BAC Information

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BAC

Clone NameB6Ng01-066P05
Chromosome2 (Build37)3 (Build37)
Map Location 12,415,133 - 12,416,354103,387,301 - 103,387,896
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066P05.bB6Ng01-066P05.g
ACCDH885985DH885986
length1,197693
definitionDH885985|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P05, 5' end.DH885986|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,415,133 - 12,416,354)(103,387,301 - 103,387,896)
sequence
gaattcaaagagctctaaagggggtgccagtctgttaagtgcctgagcca
aagacatactggattggaattcgtctcctagatcctggtccctttattta
tcgatgttttgcaaggtaaaagaataaatgttatggctgtgtgcttcgac
actgaacatcaaaatcataaaaatataattgacttaattgagaaaggatt
tacaactcatatatctgaatttaaactcaaaagagcccaccacaaattct
cactgcacacccactgagtaagagcctaccatgggctctcactatgcatc
caactgattcagaccccactatggggtctcactgtgcgtccaactgagaa
agaccccactatggggtcttactgtgtgtccaactgagtggctaaaataa
caatttttaagataataagaaacctccaaactggttttcataatgtctct
actagtttacacttctatgaaataatgagacctgttactttatattgctc
cttcccagtgggacagagggtactgaaattataatgagtgttgaacagaa
caacatataaaagggtcagaactgtaacaaactcctgatggggtctcaga
gtggtgcattcaccttgacaaacagtccaagattttgttaaaatacttct
cataaagatatttttatgtctcagtaattcgacttctgtaaataaaccca
acaaacatgagaattgcacacacaaaaacggttatgaatgctcagagtag
tgaaatccctaaaacccaaaatgtccatcagctgatgaatggatgaatta
aatgtggtatatccagacaatggaataaccacaagcaatagaaagaaaac
aaagtattgatacgagatacaacctggatgctatcacctgaatgtacaca
catgattactctggtcgcatctggtggccattgtctctaatcctagcact
cagaaggcaaaggcaaaaagtcacctggccagtcaagactagtacatgtc
tgaagtgctaaatcaattaatacaaaacaaaaagtcttgttctagtaaaa
gagctgataatagggcactctacttacgatgctgcttggtgttcctaaca
ggtaagtcccagacccgaacatagggttacctttctggattgtcctagaa
ataacattcatttagttgaaggaagctttgtacatagtgctgagaaa
gaattcttttatccatgtgcctaactgtgcctttctctttcggtttgcgg
atgtgggggaaggaacggggacttggaataaagagtggggggcgggggat
gtgacctctgtttaaaagggttgctacccacaggttgagaaccactgctc
ttggggaagtcttagtgctggtagctgtcagccacagaaaggctctgagg
tctctatggtgggctgagtggggccaggggtggtgggaagatacttgaga
ataatctgcttttcatctcttttcatggatgcccctggctgttgatcctg
gcaaggactggatagggagccagaaggtagtgggggctccttgaaaggat
ggttgaggttcttaacctcaagatgtagcctagctttccctgagatctgg
atacaataaaagtacctagtggaacccaggcattttgtcaagcctagctc
tgaatggaatctggcatagttgaacttaaataagaaagaattgtaatcta
tttgtatatgcctgcttatatgagagtataaggtcaccggaacctatagg
agtctagagtttaatctgggacaaacaagtcatatgagaagaaagaatag
gatatggctacctgggccctggcccaagttctatgtctgactaactagtg
gactcttgaaagtccctctgctagactactgttgccatctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_12415133_12416354
seq2: B6Ng01-066P05.b_44_1240 (reverse)

seq1  TTTCATCAGCACTATGTACTAAAGCCTCTCCTTCTAACTGAATTGAAATG  50
      |||| |||||||||||||| |||||   |||||| |||| |||   ||||
seq2  TTTC-TCAGCACTATGTAC-AAAGC--TTCCTTC-AACTAAAT--GAATG  43

seq1  CTATTCTCTCTA-GACAACTCCAGAAAGTTACACCCTATGTTCTGTGTCT  99
       ||||   |||| ||||| ||||||||| || ||||||||||| | ||||
seq2  TTATT---TCTAGGACAA-TCCAGAAAGGTA-ACCCTATGTTC-GGGTCT  87

