BAC Information

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BAC

Clone NameB6Ng01-069B20
Chromosome2 (Build37)
Map Location 126,400,967 - 126,565,288
singlet/doubletdoublet
Overlap geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714
Upstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneUsp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069B20.bB6Ng01-069B20.g
ACCDH887516DH887517
length1,171944
definitionDH887516|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B20, 5' end.DH887517|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,400,967 - 126,402,166)(126,564,341 - 126,565,288)
sequence
gaattccctatgtatatatggaatatatataggtttaggttcctagcctc
ctgcctttgggtttggttgttctgagataaggccctggtgttttttaaaa
gctgtgtagggttaagagcagcagcccagaccttcaagagaactgagatg
ttcaggtcaacatgcatgttctcctcacaggttgaccagaaagatgtgcc
tcatttctctctcctctctcagttgttttataacctggaggccctgaaga
gtctggtctctcggtagtcagtcattccaagtataacggtggattagggc
cctctatcggcctgtgcagtcagtgttaccttgtctctgactaggaaaca
gccacaggagagctctgagatgacctttgtccccagggactgaccaataa
agtaatgaaaacagtagtccatatgctagacactgtgactctgaagggca
gatctgagcacactgcttgctagctgagtcgccctgagaagctatataca
ttccttaggcctcagtttcaacatcttgaaacagaaataaaaggaaaaga
ttgagcccagcgcctagtggaagctcagggttaatacagggaagacttgc
tgagttatttattcaagatccctgttgtgtaacaaccttggacataaagc
cttccatttcttatactctggttggagcataagacattcccaaagttcaa
gggccctccaacaacggcatcaaacccacactgtgcaactcggtccctga
cctccgggccttggcagtccagtaaggtagcctaaagctgtgtgtaaata
tttagatgtcaataaagcaaattttggaattcagtttgtcattcacagta
acagctgccttgcaagtgttcagtaggcacacgtcactggccccaccctg
agcagagcagatattccttccatcacggacaaccctacgagccacgctgc
tgtagctggaatgtagtgtcagccagtgtgactagcctagctgtgagatg
gaggacacacagcagctgcagcgctgctactgttgacctcaagagacttt
tagggaattgtttcgaccaaacttctcttaccatgtacatagcacactag
ctctttctttccttcaatggtcctcaggtcctgtcagctttctcacgtga
gcaactccttaaaagaaaaga
gaattcaattaaaatgaaggcatttacaataatataccttctctttataa
tgtcttatatttatactttaagaagacttatttattcaatttgtttaata
tttaatctgaaatattagataactttaaaaatgatgaagatactgacttt
cgacagctctaaagaaatcagcatcatccacttcaaatgttaatactgca
gggaaagcgactgctacagatccataatgaatactgtctaggcaagtttt
attactgtttcttcaaagagaacctaacaagaacctctaaatttttatct
gaatatcattcaatatctttaaataactatcattaacatttcaaacgcca
atgaaatggaactaaaatatgttttaaagccagaacactgacatttcacc
tctctgataagcaaaagtaggcaaaccactctccacagtgatgggctcca
ttttctacagtgatgggcctaccctccacagtgcaatgttttgtttgtaa
aagtctgcttctgtccggagcacgtcagagaactgttctcatcattactc
tgaacagtccagtatggtagctggctgctcacctagcctctgtaaccacc
acaagtaatgcagagaggacttaagctctgggtggtgcgcaggtgacaca
cagatgtgtaagagggaccgagcacttgcagacttggttattctcatgga
gtcctgagagccatctgaggcagacacttgagggcagccgtgccagtcaa
atcacagcaacgtcaccagctgagctcttccatctacctcggaacacaag
ctgttgctacaggttatgagaaatggccaccagcgagctttgaagtcttg
tagggagtctaatatagccagggcaacagaggtaattatataaaaggttt
tgttaaaataaagtgcctggggctagagagaccgttcgtggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126400967_126402166
seq2: B6Ng01-069B20.b_44_1214

seq1  GAATTCCCTATGTATATATGGAATATATATAGGTTTAGGTTCCTAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATGTATATATGGAATATATATAGGTTTAGGTTCCTAGCCTC  50

seq1  CTGCCTTTGGGTTTGGTTGTTCTGAGATAAGGCCCTGGTGTTTTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTGGGTTTGGTTGTTCTGAGATAAGGCCCTGGTGTTTTTTAAAA  100

seq1  GCTGTGTAGGGTTAAGAGCAGCAGCCCAGACCTTCAAGAGAACTGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGGGTTAAGAGCAGCAGCCCAGACCTTCAAGAGAACTGAGATG  150

seq1  TTCAGGTCAACATGCATGTTCTCCTCACAGGTTGACCAGAAAGATGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCAACATGCATGTTCTCCTCACAGGTTGACCAGAAAGATGTGCC  200

seq1  TCATTTCTCTCTCCTCTCTCAGTTGTTTTATAACCTGGAGGCCCTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCTCTCCTCTCTCAGTTGTTTTATAACCTGGAGGCCCTGAAGA  250

seq1  GTCTGGTCTCTCGGTAGTCAGTCATTCCAAGTATAACGGTGGATTAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTCTCGGTAGTCAGTCATTCCAAGTATAACGGTGGATTAGGGC  300

seq1  CCTCTATCGGCCTGTGCAGTCAGTGTTACCTTGTCTCTGACTAGGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCGGCCTGTGCAGTCAGTGTTACCTTGTCTCTGACTAGGAAACA  350

