BAC Information

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BAC

Clone NameB6Ng01-067I12
Chromosome2 (Build37)
Map Location 80,331,005 - 80,331,512
singlet/doubletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I12.bB6Ng01-067I12.g
ACCDH886391DH886392
length9601,164
definitionDH886391|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I12, 5' end.DH886392|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcactaaaaccatctggtcctgggctctttttggttgggagac
ttttaacgactgcttctatttctttaggggatgtgggactgtttagatgg
tttatctgatcctgatttaactttgatacctgttgtctttctagaaaatc
atctgtttcatcttgttttttcagttttgttgaatatatgcttttatagt
aggatctgatgattttaaaaatttattcagtttcagttgttatgtctccc
ttttcatttctgattttgttaattggatactgtctcagtgccctctggtt
agtctggctaagggtttatctatcttgttgattttcccataaaccagctc
ctggttttgtttctttgtatagctctttttgtttctacttggttgatttc
agccctgagtttgattatttcctgcctcctactcctcttgtatctatttg
cttctttttgttcgaaaactttcaggtgtgctgttaagctgctagtgtat
gctctctccagtttctttttgtaggcactcagagctgagttttcctctta
gcactgctttcattgtgtcccataagttttggtatgatgtgtcttcattt
tcactaaattctaaaaagtctttaatttctttctttatttcttccctgac
caagttatcattgagcagagagttgttcagcttccatgtatatgaggact
ttctgttgtttttgttgttattgaagaccagccttagttcttgatggtct
tatagaatgcttgagattatttcaatcttcttgtatctgttgaagcttgt
tttgtgaccaattatatggtcagttttggagaaggtaccatgaagtgctg
agaagaaggatattcttttgatttagggtgaaatgttatgtagatattgt
atgttctgtagatatgttatttccagctcgtgggatcccagaagactcta
agaactgctg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccagtaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gctcctcaacagaggaatggatacaaaaaatgtggtacatttgcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactaataagtggattattagcccagaaa
cttagaatacccaagatacaagatacaatttatgaaacacatgaaactca
agaagaatgaagaccaaggtgtggacactttgccccttctcagaaatggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgtgac
gaaaggatggaccatctagagactgccatatccagggatccatcccataa
tcagcctccaaacgctgacaccattgcatacattaacaagattttgctga
aaggaccctgatatagctgtctcttgtgagactatgccagggcctagcaa
acacagaagtgatgctcacagtcagctattggatggatcacagggcctcc
aggaagagctagagaagtatccaggagctaagagatctgcaccctatagt
gcacaatatcatgaactaccagtaccccggagctcttgatctagctgcat
atgtatcaaagaatggcctagtcggcatcctggaagaaggccattgaacc
cgtaaccttatagcccatatcagggaatgccaggccaaaagtgatggtgg
tgccatggaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331005_80331512
seq2: B6Ng01-067I12.b_53_384 (reverse)

seq1  GAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACA  50
      |||||||||||||||||||||||||||||||||||| || ||||||||| 
seq2  GAAAATCAACAAGATAGATAAACCCTTAGCCAGACTAACCAGAGGGCACT  50

seq1  GGGACAGCATCCTAATTAACAAAATTAGAAATGAAAAGGGAAACATAACA  100
      | ||||| |||| |||||||||||| ||||||||||||||| ||||||||
seq2  GAGACAGTATCC-AATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  99

seq1  ACAGATCCTGAAGAAATACAAAGCACCATCAGATCCTTCTACAAAGGGCT  150
      || ||  ||||| ||||    |  | ||||||||||| ||| ||| |  |
seq2  ACTGAAACTGAATAAATTTTTAAAATCATCAGATCCTACTATAAAAGCAT  149

seq1  ATACTCAACAAAACTGGAAAACCTGGATGAAATGGACGAATTTCTTTTTT  200
      ||| |||||||||||| |||| |  |||||||                  
seq2  ATATTCAACAAAACTGAAAAAACAAGATGAAA------------------  181

seq1  CTTTTTTCTTTTTTTGGTTTTTCGAGACAGCGTTTCTCTTTATAACCCTG  250
                                                        
seq2  --------------------------------------------------  181

seq1  GCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  300
                                                 ||||   
seq2  -------------------------------------------CAGA---  185

seq1  CCGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  350
                                             ||         
seq2  ---------------------------------------TG---------  187

seq1  GCCAGGCTTAACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCA  400
                   | |||||||| ||| | |||||| |||||||||||||
seq2  -------------ATTTTCTAGAAAGACAACAGGTATCAAAGTTAAATCA  224

seq1  GGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAG  450
      ||||||| | ||  ||||||||||||| | ||||||||||||||||||||
seq2  GGATCAGATAAACCATCTAAACAGTCCCACATCCCCTAAAGAAATAGAAG  274

seq1  CAGCCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTT  500
      ||| | |||| ||||||||||||||||| ||||||||||||||||| |||
seq2  CAGTCGTTAAAAGTCTCCCAACCAAAAAGAGCCCAGGACCAGATGGTTTT  324

seq1  AGTGCAGA  508
      ||||||||
seq2  AGTGCAGA  332