seq1  GTGGACTTACCTGTTTAGGTACACCCAAGCATGCAATCGTATAGTAGATG  149
      | ||||||||||| ||||| ||| ||||||| || |||||| |||||| |
seq2  G-GGACTTACCTG-TTAGGAACA-CCAAGCA-GC-ATCGTA-AGTAGA-G  130

seq1  TGCCCTATTATCAGCTTCTTTTACTTAGTACAAGACTTTTTGTTTTGTAT  199
      ||||||||||||||| |||||||| ||| |||||||||||||||||||||
seq2  TGCCCTATTATCAGC-TCTTTTAC-TAGAACAAGACTTTTTGTTTTGTAT  178

seq1  TAATTTGATTTTAGCACTTTCAGACATGTACTAGTCTTGACTGGCCAGGT  249
      ||| |||| |||||||| ||||||||||||||||||||||||||||||||
seq2  TAA-TTGA-TTTAGCAC-TTCAGACATGTACTAGTCTTGACTGGCCAGGT  225

seq1  GACTTTTTTGCCTTTGCCTTCTGAGTGCTAGGATTAGAGACAATGGCCAC  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-TTTTTGCCTTTGCCTTCTGAGTGCTAGGATTAGAGACAATGGCCAC  274

seq1  CAGATGCGACCAGAGTAATCATGTGTGTACATTCAGGTGATAGCATCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCGACCAGAGTAATCATGTGTGTACATTCAGGTGATAGCATCCAG  324

seq1  GTTGTATCTCGTATCAATACTTTGTTTTCTTTCTATTGCTTGTGGTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCTCGTATCAATACTTTGTTTTCTTTCTATTGCTTGTGGTTATT  374

seq1  CCATTGTCTGGATATACCACATTTAATTCATCCATTCATCAGCTGATGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCTGGATATACCACATTTAATTCATCCATTCATCAGCTGATGGA  424

seq1  CATTTTGGGTTTTAGGGATTTCACTACTCTGAGCATTCATAACCGTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGTTTTAGGGATTTCACTACTCTGAGCATTCATAACCGTTTTT  474

seq1  GTGTGTGCAATTCTCATGTTTGTTGGGTTTATTTACAGAAGTCGAATTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCAATTCTCATGTTTGTTGGGTTTATTTACAGAAGTCGAATTAC  524

seq1  TGAGACATAAAAATATCTTTATGAGAAGTATTTTAACAAAATCTTGGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATAAAAATATCTTTATGAGAAGTATTTTAACAAAATCTTGGACT  574

seq1  GTTTGTCAAGGTGAATGCACCACTCTGAGACCCCATCAGGAGTTTGTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAAGGTGAATGCACCACTCTGAGACCCCATCAGGAGTTTGTTAC  624

seq1  AGTTCTGACCCTTTTATATGTTGTTCTGTTCAACACTCATTATAATTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGACCCTTTTATATGTTGTTCTGTTCAACACTCATTATAATTTCA  674

seq1  GTACCCTCTGTCCCACTGGGAAGGAGCAATATAAAGTAACAGGTCTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCTGTCCCACTGGGAAGGAGCAATATAAAGTAACAGGTCTCATT  724

seq1  ATTTCATAGAAGTGTAAACTAGTAGAGACATTATGAAAACCAGTTTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGAAGTGTAAACTAGTAGAGACATTATGAAAACCAGTTTGGAG  774

seq1  GTTTCTTATTATCTTAAAAATTGTTATTTTAGCCACTCAGTTGGACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATTATCTTAAAAATTGTTATTTTAGCCACTCAGTTGGACACAC  824

seq1  AGTAAGACCCCATAGTGGGGTCTTTCTCAGTTGGACGCACAGTGAGACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACCCCATAGTGGGGTCTTTCTCAGTTGGACGCACAGTGAGACCC  874

seq1  CATAGTGGGGTCTGACTCAGTTGGATGCATAGTGAGAGCCCATGGTAGGC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATAGTGGGGTCTGAATCAGTTGGATGCATAGTGAGAGCCCATGGTAGGC  924

seq1  TCTTACTCAGTGGGTGTGCAGTGAGAATTTGTGGTGGGCTCTTTTGAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCAGTGGGTGTGCAGTGAGAATTTGTGGTGGGCTCTTTTGAGTT  974

