BAC Information

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BAC

Clone NameB6Ng01-068P21
Chromosome2 (Build37)9 (Build37)
Map Location 148,671,213 - 148,672,3929,341,822 - 9,341,905
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9
Downstream gene9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068P21.bB6Ng01-068P21.g
ACCDH887429DH887430
length1,161414
definitionDH887429|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P21, 5' end.DH887430|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,671,213 - 148,672,392)(9,341,822 - 9,341,905)
sequence
gaattcctccaacaaggccacacctacttcaaaaggtcactacctcctga
tctttctaattctagcaaacagttgccctctctggtggctaagcattcaa
atatatgaacctatgcgggcccttcttcttcaaaccaccacagtgggtga
agataaatagtgaagacatatccatggaaaggaatttaaagagtatgcta
tttaatgtagagagaatgaaggtctctttctggagtccagagtatagctc
atagagctttatcctgctagaaaacttggtgattaatatgagatttttct
gtggaattgggtagtctgaagttgtcaggctgatgtttgcctcctacccc
actgtggtctccttcccagacttgacctttctacacctgcattgtataaa
tggcctgctgatgagattcttttggtgccacgccctaacatagatcaggg
aggtgctggtgctttagatgggagcagtacttgcaaataccagggacagg
tgcacaggaagggtctcttcagtgtcagaggtgggcaactgtggtcaaag
gccaaagtggtcactacatagttttcaacagtcttattgaaacactgcca
ctctcatcagtctctgcagaatctatgtttgacaagaaacaaaggcaaaa
tggagatagttggcctagatacacaggcactccaaaatgtcagaacagtt
attcttctctggcttctatagggtgttggaccctggtacaggtgtctcag
gtaggacttagtgttttctacttcataagtgcttctcaaatatgtattat
gacgtgttccctaaagatttttagatatggttcccttttcaagagcagaa
gtttctaatgttgcccattactaagcggtgccaaggagatgctgctgctg
tttgtggagaccactccctgaacagtgagactacagtccatcctacatgt
accacttcagagacttggaaaaatatgtgaggatttgctcaggagtacag
accatctgtgtgagagatttgagacttgccttcatctacagtgtacatgg
gatgtctgtaggagggacaggtaaacattcaatcctgcatgtggtcatgt
cattgagagatggtgaatctgggacactcatgagcagaaagaatgcacca
gctatcttgct
tcccctgaggaatactgaatggcagagaagcacctgaaaaaatgttcaaa
atccttaatcatcagggaaatgcaatcaaaacaaccctgagattccacct
cagaccatacaggttttaaaaaagaaatagaaacaacaaagaaatcacaa
aaggagacaactctggaaatagaaaacctaggaaagagaacaaaagtcat
agacacaagcatcaccaacagaatacaaaagatagaagagagaatctcag
gggcaaaagatgcatagaaatattgatgcaacagtcaaagaaaatgtaaa
atacaaaaagcttctttatttttatttgttttgttttgtttttttgagac
agagtttctctgtatagccttggctgtcctgtaactcactctgtagacca
ggttaacctcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148671213_148672392
seq2: B6Ng01-068P21.b_46_1206

seq1  GAATTCCTCCAACAAGGCCACACCTACTTCAAAAGGTCACTACCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAACAAGGCCACACCTACTTCAAAAGGTCACTACCTCCTGA  50

seq1  TCTTTCTAATTCTAGCAAACAGTTGCCCTCTCTGGTGGCTAAGCATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATTCTAGCAAACAGTTGCCCTCTCTGGTGGCTAAGCATTCAA  100

seq1  ATATATGAACCTATGCGGGCCCTTCTTCTTCAAACCACCACAGTGGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAACCTATGCGGGCCCTTCTTCTTCAAACCACCACAGTGGGTGA  150

seq1  AGATAAATAGTGAAGACATATCCATGGAAAGGAATTTAAAGAGTATGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATAGTGAAGACATATCCATGGAAAGGAATTTAAAGAGTATGCTA  200

seq1  TTTAATGTAGAGAGAATGAAGGTCTCTTTCTGGAGTCCAGAGTATAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAGAGAGAATGAAGGTCTCTTTCTGGAGTCCAGAGTATAGCTC  250

seq1  ATAGAGCTTTATCCTGCTAGAAAACTTGGTGATTAATATGAGATTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTTTATCCTGCTAGAAAACTTGGTGATTAATATGAGATTTTTCT  300

seq1  GTGGAATTGGGTAGTCTGAAGTTGTCAGGCTGATGTTTGCCTCCTACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTGGGTAGTCTGAAGTTGTCAGGCTGATGTTTGCCTCCTACCCC  350

