BAC Information

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BAC

Clone NameB6Ng01-068H13
Chromosome2 (Build37)
Map Location 154,258,457 - 154,350,509
singlet/doubletdoublet
Overlap geneCbfa2t2
Upstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneApba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H13.bB6Ng01-068H13.g
ACCDH887049DH887050
length1,087289
definitionDH887049|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H13, 5' end.DH887050|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,349,406 - 154,350,509)(154,258,457 - 154,258,745)
sequence
gaattctgcagcacagccaaaaccaccaatgcactcaggccatcctttgt
ttccccatccagtccattataattcaactgcaaggacacagccataagat
ggaggatccagaaagctggttagcagaaatgtacaattcttcagtgtggc
aagtctagagaagtcctgtgtcccagaccgtgtgttttgcatctcttcat
gtgtatcctttttaaacacataagcttgcttccctgagcctgtgagcagt
gtcagcaaaccttatggaaggaattatgggaagcatagtgatcgccaaca
ggtaagaacaggaatacacactgagtgaatactgaatcctgtaagttgtc
ctctgacctacatacacacatacatacaccccaattgtttttaaagtaaa
cataaaggagctggtgggaggaaatattctctccacaaacatcacacacc
cacatccactaaataagtgtagttgggcaaggtggtccatatcctttatt
ccagcacttgggagactgaagcaggaggctcgagtccagcttaaactcca
tagtaagagtctcaaaaaccaaaccaaaccaaataaatgccacagaacaa
agacataaaactcagtttaggtagaatcgaagctgctgttgtttctatgt
tctatgttccccctctatatttaccgttgctgagagaatctgtactccca
gggctgtgctgcctagagaccaactcagtcccagttttcctcaactctgt
attttcattaaaccgccgtttccaatagttgagttcttcacggtcagatt
cctgacagcgcctcagaactgccatggagcgcctagttttctctaccatt
tccataatgcaattcagtgcctgaaacagagagatggggaagcagaggtg
agatgagaatttaataaggacattaaaatcaaggatgggtaacaattgga
aggagggaaacagagctcacagattttacatcgtaggaataaagttacat
ttaaagtcattatatacttgttataattagatttcttaattttatgggtt
ttgtgtgcataataaatatatgcgtatttgtgtgtgc
cagagtgggaattaccatatggcaagtagtaagccagccagagtcataga
gggaagccctgatttaaccatgttaaggataacaaaatctggcctgttgg
tgtgctaggatcctaggccagggaggtgtaaaggccctgattgctctgga
ggaagctggctgcgtgctgggagggaaaggtcatggttcatggactcatg
ctggcaaagtgagaggtcaaacttccaaagtagccaaaaaaggaggagga
agaggaggaggagaagaggaaggaggaggaggaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154349406_154350509
seq2: B6Ng01-068H13.b_41_1127 (reverse)

seq1  GCACACACATATTAACGCATATATTTATTTATGCACACAAAACACTCATA  50
      ||||||||| ||  ||||||||||||| |||||||||||||  || ||| 
seq2  GCACACACAAAT--ACGCATATATTTA-TTATGCACACAAA--ACCCAT-  44

seq1  AAAATAAAGAAATCTAATTTAATAAACAAGGTATAATAATGACTTTTAAA  100
      ||||| |||||||||||||  || ||||| |||| |||||||| ||||||
seq2  AAAATTAAGAAATCTAATT--AT-AACAA-GTAT-ATAATGAC-TTTAAA  88

seq1  TGTAAACTTTATTCCTACGGTTGTAAAATCTGTGAGCTCTGTTTTCCCTC  150
      ||| |||||||||||||| | |||||||||||||||||||| ||||||||
seq2  TGT-AACTTTATTCCTAC-GATGTAAAATCTGTGAGCTCTG-TTTCCCTC  135

seq1  CTTCCAATTGTTACCCATCCTTGATTTTAATGTTCCTTATTAAATTTCTC  200
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CTTCCAATTGTTACCCATCCTTGATTTTAATG-TCCTTATTAAA-TTCTC  183

seq1  ATCTCACCTCTGCTTCCCCATCTCTCTGTTTCAGGCACTGAATTGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCTCTGCTTCCCCATCTCTCTGTTTCAGGCACTGAATTGCATTA  233

seq1  TGGAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGT  283

seq1  CAGGAATCTGACCGTGAAGAACTCAACTATTGGAAACGGCGGTTTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCTGACCGTGAAGAACTCAACTATTGGAAACGGCGGTTTAATGA  333

