BAC Information

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BAC

Clone NameB6Ng01-066O16
Chromosome2 (Build37)
Map Location 49,509,852 - 49,629,484
singlet/doubletdoublet
Overlap geneKif5c
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066O16.bB6Ng01-066O16.g
ACCDH885959DH885960
length1,1551,107
definitionDH885959|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O16, 5' end.DH885960|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,628,306 - 49,629,484)(49,509,852 - 49,510,969)
sequence
gaattcttcaccatgtgattctccgtcttttaaaaggctaacacctctga
ctgttttacctgatgcccactaaagcaaactgctcagcatttgaagagat
gagacctacattcaggattctctaaggactgatcaaatgcagtcggcatt
ataagccccaaccataaccactatcttcaataacattctaatcatcaccc
caacggctggcaggcagaggttatttgtctaaaccatctggctgcactcc
tacggcatctcagagtaaactttcaagaagtaggcatgagatagtaaatt
attcagagaacatacactggcatacattccagcaatgtgaaacatgtgac
gaaatggagccatccacttggctgttcagaagtgggatttttacagctag
aatatagaatgtaacagcctgtcaaacaatgaaaactttataaacatggc
cttttaaaaaagcggcccgagagcacactgttctgataaaggaattaata
gacaatgtgagattagggattgcttgaataaaccacatgatctgttccaa
tgacgtgcctagcttttagtcacagtgtgagaaaattcgattagaggtct
tataaagactggcgctagatgaactgactggctgatcagcaactagcaga
attatctctaaaagacatcaaagccaactttctctgtgaataaaagtaca
gtgaattttgtaaggcccttgtagagatcaagtaatgtgaactacaaacg
aatgctgccttttaaaacttgaaagtgccccacaactcttcagaagtaga
aaatgggaacctagggggaaaagtgctttagaaagaatctaaaatcatcc
attttataatggctgctaatgaaagccaagaatggggtattactgacccg
tacccagtttctaaacacaagtctaaagacatagcggtcctctagacagg
acgcatcccattggtagccctcttaaaggccaacgtttcagtttccgagt
cagagcaacatagacagcagcttctaactggcatcagttggtactgacgg
gtttgcagactgcctgcaaaggaccctcatcagactcatagcagcacagt
ggcaacaaatgaaacaagtgaacacaggtaaccaaatcatcttgtaaata
atact
gaattccacatttcatgttctatagaggaggaggcctagaggtaagttgt
ataaggtcacaatttggtcaaatgtgtgaaattcttagcaaatccatagc
tgaggaatatatgtgatcctggagggacagtgacaaaatgcctcttatgg
gtggtcttatgggtgggaggcttggcatggaaccagaattctggtgctta
tataagctcacctcaccaccttccactcgtccgaggaagccattcctttt
tctcagaaagggaggctaacgtttctgtcccatggctcagaaaagcaacc
agaaatgaggcacctgaacacaccatgagagtaaagctgtcatccggcat
gctgggcaattattactatgcgagctgtttcccatcagtgaggaaatgag
ttagtactatttctccgctctggtcacctgcagtgtggcttgctgagctg
ctcaggtgatggtctgggcacaagctctcatatcagcgtcacgtgtacag
ccacatggctttgcggtgtgtgccgccacaggcttcagccgcctcagact
gagtatgtgttgctggccctggcagctcctgcgaggtcgccatgccctca
aaggaaggtagacatttcctgttattgtgtatctggcaaaaatgatgtct
ccatcttgtttttagtgaaaaaaaaattctgcctctcctgtgaggaaaaa
aaaaatattttcccacagacttgacttggtaccagatctactgaggtaac
cactgcagagatttttttattcccttctccgagtgtacatactcagtgaa
cagtgaacccttgaagcctaaagcttgccttctctggagtctcccatgcc
tgagcagaagctacttgtgagaacattagagacttcctgccttcccatta
ctattgccatgtgttagagctacacagattcatcattttcagggaaatgg
aagacaggtgagtgtcttggctcactagaatgagaggcacagcttcaggg
aaggacagccattccgacctcctctgttgtctctgcatcttgcaggtgga
agaggaaggactgcggttgctttcattgagcaaaacatcaccagtctttg
aaacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49628306_49629484
seq2: B6Ng01-066O16.b_46_1200 (reverse)

