BAC Information

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BAC

Clone NameB6Ng01-068I17
Chromosome2 (Build37)
Map Location 101,601,040 - 101,737,854
singlet/doubletdoublet
Overlap gene2600010E01Rik, LOC100043302, Commd9
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6
Downstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I17.bB6Ng01-068I17.g
ACCDH887099DH887100
length1,112886
definitionDH887099|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I17, 5' end.DH887100|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,736,732 - 101,737,854)(101,601,040 - 101,601,929)
sequence
gaattcctccatggactagactatattttacatttaactattaaaaataa
ccctcaggtcatttactgaagtgtcaccaatattaatagtttgctgaaaa
taagtaagctctgaaatggcaaggtcctgtctgctaaaaacaaaaccgga
agatcagcttctccgtatgtatgcagagagaagcagcccagttctcccct
tcaagccaggagtgggagcccagcacttgggaagtggcagtagaaggacc
acaagttcaatgtcatccttggccaaaaagggagttcaaggccagtctca
gctacatgagactcttcctcaaataacagaaataagcaaagggatgaaca
gctttccattaaggcaattaagctctgggtgtggggttacaggctcttat
tttctttcatcatttatcatattacagtatgcactttcaagcacaacact
tacatttctagaacagtagtaacaagaactctgaaagtctgagggactct
caacacacacgcacttacatgtgctccacgatgatttttgtcagcaggtt
tttgaggttttggtggaaattttccggaaagagagccagaatcgcctcag
cagaggacaggtcacggaaggccaccagcctggtgaagtggtgcagagcc
tgcagcagctgtcagacagagagggcagccctgtagctgaagggtaggag
caggagggtgcatgcagaggggcaggggtggagctctgtacactcacccc
aggggcacactatcagtcacattaatgagttaactgcagtgtgggggcct
ccgtaacacatgctgacactcagtatgactctgttagttcactggtactt
ttagaagacagaggcagctgcctgatgtaggaagccatcagcttgtcaga
aacttgttagttgtgggcaaagggataatatcttttgccttctgtagaag
aaatgtgacctccacttaactttgtgatgctgtttccctggtaacctgaa
agaagtggaaatccagctaggtactaggcaccctgcatggcccatgacta
agaagactgtgtaacactaggtgcacttccttgagtgaggctgcaccttc
tgcagactctga
gaattcctccctgcatttcaccattgcctgtttttaaattacctattgag
gatatgtggcagagtctagcttcttagggcagccagagcccagactctga
ccctgactcaaatgacactgccatccccaggggaatctcgtagatgctgt
ccctcttatggctatactctgtgtcctttccccgctgaaacggaaaagag
aaactggcaaagagaatagaaagcctactaatcaactgttcgatttatat
aataatttactagaaacctgataagtgttagatatgataccaggtacaag
aaggagaggaatcagaactcaggcaaaggtcttctccgccctcaccacgc
attcaaaagctgacatttcttttgttttgttttgttttgttttgtttttc
tgttttttcgagacagggtttctctgtgtagcccctggctgttctggaac
ttactttgtagaccaggctggtctcgaactcagtagcccgcattcttctg
cctcccgagtgctgagattaaaggcgtgcaccatcacgccccgcttaaaa
gctgagatttcctaagaatgacactgggtatctgagttggagactagaac
tcgactaaaaaaaaaaaaaaaaaaaaaaaaaacaaacaggtggcatatac
ttgtaacccccagccagagctggggaaatggaaacagggaagaatcttgt
ggcttgctggtcagatctggtgaggccaagtcactgatactcagaaaaca
ggatggatggctcctaagaaatgaatgacacccaaggtccacatggatgc
atgcgcctgcatacatataagcacagaacacacacacacaaatacttatg
ccacggacccttatacagagacaccagaatatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101736732_101737854
seq2: B6Ng01-068I17.b_46_1157 (reverse)

seq1  TCAGAGTCTTGCAAGGAGGGTGCAGCCTCACTCAAGGAAGTGCACCTTAG  50
      |||||||| ||||  || |||||||||||||||||||||||||||| |||
seq2  TCAGAGTC-TGCA--GAAGGTGCAGCCTCACTCAAGGAAGTGCACC-TAG  46

