BAC Information

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BAC

Clone NameB6Ng01-066K13
Chromosome2 (Build37)
Map Location 29,463,415 - 29,570,175
singlet/doubletdoublet
Overlap geneRapgef1
Upstream geneGfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8
Downstream geneLOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066K13.bB6Ng01-066K13.g
ACCDH885777DH885778
length1,0471,070
definitionDH885777|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K13, 5' end.DH885778|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,569,114 - 29,570,175)(29,463,415 - 29,464,504)
sequence
gaattctagtgggctgtgtgtgtggctatttctgaagcagagtttgtgaa
ggcccaaaggcaaggaacactgacttctggccccttgtcgtctccagcat
ggtgaagcagccttgtcctgcccctgccttccctcagctggaaatgtata
tactggggctctctgcagggggagaagcatgggaggtgctgctgtacagg
gtccagtctgtctgtgcgctcaagctgagcaggcctgcagcagcctgggc
tttccataagcatacggtgagttatcatggtttatttcaagggctgtctg
gagcggcagaagaccatgtgggtgttgtcctggtgctgcagggatggaac
atttcaccacagaagtagggcattggtggagcaaagcagagcatgacaga
ggcagcagagggagaactgtcccagctccaggtgaaagactttgctgcag
tgcaaggactcgggggctgtgtagatgatgaacgtggggtacacaggatg
tttgtggagccacacacagaccagaagagaacaaacagtaaggccagtca
ggagaggacattcactcaccacctgctacacactggcttagaactcaggg
tctgcataaaagtagctaggaagccaggcgctggtggtgcacgactttaa
tcccagcactcaggaggcagaggcaggtggatttctgagttcgaggccag
cctggtctacaaagtgagttccaggacagtcagggctacacagagaaacc
ctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaagtagctagggacctgg
gacatgtgctggcaaagtccaggcaggagacagcggtctataaagtggct
tttcacagaacaggtacttcctcccccataagggaaaccctcctgatgct
acaatgcaggaatcttcatggaaaccaggattcaggcaagcccaggaaac
aaggatgggccctgagcaacaactctctggcctggcctacagggtttacc
cccccacacaccccatatccttctctctgtgtgggattggctttgct
gaattctccttttagttaggttaatgaagaagggacatctgtgttccttg
tctacactaactctttcgtaaatggtataaaatttgtgcaagactcttcc
tgggaaccacctgagaacccagaactgcaccccctcacacccggcagggc
ttcgtgcctttcctaatgtagagtgtggagtagtggacgacaaagccaag
agcatcaggaaggaccattctaaagacaagatggtaactcctaactcccg
ttcaagctgtcactttttcactccaagagcttctcttcgttgaggctagc
ctgtggtctcagcaggggagtcggggtagagcagaagcaagcttgcaagc
cccaggccaatcaggagtgtctcaaaacacaagcaaaaaccacagctggg
aacagtcaaagatgcagaagttagtaacagtagcttctcctaagagtggg
aaatgtactttctatggtcttttgtgatttcatcccagtgttttagacag
ggtatcactgtgtaagccacgatagcctacaattcacagtgttcctgcct
tggcagtcattagaagtccaatgcttttattttaaggtattagagactgg
agtgtagctgtataataatgataacaccaccagaagcaccacagagacat
gcctggtgccaagggtaacaactgtgcagagccagtgtgtagctcacatc
tgtctgctttctagtagggatcctggagctgccttgggcaactataagag
ccggttaccactgagtttcactgccacctgaactgcatcgctcagccagg
tctccatgccatcgtagatgagatgtaccatgtggagtggactccacatt
ctatgacactgcctttcctgttggcttcttattgccctgcccacttcctc
ctctcacctgttttaaactgctggccgtgaatcttttctttcttttttta
atgtttttggatccattttgattatattttttctggatatttcataatac
attcaatgtttcccttccaggtctccccttcagaaacctcctatccattc
ccccctcccctgccctatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29569114_29570175
seq2: B6Ng01-066K13.b_41_1087 (reverse)

seq1  AGCAAAGCCAGATCACACACAGGAGAGGAAGGGATGTGGGGTGTGGTGGG  50
      |||||||||| ||| |||||| |||||  | |||| |||||||| |||||
seq2  AGCAAAGCCA-ATCCCACACA-GAGAG--AAGGATATGGGGTGT-GTGGG  45

seq1  GGGGTAAAGCCCTGTAGGCCAGGGCCAGAGAGGTGTTGCTCAGGGCCACT  100
      |||||||| |||||||||||| |||||||||| |||||||||||||| | 
seq2  GGGGTAAA-CCCTGTAGGCCA-GGCCAGAGAGTTGTTGCTCAGGGCC-CA  92

