BAC Information

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BAC

Clone NameB6Ng01-067I23
Chromosome2 (Build37)
Map Location 38,518,514 - 38,659,641
singlet/doubletdoublet
Overlap geneLOC674251, Nr5a1, Nr6a1
Upstream geneLOC639491, Dennd1a, LOC100040947, Lhx2, Nek6, Psmb7
Downstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I23.bB6Ng01-067I23.g
ACCDH886411DH886412
length1,098556
definitionDH886411|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I23, 5' end.DH886412|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,518,514 - 38,519,627)(38,659,119 - 38,659,641)
sequence
gaattcacagctgttcagttttaatcacaatccatttgggaacattcttg
ccaccccaaaaagaaacattatgcctagtgttcagagccaccagcctgat
aaaagtgaaactatcttaaagcttagagagaagaggtccatggacttgtt
atttggctgctgtttctttcctactctggcttttggtttccttctaatac
aaataagcatagttattttcccatctgtctgttggcttcatgtatcccag
gctaccctcaacattaagtagttgcagttcagaccttgaagctctgatcc
tctgcctccactccccaagtgctgtaaccccagcttgcctggtttatgcc
atgctggagatggggtccaggcctttgtgtctgctaggaaagcactctga
ccactaagcttcaccctcagcatagcttaatgaaacagttttgctatgta
gtccaggctggccttgaactcactctgtagctctaggctgaccccaaact
tgtagcagccctcttgtctcagcctttcaagtactgggatgacagacata
tgttatacccaatttcttttttgtttgtttgtttgatttttttcgagaca
gggtttctctgtgtagccctggctctcctggaactcactctgtagaccag
gctgacctcgaactcagaaatctgcctgcctctgcctcccaagtgctggg
attaaaggcgtgtgccaccaccgcctggcacacccaatttcaaatggtca
tgtattgagcacctgctttaggctgggcaccaagatgcaggtgtcataga
taaaccaagatcaaagacttatcccactatagaaaggcaaggactgggtg
aggaatgtcctaatgcccagaaaaggccactaagtgcatctgcctccaga
atatcccagaaacaggagggccagggagcagaagagctcttcttcacagg
acaagcacacacacacacacacacacacacacacacacacacacggtggg
ggtgctagtactaaatattgttccttcagtggcacagcaagtgtcagcct
taggggtcatagcagaccctcaatagcccctaacctagacacagatca
atggtcttaaatgaattcattttttttaagattttatttattttatgtat
gtgagtacgctgtagctgtacagatggttgtgagccttcatttggttgta
gggaattgaatttttaggaccttcggtcgactccatttgctctggtctcc
tccacccgctcagtccctgcttgctttggccctaagatttatttattatt
atacataagtacactgtagctgccttcagacacaccagacgagggcgtca
gatcccattacagatggttatgagccaccatgtggttgctgggaattgaa
ctcaggacctttggaagagcagtcagtgctcttacccgctgagccatctc
tccagccctgaattcacttttaagtgatcaggatttttgacagatggcaa
gataactcaatgagcttgctgccaagcctgattacgtgaattccatccct
aggaatccacatagtggaaggagagagatgactccacctagttgtcctct
gacctctgtacatgtgccagcacacacacaaagggtggtgggggggtaaa
tgtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38518514_38519627
seq2: B6Ng01-067I23.b_50_1147

seq1  GAATTCACAGCTGTTCAGTTTTAATCACAATCCATTTGGGAACATTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTGTTCAGTTTTAATCACAATCCATTTGGGAACATTCTTG  50

seq1  CCACCCCAAAAAGAAACATTATGCCTAGTGTTCAGAGCCACCAGCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAAAAAGAAACATTATGCCTAGTGTTCAGAGCCACCAGCCTGAT  100

seq1  AAAAGTGAAACTATCTTAAAGCTTAGAGAGAAGAGGTCCATGGACTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAAACTATCTTAAAGCTTAGAGAGAAGAGGTCCATGGACTTGTT  150

seq1  ATTTGGCTGCTGTTTCTTTCCTACTCTGGCTTTTGGTTTCCTTCTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTGCTGTTTCTTTCCTACTCTGGCTTTTGGTTTCCTTCTAATAC  200

seq1  AAATAAGCATAGTTATTTTCCCATCTGTCTGTTGGCTTCATGTATCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCATAGTTATTTTCCCATCTGTCTGTTGGCTTCATGTATCCCAG  250

seq1  GCTACCCTCAACATTAAGTAGTTGCAGTTCAGACCTTGAAGCTCTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTCAACATTAAGTAGTTGCAGTTCAGACCTTGAAGCTCTGATCC  300

seq1  TCTGCCTCCACTCCCCAAGTGCTGTAACCCCAGCTTGCCTGGTTTATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCACTCCCCAAGTGCTGTAACCCCAGCTTGCCTGGTTTATGCC  350

seq1  ATGCTGGAGATGGGGTCCAGGCCTTTGTGTCTGCTAGGAAAGCACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGATGGGGTCCAGGCCTTTGTGTCTGCTAGGAAAGCACTCTGA  400