seq1  TCTATTCAGATATATGAGTTCTAAAACCTTTCTCAATTTTGTCAATTATA  1049
      |  ||||||||||||||||| |||| ||||||||||||  ||||||||||
seq2  TAAATTCAGATATATGAGTTGTAAATCCTTTCTCAATTAAGTCAATTATA  1024

seq1  TTTTTATGATTTTGATGTTCATTCTTGAAGTACACAGGCCTTACATTTAT  1099
      ||||||||||||||||||||| | | |||| |||||| | | ||||||||
seq2  TTTTTATGATTTTGATGTTCAGTGTCGAAGCACACAGCCATAACATTTAT  1074

seq1  TTTTTTACCTTGCAAAACATCACTAAATAAAGGGAACAGGATCTATGACT  1149
      | |||||||||||||||||||  |||||||||||| ||||||||| ||  
seq2  TCTTTTACCTTGCAAAACATCGATAAATAAAGGGACCAGGATCTAGGAGA  1124

seq1  TGAATTCCAATCCAGTATGTCTT----TCA--CATTTAAAACCAACAGAC  1193
       ||||||||||||||||||||||    |||  || ||      |||||||
seq2  CGAATTCCAATCCAGTATGTCTTTGGCTCAGGCACTT------AACAGAC  1168

seq1  TGGCATACACTTTATAGCTCTTTGAATTC  1222
      |||||  | ||||| ||||||||||||||
seq2  TGGCACCCCCTTTAGAGCTCTTTGAATTC  1197

seq1: chr3_103387301_103387896
seq2: B6Ng01-066P05.g_164_758

seq1  ATGTGACCTCTGTTTAAAAGGGTTGCTACCCACAGGTTGAGAACCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTCTGTTTAAAAGGGTTGCTACCCACAGGTTGAGAACCACTGC  50

seq1  TCTTGGGGAAGTCTTAGTGCTGGTAGCTGTCAGCCACAGAAAGGCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGAAGTCTTAGTGCTGGTAGCTGTCAGCCACAGAAAGGCTCTGA  100

seq1  GGTCTCTATGGTGGGCTGAGTGGGGCCAGGGGTGGTGGGAAGATACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTATGGTGGGCTGAGTGGGGCCAGGGGTGGTGGGAAGATACTTGA  150

seq1  GAATAATCTGCTTTTCATCTCTTTTCATGGATGCCCCTGGCTGTTGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCTGCTTTTCATCTCTTTTCATGGATGCCCCTGGCTGTTGATCC  200

seq1  TGGCAAGGACTGGATAGGGAGCCAGAAGGTAGTGGGGGCTCCTTGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGACTGGATAGGGAGCCAGAAGGTAGTGGGGGCTCCTTGAAAGG  250

seq1  ATGGTTGAGGTTCTTAACCTCAAGATGTAGCCTAGCTTTCCCTGAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAGGTTCTTAACCTCAAGATGTAGCCTAGCTTTCCCTGAGATCT  300

seq1  GGATACAATAAAAGTACCTAGTGGAACCCAGGCATTTTGTCAAGCCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAATAAAAGTACCTAGTGGAACCCAGGCATTTTGTCAAGCCTAGC  350

seq1  TCTGAATGGAATCTGGCATAGTTGAACTTAAATAAGAAAGAATTGTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGGAATCTGGCATAGTTGAACTTAAATAAGAAAGAATTGTAATC  400

seq1  TATTTGTATATGCCTGCTTATATGAGAGTATAAGGTCACCGGAACCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATATGCCTGCTTATATGAGAGTATAAGGTCACCGGAACCTATA  450

seq1  GGAGTCTAGAGTTTAATCTGGGACAAACAAGTCATAGGAGAAGAAAGAAT  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAGTCTAGAGTTTAATCTGGGACAAACAAGTCATATGAGAAGAAAGAAT  500

seq1  AGGATAGTGGCTACCTGGGCCCTGGCCCAAGTTCTATGTCTGACTAACCT  550
      |||||| |||||||||||||||||||||||||||||||||||||||||  
seq2  AGGATA-TGGCTACCTGGGCCCTGGCCCAAGTTCTATGTCTGACTAACTA  549

seq1  GTGGACTCTTGAAAGTCCCTCTGCTAGACTACTGTTGCCATCTCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTCTTGAAAGTCCCTCTGCTAGACTACTGTTGCCATCTCTA  595