seq1  AGTATTTATTTTACAAAGATGATTTTGTGTTTACCTGTGTTCACTTTGTT  50
      ||||||   ||||| |||||||||   || |||||||||||||| |||||
seq2  AGTATT--ATTTAC-AAGATGATT---TGGTTACCTGTGTTCAC-TTGTT  43

seq1  TCATGTTGTTGCCACTGTTGGCTGCTATTGGAGTCTGATGGAGGGGTCCT  100
      |||| |||||||||||||  ||||||||  ||||||||||   |||||||
seq2  TCAT-TTGTTGCCACTGT--GCTGCTAT--GAGTCTGATG--AGGGTCCT  86

seq1  TTGCAGGGCAAGTCTGCAAACCCCGTCAGTACCAACTGATGCCAGGTTAG  150
      |||||||   |||||||||| ||||||||||||||||||||||| |||||
seq2  TTGCAGG--CAGTCTGCAAA-CCCGTCAGTACCAACTGATGCCA-GTTAG  132

seq1  AAGCTTGCTGTCTATGTTTGCTTCTGACTCGGAAACTGAAACGTTGGCCT  200
      |||| ||||||||||| |||| ||||||||||||||||||||||||||||
seq2  AAGC-TGCTGTCTATG-TTGC-TCTGACTCGGAAACTGAAACGTTGGCCT  179

seq1  TTAAGAGGGCTACCAATGGGATGCGTCTTGTCTAGAGGACCTGCTATTGT  250
      ||||||||||||||||||||||||||| ||||||||||||| |||| |||
seq2  TTAAGAGGGCTACCAATGGGATGCGTCCTGTCTAGAGGACC-GCTA-TGT  227

seq1  CTTTTAGACTTGTGTTTAGAAACTGGGTACGGGTCAGTAATACCCCATTC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTAGACTTGTGTTTAGAAACTGGGTACGGGTCAGTAATACCCCATTC  276

seq1  TTGGCTTTCATTAGCAGCCATTATAAAATGGATGATTTTAGATTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCATTAGCAGCCATTATAAAATGGATGATTTTAGATTCTTTCT  326

seq1  AAAGCACTTTTCCCCCTAGGTTCCCATTTTCTACTTCTGAAGAGTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTTTCCCCCTAGGTTCCCATTTTCTACTTCTGAAGAGTTGTGG  376

seq1  GGCACTTTCAAGTTTTAAAAGGCAGCATTCGTTTGTAGTTCACATTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTCAAGTTTTAAAAGGCAGCATTCGTTTGTAGTTCACATTACTT  426

seq1  GATCTCTACAAGGGCCTTACAAAATTCACTGTACTTTTATTCACAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTACAAGGGCCTTACAAAATTCACTGTACTTTTATTCACAGAGAA  476

seq1  AGTTGGCTTTGATGTCTTTTAGAGATAATTCTGCTAGTTGCTGATCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTTGATGTCTTTTAGAGATAATTCTGCTAGTTGCTGATCAGCC  526

seq1  AGTCAGTTCATCTAGCGCCAGTCTTTATAAGACCTCTAATCGAATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCATCTAGCGCCAGTCTTTATAAGACCTCTAATCGAATTTTCT  576

seq1  CACACTGTGACTAAAAGCTAGGCACGTCATTGGAACAGATCATGTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGACTAAAAGCTAGGCACGTCATTGGAACAGATCATGTGGTTT  626