seq1  TGTTTACACAGTCTTCTTAGTCCATTGGGCCAATGCAGGGTTGCCTAGTA  100
      || |||||||||||||||||||   |||||| |||||||| |||||||| 
seq2  TG-TTACACAGTCTTCTTAGTC--ATGGGCC-ATGCAGGG-TGCCTAGT-  90

seq1  ACCTAGCTGGATTTCCACTTCTTTCAGGTTACCAGGGAAACAGCATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTGGATTTCCACTTCTTTCAGGTTACCAGGGAAACAGCATCACA  140

seq1  AAGTTAAGTGGAGGTCACATTTCTTCTACAGAAGGCAAAAAGATATTATC  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTTAAGTGGAGGTCACATTTCTTCTACAGAAGGC-AAAAGATATTATC  189

seq1  CCTTTGCCCACAACTAACAAGTTTCTGACAAGCTGATGGCTTCCTACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCCACAACTAACAAGTTTCTGACAAGCTGATGGCTTCCTACATC  239

seq1  AGGCAGCTGCCTCTGTCTTCTAAAAGTACCAGTGAACTAACAGAGTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTGCCTCTGTCTTCTAAAAGTACCAGTGAACTAACAGAGTCATA  289

seq1  CTGAGTGTCAGCATGTGTTACGGAGGCCCCCACACTGCAGTTAACTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTCAGCATGTGTTACGGAGGCCCCCACACTGCAGTTAACTCATT  339

seq1  AATGTGACTGATAGTGTGCCCCTGGGGTGAGTGTACAGAGCTCCACCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTGATAGTGTGCCCCTGGGGTGAGTGTACAGAGCTCCACCCCT  389

seq1  GCCCCTCTGCATGCACCCTCCTGCTCCTACCCTTCAGCTACAGGGCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTGCATGCACCCTCCTGCTCCTACCCTTCAGCTACAGGGCTGCC  439

seq1  CTCTCTGTCTGACAGCTGCTGCAGGCTCTGCACCACTTCACCAGGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTGACAGCTGCTGCAGGCTCTGCACCACTTCACCAGGCTGGT  489

seq1  GGCCTTCCGTGACCTGTCCTCTGCTGAGGCGATTCTGGCTCTCTTTCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCGTGACCTGTCCTCTGCTGAGGCGATTCTGGCTCTCTTTCCGG  539

seq1  AAAATTTCCACCAAAACCTCAAAAACCTGCTGACAAAAATCATCGTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCACCAAAACCTCAAAAACCTGCTGACAAAAATCATCGTGGAG  589

seq1  CACATGTAAGTGCGTGTGTGTTGAGAGTCCCTCAGACTTTCAGAGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAAGTGCGTGTGTGTTGAGAGTCCCTCAGACTTTCAGAGTTCTT  639

seq1  GTTACTACTGTTCTAGAAATGTAAGTGTTGTGCTTGAAAGTGCATACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACTGTTCTAGAAATGTAAGTGTTGTGCTTGAAAGTGCATACTGT  689

seq1  AATATGATAAATGATGAAAGAAAATAAGAGCCTGTAACCCCACACCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATAAATGATGAAAGAAAATAAGAGCCTGTAACCCCACACCCAGA  739

seq1  GCTTAATTGCCTTAATGGAAAGCTGTTCATCCCTTTGCTTATTTCTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTGCCTTAATGGAAAGCTGTTCATCCCTTTGCTTATTTCTGTTA  789

seq1  TTTGAGGAAGAGTCTCATGTAGCTGAGACTGGCCTTGAACTCCCTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAGAGTCTCATGTAGCTGAGACTGGCCTTGAACTCCCTTTTTG  839

seq1  GCCAAGGATGACATTGAACTTGTGGTCCTTCTACTGCCACTTCCCAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGATGACATTGAACTTGTGGTCCTTCTACTGCCACTTCCCAAGTG  889

seq1  CTGGGCTCCCACTCCTGGCTTGAAGGGGAGAACTGGGCTGCTTCTCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCCCACTCCTGGCTTGAAGGGGAGAACTGGGCTGCTTCTCTCTG  939

seq1  CATACATACGGAGAAGCTGATCTTCCGGTTTTGTTTTTAGCAGACAGGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACGGAGAAGCTGATCTTCCGGTTTTGTTTTTAGCAGACAGGAC  989