seq1  AAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACA  383

seq1  GCCCTGGGAGTACAGATTCTCTCAGCAACGGTAAATATAGAGGGGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGAGTACAGATTCTCTCAGCAACGGTAAATATAGAGGGGGAACA  433

seq1  TAGAACATAGAAACAACAGCAGCTTCGATTCTACCTAAACTGAGTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATAGAAACAACAGCAGCTTCGATTCTACCTAAACTGAGTTTTAT  483

seq1  GTCTTTGTTCTGTGGCATTTATTTGGTTTGGTTTGGTTTTTGAGACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTCTGTGGCATTTATTTGGTTTGGTTTGGTTTTTGAGACTCTT  533

seq1  ACTATGGAGTTTAAGCTGGACTCGAGCCTCCTGCTTCAGTCTCCCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAGTTTAAGCTGGACTCGAGCCTCCTGCTTCAGTCTCCCAAGTG  583

seq1  CTGGAATAAAGGATATGGACCACCTTGCCCAACTACACTTATTTAGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAAAGGATATGGACCACCTTGCCCAACTACACTTATTTAGTGGA  633

seq1  TGTGGGTGTGTGATGTTTGTGGAGAGAATATTTCCTCCCACCAGCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGTGTGATGTTTGTGGAGAGAATATTTCCTCCCACCAGCTCCTT  683

seq1  TATGTTTACTTTAAAAACAATTGGGGTGTATGTATGTGTGTATGTAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTACTTTAAAAACAATTGGGGTGTATGTATGTGTGTATGTAGGTC  733

seq1  AGAGGACAACTTACAGGATTCAGTATTCACTCAGTGTGTATTCCTGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAACTTACAGGATTCAGTATTCACTCAGTGTGTATTCCTGTTCT  783

seq1  TACCTGTTGGCGATCACTATGCTTCCCATAATTCCTTCCATAAGGTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTGGCGATCACTATGCTTCCCATAATTCCTTCCATAAGGTTTGC  833

seq1  TGACACTGCTCACAGGCTCAGGGAAGCAAGCTTATGTGTTTAAAAAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGCTCACAGGCTCAGGGAAGCAAGCTTATGTGTTTAAAAAGGAT  883

seq1  ACACATGAAGAGATGCAAAACACACGGTCTGGGACACAGGACTTCTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAAGAGATGCAAAACACACGGTCTGGGACACAGGACTTCTCTAG  933

seq1  ACTTGCCACACTGAAGAATTGTACATTTCTGCTAACCAGCTTTCTGGATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCACACTGAAGAATTGTACATTTCTGCTAACCAGCTTTCTGGATC  983

seq1  CTCCATCTTATGGCTGTGTCCTTGCAGTTGAATTATAATGGACTGGATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTATGGCTGTGTCCTTGCAGTTGAATTATAATGGACTGGATGG  1033

seq1  GGAAACAAAGGATGGCCTGAGTGCATTGGTGGTTTTGGCTGTGCTGCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAGGATGGCCTGAGTGCATTGGTGGTTTTGGCTGTGCTGCAGA  1083

seq1  ATTC  1104
      ||||
seq2  ATTC  1087

seq1: chr2_154258457_154258745
seq2: B6Ng01-068H13.g_75_363

seq1  CAGAGTGGGAATTACCATATGGCAAGTAGTAAGCCAGCCAGAGTCATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGAATTACCATATGGCAAGTAGTAAGCCAGCCAGAGTCATAGA  50

seq1  GGGAAGCCCTGATTTAACCATGTTAAGGATAACAAAATCTGGCCTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCCTGATTTAACCATGTTAAGGATAACAAAATCTGGCCTGTTGG  100

seq1  TGTGCTAGGATCCTAGGCCAGGGAGGTGTAAAGGCCCTGATTGCTCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGGATCCTAGGCCAGGGAGGTGTAAAGGCCCTGATTGCTCTGGA  150

seq1  GGAAGCTGGCTGCGTGCTGGGAGGGAAAGGTCATGGTTCATGGACTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGGCTGCGTGCTGGGAGGGAAAGGTCATGGTTCATGGACTCATG  200

seq1  CTGGCAAAGTGAGAGGTCAAACTTCCAAAGTAGCCAAAAAAGGAGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAGTGAGAGGTCAAACTTCCAAAGTAGCCAAAAAAGGAGGAGGA  250

seq1  AGAGGAGGAGGAGAAGAGGAAGGAGGAGGAGGAAGAAGA  289
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAGGAGAAGAGGAAGGAGGAGGAGGAAGAAGA  289