seq1  TCCTTGTTTCCTGGGCTTGCCTGAATTCCTGGGTTTCCATGAAAGATTCC  150
      ||||||||||||||||||||||||| |||| |||||||||| |||||| |
seq2  TCCTTGTTTCCTGGGCTTGCCTGAA-TCCT-GGTTTCCATG-AAGATT-C  138

seq1  CTGCATTGTTAGCATCAGGAGGGTTTCCCTTATGGGGGAGGAAGTACCTG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTG-TAGCATCAGGAGGGTTTCCCTTATGGGGGAGGAAGTACCTG  187

seq1  TTCTGTGAAAAGCCACTTTATAGACCGCTGTCTCCTGCCTGGACTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAAAGCCACTTTATAGACCGCTGTCTCCTGCCTGGACTTTGCC  237

seq1  AGCACATGTCCCAGGTCCCTAGCTACTTTTTTTTTTTTTTTTTTTTTGGT  300
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  AGCACATGTCCCAGGTCCCTAGCTAC--TTTTTTTTTTTTTTTTTTTGGT  285

seq1  TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACT  335

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  385

seq1  TGAGTGCTGGGATTAAAGTCGTGCACCACCAGCGCCTGGCTTCCTAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGGATTAAAGTCGTGCACCACCAGCGCCTGGCTTCCTAGCTA  435

seq1  CTTTTATGCAGACCCTGAGTTCTAAGCCAGTGTGTAGCAGGTGGTGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGCAGACCCTGAGTTCTAAGCCAGTGTGTAGCAGGTGGTGAGTG  485

seq1  AATGTCCTCTCCTGACTGGCCTTACTGTTTGTTCTCTTCTGGTCTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTCTCCTGACTGGCCTTACTGTTTGTTCTCTTCTGGTCTGTGTG  535

seq1  TGGCTCCACAAACATCCTGTGTACCCCACGTTCATCATCTACACAGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCACAAACATCCTGTGTACCCCACGTTCATCATCTACACAGCCCC  585

seq1  CGAGTCCTTGCACTGCAGCAAAGTCTTTCACCTGGAGCTGGGACAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCTTGCACTGCAGCAAAGTCTTTCACCTGGAGCTGGGACAGTTCT  635

seq1  CCCTCTGCTGCCTCTGTCATGCTCTGCTTTGCTCCACCAATGCCCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTGCCTCTGTCATGCTCTGCTTTGCTCCACCAATGCCCTACTT  685

seq1  CTGTGGTGAAATGTTCCATCCCTGCAGCACCAGGACAACACCCACATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGAAATGTTCCATCCCTGCAGCACCAGGACAACACCCACATGGT  735

seq1  CTTCTGCCGCTCCAGACAGCCCTTGAAATAAACCATGATAACTCACCGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCGCTCCAGACAGCCCTTGAAATAAACCATGATAACTCACCGTA  785

seq1  TGCTTATGGAAAGCCCAGGCTGCTGCAGGCCTGCTCAGCTTGAGCGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGGAAAGCCCAGGCTGCTGCAGGCCTGCTCAGCTTGAGCGCACA  835

seq1  GACAGACTGGACCCTGTACAGCAGCACCTCCCATGCTTCTCCCCCTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTGGACCCTGTACAGCAGCACCTCCCATGCTTCTCCCCCTGCAG  885

seq1  AGAGCCCCAGTATATACATTTCCAGCTGAGGGAAGGCAGGGGCAGGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCAGTATATACATTTCCAGCTGAGGGAAGGCAGGGGCAGGACAA  935

seq1  GGCTGCTTCACCATGCTGGAGACGACAAGGGGCCAGAAGTCAGTGTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTCACCATGCTGGAGACGACAAGGGGCCAGAAGTCAGTGTTCCT  985

seq1  TGCCTTTGGGCCTTCACAAACTCTGCTTCAGAAATAGCCACACACACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGGCCTTCACAAACTCTGCTTCAGAAATAGCCACACACACAGC  1035

seq1  CCACTAGAATTC  1062
      ||||||||||||
seq2  CCACTAGAATTC  1047

seq1: chr2_29463415_29464504
seq2: B6Ng01-066K13.g_67_1136

seq1  GAATTCTCCTTTTAGTTAGGTTAATGAAGAAGGGACATCTGTGTTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTAGTTAGGTTAATGAAGAAGGGACATCTGTGTTCCTTG  50

seq1  TCTACACTAACTCTTTCGTAAATGGTATAAAATTTGTGCAAGACTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTAACTCTTTCGTAAATGGTATAAAATTTGTGCAAGACTCTTCC  100