seq1  CTTGCCATTTCAGAGCTTACTTATTTTCAGCAAACTATTAATATTGGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTTCAGAGCTTACTTATTTTCAGCAAACTATTAATATTGGTGA  1039

seq1  CACTTCAGTAAATGACCTGAGGGTTATTTTTAATAGTTAAATGTAAAATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTAAATGACCTGAGGGTTATTTTTAATAGTTAAATGTAAAATA  1089

seq1  TAGTCTAGTCCATGGAGGAATTC  1123
      |||||||||||||||||||||||
seq2  TAGTCTAGTCCATGGAGGAATTC  1112

seq1: chr2_101601040_101601929
seq2: B6Ng01-068I17.g_67_952

seq1  GAATTCCTCCCTGCATTTCACCATTGCCTGTTTTTAAATTACCTATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTGCATTTCACCATTGCCTGTTTTTAAATTACCTATTGAG  50

seq1  GATATGTGGCAGAGTCTAGCTTCTTAGGGCAGCCAGAGCCCAGACTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGGCAGAGTCTAGCTTCTTAGGGCAGCCAGAGCCCAGACTCTGA  100

seq1  CCCTGACTCAAATGACACTGCCATCCCCAGGGGAATCTCGTAGATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCAAATGACACTGCCATCCCCAGGGGAATCTCGTAGATGCTGT  150

seq1  CCCTCTTATGGCTATACTCTGTGTCCTTTCCCCGCTGAAACGGAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTATGGCTATACTCTGTGTCCTTTCCCCGCTGAAACGGAAAAGAG  200

seq1  AAACTGGCAAAGAGAATAGAAAGCCTACTAATCAACTGTTCGATTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCAAAGAGAATAGAAAGCCTACTAATCAACTGTTCGATTTATAT  250

seq1  AATAATTTACTAGAAACCTGATAAGTGTTAGATATGATACCAGGTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTACTAGAAACCTGATAAGTGTTAGATATGATACCAGGTACAAG  300

seq1  AAGGAGAGGAATCAGAACTCAGGCAAAGGTCTTCTCCGCCCTCACCACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGAATCAGAACTCAGGCAAAGGTCTTCTCCGCCCTCACCACGC  350

seq1  ATTCAAAAGCTGACATTTCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGCTGACATTTCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTC  400

seq1  TGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCCTGGCTGTTCTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCCTGGCTGTTCTGGAAC  450

seq1  TTACTTTGTAGACCAGGCTGGTCTCGAACTCAGTAGCCCGCATTCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGTAGACCAGGCTGGTCTCGAACTCAGTAGCCCGCATTCTTCTG  500

seq1  CCTCCCGAGTGCTGAGATTAAAGGCGTGCACCATCACGCCCCGCTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGAGTGCTGAGATTAAAGGCGTGCACCATCACGCCCCGCTTAAAA  550

seq1  GCTGAGATTTCCTAAGAATGACACTGGGTACCTGAGTTGGAGACTAGAAC  600
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTGAGATTTCCTAAGAATGACACTGGGTATCTGAGTTGGAGACTAGAAC  600

seq1  TCGACTAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAGGTGGCATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAGGTGGCATATAC  650

seq1  TTGTAA-CCCCAGCCAGAGCTGGGGAAATGGAAACAGGGAAGAATCTTGT  699
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACCCCCAGCCAGAGCTGGGGAAATGGAAACAGGGAAGAATCTTGT  700

seq1  GGCTTGCTGGTCAGATCTGGTGAGGCCAAGTCACTGATACTCAGAAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTGGTCAGATCTGGTGAGGCCAAGTCACTGATACTCAGAAAACA  750

seq1  GGATGGATGGCTCCTAAGAAATGAAATGACACCCAAGGTCCACATGGATG  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGATGGATGGCTCCTAAGAAATG-AATGACACCCAAGGTCCACATGGATG  799

seq1  CATGCGCCTGCATACATATAAGCACAGACACACACACACACAAATACATA  849
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CATGCGCCTGCATACATATAAGCACAGA-ACACACACACACAAATACTTA  848

seq1  TGCACACAGACACATATACAGAGACACACAGATATATAGAA  890
      ||| ||| ||| | ||||||||||||| |||| ||||||||
seq2  TGC-CACGGACCCTTATACAGAGACAC-CAGA-ATATAGAA  886