1  GGTCGTGCAGACTTTATATGCCTCAGTGCAAGGGAACGCAAAGGCCAGGA  300
      |||| |||||||||||||||||||||| || |||||  | | ||||||||
seq2  GGTCATGCAGACTTTATATGCCTCAGTACAGGGGAAAACCAGGGCCAGGA  299

seq1  AGTGGGAGT---------------TGGGGG-GAGGGCGGCTGGGGGAGAG  334
      |||||||||               |||||| ||||| ||||||||| |||
seq2  AGTGGGAGTGGGTGGGTGGGGGACTGGGGGAGAGGGGGGCTGGGGG-GAG  348

seq1  GGTGTGGGGGGCTTTTGGGATAGCACTGGAGATGTGAATGAAGAAAGTAC  384
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGGGCTTTAGGGATAGCACTGGAGATGTGAATGAAGAAAGTAC  398

seq1  CTAATT  390
      ||||||
seq2  CTAATT  404