seq1  CCACTAAGCTTCACCCTCAGCATAGCTTAATGAAACAGTTTTGCTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGCTTCACCCTCAGCATAGCTTAATGAAACAGTTTTGCTATGTA  450

seq1  GTCCAGGCTGGCCTTGAACTCACTCTGTAGCTCTAGGCTGACCCCAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCTGGCCTTGAACTCACTCTGTAGCTCTAGGCTGACCCCAAACT  500

seq1  TGTAGCAGCCCTCTTGTCTCAGCCTTTCAAGTACTGGGATGACAGACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGCCCTCTTGTCTCAGCCTTTCAAGTACTGGGATGACAGACATA  550

seq1  TGTTATACCCAATTTCTTTTTTGTTTGTTTGTTTGATTTTTTTCGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATACCCAATTTCTTTTTTGTTTGTTTGTTTGATTTTTTTCGAGACA  600

seq1  GGGTTTCTCTGTGTAGCCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTGTAGCCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  650

seq1  GCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGG  700

seq1  ATTAAAGGCGTGTGCCACCACCGCCTGGCACACCCAATTTCAAATGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCGTGTGCCACCACCGCCTGGCACACCCAATTTCAAATGGTCA  750

seq1  TGTATTGAGCACCTGCTTTAGGCTGGGCACCAAGATGCAGGTGTCATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAGCACCTGCTTTAGGCTGGGCACCAAGATGCAGGTGTCATAGA  800

seq1  TAAACCAAGATCAAAGACTTATCCCACTATAGAAGGGCAAGGACTGGGTG  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAACCAAGATCAAAGACTTATCCCACTATAGAAAGGCAAGGACTGGGTG  850

seq1  AGGAATGTCCTAATGCCCAGAAAAGGCCACTAAGTGCATCTGCCTCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAATGTCCTAATGCCCAGAAAAGGCCACTAAGTGCATCTGCCTCCAG-  899

seq1  AATATCCCAGAAACAGGAGGGGCCAGGGAGCAGAAGAGCTCTTCTTCACA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATATCCCAGAAACAGGA-GGGCCAGGGAGCAGAAGAGCTCTTCTTCACA  948

seq1  GGACAAGCACACACACACACACACACACACACACACACACACACACGGGT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACAAGCACACACACACACACACACACACACACACACACACACAC-GGT  997

seq1  GGGGGTGCTAGTACTAAATATTTGTTTCTCTCCAGTGGCCACAGCCAGTG  1050
      |||||||||||||||||||| |||||   || |||||| |||||| ||||
seq2  GGGGGTGCTAGTACTAAATA-TTGTT--CCTTCAGTGG-CACAGCAAGTG  1043

seq1  TCAGGCCTTAGGGGGTCCATTAAGCAGACTCTCACATCAGCCCCCAACCC  1100
      ||| ||||||||||   |||  ||||||| |||| || |||||| |||| 
seq2  TCA-GCCTTAGGGG--TCAT--AGCAGACCCTCA-AT-AGCCCCTAACC-  1085

seq1  TAAGACACAGATCA  1114
        ||||||||||||
seq2  -TAGACACAGATCA  1098

seq1: chr2_38659119_38659641
seq2: B6Ng01-067I23.g_107_629 (reverse)

seq1  ATTACATTTACCCCCCCACCACCCTTTGTGTGTGTGCTGGCACATGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTACCCCCCCACCACCCTTTGTGTGTGTGCTGGCACATGTACA  50

seq1  GAGGTCAGAGGACAACTAGGTGGAGTCATCTCTCTCCTTCCACTATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAGGACAACTAGGTGGAGTCATCTCTCTCCTTCCACTATGTGG  100

seq1  ATTCCTAGGGATGGAATTCACGTAATCAGGCTTGGCAGCAAGCTCATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGGGATGGAATTCACGTAATCAGGCTTGGCAGCAAGCTCATTGA  150

seq1  GTTATCTTGCCATCTGTCAAAAATCCTGATCACTTAAAAGTGAATTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTGCCATCTGTCAAAAATCCTGATCACTTAAAAGTGAATTCAGG  200

seq1  GCTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCCAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCCAAAGGT  250

seq1  CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCATAACCATCTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCATAACCATCTGTAAT  300

seq1  GGGATCTGACGCCCTCGTCTGGTGTGTCTGAAGGCAGCTACAGTGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGACGCCCTCGTCTGGTGTGTCTGAAGGCAGCTACAGTGTACTT  350

seq1  ATGTATAATAATAAATAAATCTTAGGGCCAAAGCAAGCAGGGACTGAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATAATAAATAAATCTTAGGGCCAAAGCAAGCAGGGACTGAGCG  400

seq1  GGTGGAGGAGACCAGAGCAAATGGAGTCGACCGAAGGTCCTAAAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGAGACCAGAGCAAATGGAGTCGACCGAAGGTCCTAAAAATTCA  450

seq1  ATTCCCTACAACCAAATGAAGGCTCACAACCATCTGTACAGCTACAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTACAACCAAATGAAGGCTCACAACCATCTGTACAGCTACAGCGT  500

seq1  ACTCACATACATAAAATAAATAA  523
      |||||||||||||||||||||||
seq2  ACTCACATACATAAAATAAATAA  523