BAC Information

Click to search

BAC

Clone NameB6Ng01-068H11
Chromosome2 (Build37)4 (Build37)
Map Location 142,776,671 - 142,777,22392,810,183 - 92,811,197
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H11.bB6Ng01-068H11.g
ACCDH887045DH887046
length1,0021,012
definitionDH887045|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H11, 5' end.DH887046|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,671 - 142,777,223)(92,810,183 - 92,811,197)
sequence
gaattgtttgttcagttgtgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctacctgatttaggatacgtaaagatcctttcccaatctgttggtggtct
ttttgtcttatttatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaaaagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatatatt
tgtgactatgaaaaggtgtgtttccctatttctttctcagctcaacatcc
tt
gaattcccaaatcacagaatcacagagagcttacaattatttgtatttct
agcagacgtcagttaggaatcagtttgattgtatggagttattcttaaag
cttaatttcttctttagagatggtgtccatagatgaacgtgcaaagctgc
aaaccaagtggggcatcaatctgatatctgcattatggcctttgtctact
ggctaaactgatgtctataaaaattaatcttgacactcttcttttttttt
tctttttttttatttggtttttcgagacagggtttctctgtatagtcttg
gctgtcctggaactcactttgtagaccaggctggccttgaactcagaaat
ctgcctgtctctccctcccaagtgctgggattaaaggcatgcaccactac
cgcccggcatttgacactcttcttaaccacaaacaaaaaatgacatgaaa
taggtcactaaactcaatatgttcatctacatctggaatcctgacacata
gaaggctgcagcagggagaacattgagtctgagtgtatccttaaataaat
gatgtgcttcaggttatcttatcaacagattggaaataccaacaaacaaa
caaataaaatagatatttaattgatttatatctaagatctaaaacttaca
aaattcctagttaaaatccattatgaaagaaaagatttcttgatattaaa
ttgcaaatagttttcttaagtaagattaaaagcaatgaacaaagtggaaa
acctgttattttttaattgacatttaaagattttgcaattgttgggattg
aaatatttcaatacaggttgtctgcagactagatacacttggtcattgct
cagaacaagtggacatctttagaaccaagtaaaatgatatacagttcatg
gataaggcttcataaatcagaacttttagcttagctcttaaataagaaaa
aaaggaaagaacaaaaaaggaaagataaagagtattatagatcggacaga
cgaaagggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776671_142777223
seq2: B6Ng01-068H11.b_60_612 (reverse)

seq1  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100

seq1  CAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  150

seq1  GTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTA  200
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GTTATCATGTAGAAGAATGCGAATTGATCCATACTTATCTCCTTGTACTA  200

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  250

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  300

seq1  GGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  350

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  400

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  450
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  450

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  500
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATCCTAAATCAGGTAGGGGACTAATATCCAACATATATAAAGAACTCA  500

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  550

seq1  CAA  553
      |||
seq2  CAA  553

seq1: chr4_92810183_92811197
seq2: B6Ng01-068H11.g_69_1080 (reverse)

seq1  TTCTCCCTTTCTGTCTGTCCG-TCTATATATCTCTTTTTCTTTCCTTTTT  49
      ||||||||||| ||||||||| ||||||   |||||| ||||||||||||
seq2  TTCTCCCTTTC-GTCTGTCCGATCTATAATACTCTTTATCTTTCCTTTTT  49

seq1  TGTTCTTTCCTTTTTTTCTTAATTTTAGGGCTTATGCTAAAAGTTTCTTG  99
      |||||||||||||||||||| |||| || || || ||||||||||   ||
seq2  TGTTCTTTCCTTTTTTTCTT-ATTTAAGAGC-TAAGCTAAAAGTT--CTG  95

seq1  ATTTATGAAGCCTTTATCCATGAACTGTATATCATTTTACTTGGTTCTAA  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAGCC-TTATCCATGAACTGTATATCATTTTACTTGGTTCTAA  144

seq1  AGATGTTCCACTTGTTCTGAGCAATGACCAAGTGTATCTAGTCTGCAGAC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATG-TCCACTTGTTCTGAGCAATGACCAAGTGTATCTAGTCTGCAGAC  193

seq1  AACCTGTATTGAAATATTTCAATCCCAACAATTGCAAAATCTTTAAATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTATTGAAATATTTCAATCCCAACAATTGCAAAATCTTTAAATGT  243

seq1  CAATT-AAAAATAACAGGTTTTCCACTTTGTTCATTGCTTTTAATCTTAC  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAAATAACAGGTTTTCCACTTTGTTCATTGCTTTTAATCTTAC  293

seq1  TTAAG-AAACTATTTGCAATTTAATATC-AGAAATCTTTTCTTTCATAAT  346
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAAGAAAACTATTTGCAATTTAATATCAAGAAATCTTTTCTTTCATAAT  343

seq1  GGATTTTAACTAGGAATTTTGTAAGTTTTAGATCTTAGATATAAATCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAACTAGGAATTTTGTAAGTTTTAGATCTTAGATATAAATCAAT  393

seq1  TAAATATCTATTTTATTTGTTTGTTTGTTGGTATTTCCAATCTGTTGATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTATTTTATTTGTTTGTTTGTTGGTATTTCCAATCTGTTGATA  443

seq1  AGATAACCTGAAGCACATCATTTATTTAAGGATACACTCAGACTCAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCTGAAGCACATCATTTATTTAAGGATACACTCAGACTCAATGT  493

seq1  TCTCCCTGCTGCAGCCTTCTATGTGTCAGGATTCCAGATGTAGATGAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCTGCAGCCTTCTATGTGTCAGGATTCCAGATGTAGATGAACA  543

seq1  TATTGAGTTTAGTGACCTATTTCATGTCATTTTTTGTTTGTGGTTAAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTTAGTGACCTATTTCATGTCATTTTTTGTTTGTGGTTAAGAA  593

seq1  GAGTGTCAAATGCCGGGCGGTAGTGGTGCATGCCTTTAATCCCAGCACTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAAATGCCGGGCGGTAGTGGTGCATGCCTTTAATCCCAGCACTT  643

seq1  GGGAGGGAGAGACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGAGACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  693

seq1  AAGTGAGTTCCAGGACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAA  743

seq1  AACCAAATAAAAAAAAAGAAAAAAAAAAGAAGAGTGTCAAGATTAATTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATAAAAAAAAAGAAAAAAAAAAGAAGAGTGTCAAGATTAATTTT  793

seq1  TATAGACATCAGTTTAGCCAGTAGACAAAGGCCATAATGCAGATATCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATCAGTTTAGCCAGTAGACAAAGGCCATAATGCAGATATCAGA  843

seq1  TTGATGCCCCACTTGGTTTGCAGCTTTGCACGTTCATCTATGGACACCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCCCACTTGGTTTGCAGCTTTGCACGTTCATCTATGGACACCAT  893

seq1  CTCTAAAGAAGAAATTAAGCTTTAAGAATAACTCCATACAATCAAACTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGAAGAAATTAAGCTTTAAGAATAACTCCATACAATCAAACTGA  943

seq1  TTCCTAACTGACGTCTGCTAGAAATACAAATAATTGTAAGCTCTCTGTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTGACGTCTGCTAGAAATACAAATAATTGTAAGCTCTCTGTGA  993

seq1  TTCTGTGATTTGGGAATTC  1015
      |||||||||||||||||||
seq2  TTCTGTGATTTGGGAATTC  1012