seq1  ATTCAAGCAATCCCTAATCTCACATTGTCTATTAATTCCTTTATCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAATCCCTAATCTCACATTGTCTATTAATTCCTTTATCAGAAC  676

seq1  AGTGTGCTCTCGGGCCGCTTTTTTAAAAGGCCATGTTTATAAAGTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCTCGGGCCGCTTTTTTAAAAGGCCATGTTTATAAAGTTTTCA  726

seq1  TTGTTTGACAGGCTGTTACATTCTATATTCTAGCTGTAAAAATCCCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGACAGGCTGTTACATTCTATATTCTAGCTGTAAAAATCCCACTT  776

seq1  CTGAACAGCCAAGTGGATGGCTCCATTTCGTCACATGTTTCACATTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGCCAAGTGGATGGCTCCATTTCGTCACATGTTTCACATTGCTG  826

seq1  GAATGTATGCCAGTGTATGTTCTCTGAATAATTTACTATCTCATGCCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATGCCAGTGTATGTTCTCTGAATAATTTACTATCTCATGCCTAC  876

seq1  TTCTTGAAAGTTTACTCTGAGATGCCGTAGGAGTGCAGCCAGATGGTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAAGTTTACTCTGAGATGCCGTAGGAGTGCAGCCAGATGGTTTA  926

seq1  GACAAATAACCTCTGCCTGCCAGCCGTTGGGGTGATGATTAGAATGTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATAACCTCTGCCTGCCAGCCGTTGGGGTGATGATTAGAATGTTAT  976

seq1  TGAAGATAGTGGTTATGGTTGGGGCTTATAATGCCGACTGCATTTGATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAGTGGTTATGGTTGGGGCTTATAATGCCGACTGCATTTGATCA  1026

seq1  GTCCTTAGAGAATCCTGAATGTAGGTCTCATCTCTTCAAATGCTGAGCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAGAGAATCCTGAATGTAGGTCTCATCTCTTCAAATGCTGAGCAG  1076

seq1  TTTGCTTTAGTGGGCATCAGGTAAAACAGTCAGAGGTGTTAGCCTTTTAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAGTGGGCATCAGGTAAAACAGTCAGAGGTGTTAGCCTTTTAA  1126

seq1  AAGACGGAGAATCACATGGTGAAGAATTC  1179
      |||||||||||||||||||||||||||||
seq2  AAGACGGAGAATCACATGGTGAAGAATTC  1155

seq1: chr2_49509852_49510969
seq2: B6Ng01-066O16.g_71_1177

seq1  GAATTCCACATTTCATGTTCTATAGAGGAGGAGGCCTAGAGGTAAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTCATGTTCTATAGAGGAGGAGGCCTAGAGGTAAGTTGT  50

seq1  ATAAGGTCACAATTTGGTCAAATGTGTGAAATTCTTAGCAAATCCATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCACAATTTGGTCAAATGTGTGAAATTCTTAGCAAATCCATAGC  100

seq1  TGAGGAATATATGTGATCCTGGAGGGACAGTGACAAAATGCCTCTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATATATGTGATCCTGGAGGGACAGTGACAAAATGCCTCTTATGG  150

seq1  GTGGTCTTATGGGTGGGAGGCTTGGCATGGAACCAGAATTCTGGTGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTATGGGTGGGAGGCTTGGCATGGAACCAGAATTCTGGTGCTTA  200

seq1  TATAAGCTCACCTCACCACCTTCCACTCGTCCGAGGAAGCCATTCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTCACCTCACCACCTTCCACTCGTCCGAGGAAGCCATTCCTTTT  250

seq1  TCTCAGAAAGGGAGGCTAACGTTTCTGTCCCATGGCTCAGAAAAGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAGGGAGGCTAACGTTTCTGTCCCATGGCTCAGAAAAGCAACC  300

seq1  AGAAATGAGGCACCTGAACACACCATGAGAGTAAAGCTGTCATCCGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGGCACCTGAACACACCATGAGAGTAAAGCTGTCATCCGGCAT  350