seq1  TGGGAACCACCTGAGAACCCAGAACTGCACCCCCTCACACCCGGCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCACCTGAGAACCCAGAACTGCACCCCCTCACACCCGGCAGGGC  150

seq1  TTCGTGCCTTTCCTAATGTAGAGTGTGGAGTAGTGGACGACAAAGCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCCTTTCCTAATGTAGAGTGTGGAGTAGTGGACGACAAAGCCAAG  200

seq1  AGCATCAGGAAGGACCATTCTAAAGACAAGATGGTAACTCCTAACTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGAAGGACCATTCTAAAGACAAGATGGTAACTCCTAACTCCCG  250

seq1  TTCAAGCTGTCACTTTTTCACTCCAAGAGCTTCTCTTCGTTGAGGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTGTCACTTTTTCACTCCAAGAGCTTCTCTTCGTTGAGGCTAGC  300

seq1  CTGTGGTCTCAGCAGGGGAGTCGGGGTAGAGCAGAAGCAAGCTTGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTCAGCAGGGGAGTCGGGGTAGAGCAGAAGCAAGCTTGCAAGC  350

seq1  CCCAGGCCAATCAGGAGTGTCTCAAAACACAAGCAAAAACCACAGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCAATCAGGAGTGTCTCAAAACACAAGCAAAAACCACAGCTGGG  400

seq1  AACAGTCAAAGATGCAGAAGTTAGTAACAGTAGCTTCTCCTAAGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAAAGATGCAGAAGTTAGTAACAGTAGCTTCTCCTAAGAGTGGG  450

seq1  AAATGTACTTTCTATGGTCTTTTGTGATTTCATCCCAGTGTTTTAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTTTCTATGGTCTTTTGTGATTTCATCCCAGTGTTTTAGACAG  500

seq1  GGTATCACTGTGTAAGCCACGATAGCCTACAATTCACAGTGTTCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACTGTGTAAGCCACGATAGCCTACAATTCACAGTGTTCCTGCCT  550

seq1  TGGCAGTCATTAGAAGTCCAATGCTTTTATTTTAAGGTATTAGAGACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCATTAGAAGTCCAATGCTTTTATTTTAAGGTATTAGAGACTGG  600

seq1  AGTGTAGCTGTATAATAATGATAACACCACCAGAAGCACCACAGAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCTGTATAATAATGATAACACCACCAGAAGCACCACAGAGACAT  650

seq1  GCCTGGTGCCAAGGGTAACAACTGTGCAGAGCCAGTGTGTAGCTCACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGCCAAGGGTAACAACTGTGCAGAGCCAGTGTGTAGCTCACATC  700

seq1  TGTCTGCTTTCTAGTAGGGATCCTGGAGCTGCCTTGGGCAACTATAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTTCTAGTAGGGATCCTGGAGCTGCCTTGGGCAACTATAAGAG  750

seq1  CCGGTTACCACTGAGTTTCACTGCCACCTGAACTGCATCGCTCAGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTACCACTGAGTTTCACTGCCACCTGAACTGCATCGCTCAGCCAGG  800

seq1  TCTCCATGCCATCGTAGATGAGATGTACCATGTGGAGTGGACTCCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCCATCGTAGATGAGATGTACCATGTGGAGTGGACTCCACATT  850

seq1  CTATGACACTGCCTTTCCTGTTGGCTTCTTATTGCCCTGCCCACTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACACTGCCTTTCCTGTTGGCTTCTTATTGCCCTGCCCACTTCCTC  900

seq1  CTCTCACCCTGTTTTTAAACTGCTGGCCGTGAATCTTTTTCTTTTCTTTT  950
      |||||| |||| ||||||||||||||||||||||| ||||||    || |
seq2  CTCTCA-CCTG-TTTTAAACTGCTGGCCGTGAATC-TTTTCT----TTCT  943

seq1  TTTTTTTATGTTTTTTGATCCATTTTGAATTATTATTTTTTCTTGGATAT  1000
      |||||| |||||||| ||||||||||| |||| ||||||||| |||||| 
seq2  TTTTTTAATGTTTTTGGATCCATTTTG-ATTA-TATTTTTTC-TGGATA-  989

seq1  TTTCATTATTTACATTTCAAATGTTTTCCCTTTTCCAGGTCTCCCCTTCA  1050
      |||||| |  ||||||   ||||||| ||   ||||||||||||||||||
seq2  TTTCATAA--TACATT--CAATGTTTCCC---TTCCAGGTCTCCCCTTCA  1032

seq1  GAAACTCCCTATCCCATCCCCCCTCCCCCTGCCTCTATGA  1090
      |||||  |||||||  |||||||| |||||||| ||||||
seq2  GAAACCTCCTATCCATTCCCCCCT-CCCCTGCC-CTATGA  1070