seq1  ACTGTGGTCTCCTTCCCAGACTTGACCTTTCTACACCTGCATTGTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTCTCCTTCCCAGACTTGACCTTTCTACACCTGCATTGTATAAA  400

seq1  TGGCCTGCTGATGAGATTCTTTTGGTGCCACGCCCTAACATAGATCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTGATGAGATTCTTTTGGTGCCACGCCCTAACATAGATCAGGG  450

seq1  AGGTGCTGGTGCTTTAGATGGGAGCAGTACTTGCAAATACCAGGGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGGTGCTTTAGATGGGAGCAGTACTTGCAAATACCAGGGACAGG  500

seq1  TGCACAGGAAGGGTCTCTTCAGTGTCAGAGGTGGGCAACTGTGGTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGAAGGGTCTCTTCAGTGTCAGAGGTGGGCAACTGTGGTCAAAG  550

seq1  GCCAAAGTGGTCACTACATAGTTTTCAACAGTCTTATTGAAACACTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTGGTCACTACATAGTTTTCAACAGTCTTATTGAAACACTGCCA  600

seq1  CTCTCATCAGTCTCTGCAGAATCTATGTTTGACAAGAAACAAAGGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCAGTCTCTGCAGAATCTATGTTTGACAAGAAACAAAGGCAAAA  650

seq1  TGGAGATAGTTGGCCTAGATACACAGGCACTCCAAAATGTCAGAACAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAGTTGGCCTAGATACACAGGCACTCCAAAATGTCAGAACAGTT  700

seq1  ATTCTTCTCTGGCTTCTATAGGGTGTTGGACCCTGGTACAGGTGTCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCTGGCTTCTATAGGGTGTTGGACCCTGGTACAGGTGTCTCAG  750

seq1  GTAGGACTTAGTGTTTTCTACTTCATAAGTGCTTCTCAAATATGTATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACTTAGTGTTTTCTACTTCATAAGTGCTTCTCAAATATGTATTAT  800

seq1  GACGTGTTCCCTAAAGATTTTTAGATATGGTTCCCTTTTCAAGAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTTCCCTAAAGATTTTTAGATATGGTTCCCTTTTCAAGAGCAGAA  850

seq1  GTTTCTAATGTTGCCCATTACTAAGCGGTGCCAAGGAGATGCTGCTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAATGTTGCCCATTACTAAGCGGTGCCAAGGAGATGCTGCTGCTG  900

seq1  TTTGTGGAGACCACTCCCTGAACAGTGAGACTACAGTCCATCCTACATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAGACCACTCCCTGAACAGTGAGACTACAGTCCATCCTACATGT  950

seq1  ACCAACTTCAGAGACTTGGAAAAAATATGTGAGGAATTTGCTCAAGAGTA  1000
      ||| ||||||||||||||| |||||||||||||| ||||||||| |||||
seq2  ACC-ACTTCAGAGACTTGG-AAAAATATGTGAGG-ATTTGCTCAGGAGTA  997

seq1  CAGACCATCTGTGTTGAGAGGAATTTGAGACTTGCCTTCATCTACAGTGT  1050
      ||||||||||||| ||||||  ||||||||||||||||||||||||||||
seq2  CAGACCATCTGTG-TGAGAG--ATTTGAGACTTGCCTTCATCTACAGTGT  1044

seq1  ACATGGGATGTCCTGGTAGGAGGGACAGGTAAACATTCATATCCCTGGCC  1100
      ||||||||||||   |||||||||||||||||||||||| || ||||  |
seq2  ACATGGGATGTC--TGTAGGAGGGACAGGTAAACATTCA-AT-CCTG--C  1088

seq1  ATGTGGGTCATGTCA-TGAGAGATGGTGGTATCTGGGACAACTCATGAGG  1149
      |||| |||||||||| ||||||||||| | ||||||||| ||||||||| 
seq2  ATGT-GGTCATGTCATTGAGAGATGGT-GAATCTGGGAC-ACTCATGAG-  1134

seq1  TCTAGAAGGATGGCCACCAAGCTATCTTGCT  1180
         |||| ||  | |||| ||||||||||||
seq2  --CAGAAAGAATG-CACC-AGCTATCTTGCT  1161

seq1: chr9_9341822_9341905
seq2: B6Ng01-068P21.g_402_487 (reverse)

seq1  GTTTGAGG-CCAGCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTA  49
      ||||||||   | |||||||||| |||||||| |||||||||||||||||
seq2  GTTTGAGGTTAACCTGGTCTACAGAGTGAGTTACAGGACAGCCAAGGCTA  50

seq1  CACAGAGAAACCCTGTCTC-AAAAAACAAAACAAAA  84
       |||||||||| ||||||| ||||||||||||||||
seq2  TACAGAGAAACTCTGTCTCAAAAAAACAAAACAAAA  86