seq1  GCTGGGCAATTATTACTATGCGAGCTGTTTCCCATCAGTGAGGAAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAATTATTACTATGCGAGCTGTTTCCCATCAGTGAGGAAATGAG  400

seq1  TTAGTACTATTTCTCCGCTCTGGTCACCTGCAGTGTGGCTTGCTGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTATTTCTCCGCTCTGGTCACCTGCAGTGTGGCTTGCTGAGCTG  450

seq1  CTCAGGTGATGGTCTGGGCACAAGCTCTCATATCAGCGTCACGTGTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGATGGTCTGGGCACAAGCTCTCATATCAGCGTCACGTGTACAG  500

seq1  CCACATGGCTTTGCGGTGTGTGCCGCCACAGGCTTCAGCCGCCTCAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGCTTTGCGGTGTGTGCCGCCACAGGCTTCAGCCGCCTCAGACT  550

seq1  GAGTATGTGTTGCTGGCCCTGGCAGCTCCTGCGAGGTCGCCATGCCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTGTTGCTGGCCCTGGCAGCTCCTGCGAGGTCGCCATGCCCTCA  600

seq1  AAGGAAGGTAGACATTTCCTGTTATTGTGTATCTGGCAAAAATGATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTAGACATTTCCTGTTATTGTGTATCTGGCAAAAATGATGTCT  650

seq1  CCATCTTGTTTTTAGTGAAAAAAAAATTCTGCCTCTCCTGTGAGGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGTTTTTAGTGAAAAAAAAATTCTGCCTCTCCTGTGAGGAAAAA  700

seq1  AAAAATATTTTCCCACAGACTTGACTTGGTACCAGATCTACTGAGGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTCCCACAGACTTGACTTGGTACCAGATCTACTGAGGTAAC  750

seq1  CACTGCAGAGATTTTTTTATTCCCTTCTCCGAGTGTACATACTCAGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGAGATTTTTTTATTCCCTTCTCCGAGTGTACATACTCAGTGAA  800

seq1  CAGTGAACCCTTGAAGCCTAAAGCTTGCCTTCTCTGGAGTCTCCCATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACCCTTGAAGCCTAAAGCTTGCCTTCTCTGGAGTCTCCCATGCC  850

seq1  TGAGGCAGAAGCTACTTGTGAGAACATTAGAGAC-TCCTGCC-TCCCATT  898
      ||| |||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGA-GCAGAAGCTACTTGTGAGAACATTAGAGACTTCCTGCCTTCCCATT  899

seq1  ACTATTGCCATGTGTTAGAGCTACACAGATTCATCATTTTCAGGGAAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTATTGCCATGTGTTAGAGCTACACAGATTCATCATTTTCAGGG-AAAT  948

seq1  GGAAAGCACAGGTGAGTGTCTTGGCTCACTAGAATGAGAGGCACAAGCTT  998
      ||||   ||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAA--GACAGGTGAGTGTCTTGGCTCACTAGAATGAGAGGCAC-AGCTT  995

seq1  CAGGGGAAGGACCAGCCATTCCGACCTCCTCTGTTGTCCTCTGCATCCTG  1048
      || |||||||| ||||||||||||||||||||||||| |||||||| || 
seq2  CA-GGGAAGGA-CAGCCATTCCGACCTCCTCTGTTGT-CTCTGCAT-CTT  1041

seq1  GCAGGTGGGAGAGGAAGGACTGCGGTTTGCTTTCATTGGAAGCAAAACAT  1098
      |||||||| |||||||||||||||| ||||||||||||  ||||||||||
seq2  GCAGGTGGAAGAGGAAGGACTGCGG-TTGCTTTCATTG--AGCAAAACAT  1088

seq1  CACCATGTCTTTGAAACAGT  1118
      ||||| ||||||||||||||
seq2  CACCA-GTCTTTGAAACAGT  1107