BAC Information

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BAC

Clone NameB6Ng01-068C11
Chromosome8 (Build37)2 (Build37)
Map Location 114,574,905 - 114,575,40259,850,863 - 59,851,435
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
Downstream geneLOC100042040, Cntnap4, LOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C11.bB6Ng01-068C11.g
ACCDH886824DH886825
length352567
definitionDH886824|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C11, 5' end.DH886825|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,574,905 - 114,575,402)(59,850,863 - 59,851,435)
sequence
atatagccagttaattgtcacagaatgcttcagttgattttcttttcttt
tccttttttctctttttggtttatccagacaaggtttctctgtgttcctc
tggctatcttggaactctctctatagtccatgttggcctttaactcagag
atcagcctgcttctgcctcctgagtactaggattaaaggcatgcgcacca
ctgaacacctgctgtagttaatctctctttctttcaagagttctttattt
tatttacatgagtaccctgtagctgtcttcagacacaccagaagagggca
ttggatcccattacagatatttgtgagccaccatgtggttgctaggaact
ga
caggtcagcttggactttagagtaaggctctgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgttttcacacccatgtgtatgttatatgcat
gtgttggataggtgtcttcacaagtgtacttgagcaccaagatgtcaaat
gttaccttagtaaccccatctgagatagggcccctctctgaatctggagc
tctctgcagtaacagacacatgctgctaggaccagcatttaagtggacac
tggtgtccaagctcaggccctcacacgtgcatgcatggcaaccactctgc
caagggagctttctccatggcccaaatcacaccgtgctaaattacaggtt
tctgataaatcttctaaaaatttacttaagatatttcaagagacctgaaa
atgagaaaataatccaaaagcaaatcactggcttttatatttattactca
aaaaataatctattctgggagtatctttttctatccaaaagattaatcac
tcctttgaaagaaaatattagtagggaagaggttttcctagacaaataga
tatatcagaataataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114574905_114575402
seq2: B6Ng01-068C11.b_90_401

seq1  TCTTTTCTTTTCCTTTTCCTTTCTTCTTCTTTTTTTTTTTCTTCAAGACA  50
      |||||||||||||||||         |||| |||||  ||  || |||||
seq2  TCTTTTCTTTTCCTTTT---------TTCTCTTTTTGGTTTATCCAGACA  41

seq1  AGGTTTCTCTGTGTAGTCTTGACTACCCTGGAGCTCACTCTGTGGACCAG  100
      ||||||||||||||     || ||| | |||| ||| |||| | | ||| 
seq2  AGGTTTCTCTGTGTTCCTCTGGCTATCTTGGAACTCTCTCTATAGTCCAT  91

seq1  GCTGGCCTTGAACTCATTGATCCGCCTGCCTTTCTGCAATGTGCAAAGGC  150
      | ||||||| ||||||  |||| ||||||  ||||||             
seq2  GTTGGCCTTTAACTCAGAGATCAGCCTGC--TTCTGC-------------  126

seq1  AGTGTGGAGAGTGCTGGGATTAAAGGTATGTGTCAACAGCACCCGTACAG  200
          |   |||| || |||||||||| ||| |    || || | | ||| 
seq2  ---CTCCTGAGTACTAGGATTAAAGGCATGCG----CACCA-CTGAACAC  168

seq1  AGGCATTTTCTTTTTTTCTTTTTCTTTACATAGGAACAATGCAAGTAATT  250
        || | |  ||  | ||| |||||||              ||||     
seq2  CTGC-TGTAGTTAATCTCTCTTTCTTT--------------CAAG-----  198

seq1  TTATTTCTTTAATTTTACAATGTGAAATGTATGTGTTGACTTGACTTCTC  300
        | |||||| ||||||                                 
seq2  --AGTTCTTT-ATTTTA---------------------------------  212

seq1  ATATCCACAACTCAACAGATGGGTGAATCCAGATCATTACATGAAGATGA  350
                                          ||||||||      
seq2  -----------------------------------TTTACATGA------  221

seq1  CTGTATTATTTCCAAAGTTTATTCCAATCCATTTTTTAAAAAAAAGATTT  400
        |||                       || |                  
seq2  --GTA-----------------------CCCT------------------  228

seq1  ATTTATTTATTAGATGTGTGACTTCAGACACTCCAGAAGAGGGCATCAGA  450
                ||| |||    |||||||||| ||||||||||||||  ||
seq2  ---------GTAGCTGT----CTTCAGACACACCAGAAGAGGGCATTGGA  265

seq1  TTTTTGTTACTGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGA  498
       |    |||| |||  ||||||||||||||||||||||| |||| |||
seq2  -TCCCATTACAGATATTTGTGAGCCACCATGTGGTTGCTAGGAACTGA  312

seq1: chr2_59850863_59851435
seq2: B6Ng01-068C11.g_69_641

seq1  GAATTCCAGGTCAGCTTGGACTTTAGAGTAAGGCTCTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCTTGGACTTTAGAGTAAGGCTCTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCACACCCATGTGTATGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCACACCCATGTGTATGTTAT  100

seq1  ATGCATGTGTTGGATAGGTGTCTTCACAAGTGTACTTGAGCACCAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGCATGTGTTGGATAGGTGTCTTCACAAGTGTACTTGAGCACCAAGATG  150

seq1  TCAAATGTTACCTTAGTAACCCCATCTGAGATAGGGCCCCTCTCTGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTACCTTAGTAACCCCATCTGAGATAGGGCCCCTCTCTGAATC  200

seq1  TGGAGCTCTCTGCAGTAACAGACACATGCTGCTAGGACCAGCATTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCTCTGCAGTAACAGACACATGCTGCTAGGACCAGCATTTAAGT  250

seq1  GGACACTGGTGTCCAAGCTCAGGCCCTCACACGTGCATGCATGGCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGTGTCCAAGCTCAGGCCCTCACACGTGCATGCATGGCAACCA  300

seq1  CTCTGCCAAGGGAGCTTTCTCCATGGCCCAAATCACACCGTGCTAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAAGGGAGCTTTCTCCATGGCCCAAATCACACCGTGCTAAATTA  350

seq1  CAGGTTTCTGATAAATCTTCTAAAAATTTACTTAAGAGATCTCAAGAGAC  400
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  CAGGTTTCTGATAAATCTTCTAAAAATTTACTTAAGATATTTCAAGAGAC  400

seq1  CTGAAAATGAGAAAATAATCCAAAAGCAAATCACTGGCTTTTATATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATGAGAAAATAATCCAAAAGCAAATCACTGGCTTTTATATTTAT  450

seq1  TACTCAATAAATAATCTATTCAGGGAGTATCTTTTTCTATCCAAAAGATT  500
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTCAAAAAATAATCTATTCTGGGAGTATCTTTTTCTATCCAAAAGATT  500

seq1  AAGCACTCCTTTGAAAGAAAATATTTGTAGGGAAGAGGTTATCCTAGACA  550
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AATCACTCCTTTGAAAGAAAATATTAGTAGGGAAGAGGTTTTCCTAGACA  550

seq1  AATAGATATATCAGAATAATAAC  573
      |||||||||||||||||||||||
seq2  AATAGATATATCAGAATAATAAC  573