seq1  GCCACAGGAGAGCTCTGAGATGACCTTTGTCCCCAGGGACTGACCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGAGAGCTCTGAGATGACCTTTGTCCCCAGGGACTGACCAATAA  400

seq1  AGTAATGAAAACAGTAGTCCATATGCTAGACACTGTGACTCTGAAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAAAACAGTAGTCCATATGCTAGACACTGTGACTCTGAAGGGCA  450

seq1  GATCTGAGCACACTGCTTGCTAGCTGAGTCGCCCTGAGAAGCTATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGCACACTGCTTGCTAGCTGAGTCGCCCTGAGAAGCTATATACA  500

seq1  TTCCTTAGGCCTCAGTTTCAACATCTTGAAACAGAAATAAAAGGAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGGCCTCAGTTTCAACATCTTGAAACAGAAATAAAAGGAAAAGA  550

seq1  TTGAGCCCAGCGCCTAGTGGAAGCTCAGGGTTAATACAGGGAAGACTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCAGCGCCTAGTGGAAGCTCAGGGTTAATACAGGGAAGACTTGC  600

seq1  TGAGTTATTTATTCAAGATCCCTGTTGTGTAACAACCTTGGACATAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATTTATTCAAGATCCCTGTTGTGTAACAACCTTGGACATAAAGC  650

seq1  CTTCCATTTCTTATACTCTGGTTGGAGCATAAGACATTCCCAAAGTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTTCTTATACTCTGGTTGGAGCATAAGACATTCCCAAAGTTCAA  700

seq1  GGGCCCTCCAACAACGGCATCAAACCCACACTGTGCAACTCGGTCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTCCAACAACGGCATCAAACCCACACTGTGCAACTCGGTCCCTGA  750

seq1  CCTCCGGGCCTTGGCAGTCCAGTAAGGTAGCCTAAAGCTGTGTGTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGGCCTTGGCAGTCCAGTAAGGTAGCCTAAAGCTGTGTGTAAATA  800

seq1  TTTAGATGTCAATAAAGCAAATTTTGGAATTCAGTTTGTCATTCACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGTCAATAAAGCAAATTTTGGAATTCAGTTTGTCATTCACAGTA  850

seq1  ACAGCTGCCTTGCAAGTGTTCAGTAGGCACACGTCACTGGCCCCACCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCTTGCAAGTGTTCAGTAGGCACACGTCACTGGCCCCACCCTG  900

seq1  AGCAGAGCAGATATTCCTTCCATCACGGACAACCCTACGGAGCCACGCTG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCAGAGCAGATATTCCTTCCATCACGGACAACCCTAC-GAGCCACGCTG  949

seq1  CTGTAGGCTGGAATGTTAGTGTCAGGCCAGTGTGAACTAGCCTAGCTGTG  1000
      ||||| ||||||||| |||||||| ||||||||| |||||||||||||| 
seq2  CTGTA-GCTGGAATG-TAGTGTCA-GCCAGTGTG-ACTAGCCTAGCTGT-  994

seq1  GAGATGGAGGACAACCACAAGCAAGCTGGCAGCGCTGCTACTGTTGACCT  1050
      |||||||||||||  ||| ||| |||| ||||||||||||||||||||||
seq2  GAGATGGAGGACA--CAC-AGC-AGCT-GCAGCGCTGCTACTGTTGACCT  1039

seq1  CAGAGAGGACTTTTAGGGGAATTTGTTTTCGACCAAACTTCTCCTTACAC  1100
      || ||| |||||||| |||||||   |||||||||||||||| ||||| |
seq2  CA-AGA-GACTTTTA-GGGAATT--GTTTCGACCAAACTTCT-CTTAC-C  1082

seq1  ATGTACATAAGCACACCTAGCTCTTTCCTTTCTCATCCATTGGTCCTCAG  1150
      |||||||| |||||| |||||||||||   | || | || ||||||||||
seq2  ATGTACAT-AGCACA-CTAGCTCTTTC---TTTCCTTCAATGGTCCTCAG  1127

seq1  GTCCTTGTCAGCTTTTCTACGTGAAGCAAACTCCTTTAAAAAGGAAAAGA  1200
      |||| ||||||||||   ||||| ||| ||||||||   ||| |||||||
seq2  GTCC-TGTCAGCTTTCTCACGTG-AGC-AACTCCTT---AAAAGAAAAGA  1171

seq1: chr2_126564341_126565288
seq2: B6Ng01-069B20.g_68_1011 (reverse)

seq1  TAACCACCGAACGGTCTCTCTAGCCCCAGGCACTTTATTTTTAACAAAAA  50
      |||||| |||||||||||||||||||||||||||||| ||||||| ||||
seq2  TAACCA-CGAACGGTCTCTCTAGCCCCAGGCACTTTA-TTTTAAC-AAAA  47

seq1  CCTTTTATAATAATTACCTCTGTTGCCCTGGCTATATTAGACTCCCTACA  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAT-ATAATTACCTCTGTTGCCCTGGCTATATTAGACTCCCTACA  96

seq1  AGACTTCAAAGCTCGCTGGTGGCCATTTCTCATAACCTGTAGCAACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAAGCTCGCTGGTGGCCATTTCTCATAACCTGTAGCAACAGCT  146

seq1  TGTGTTCCGAGGTAGATGGAAGAGCTCAGCTGGTGACGTTGCTGTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCGAGGTAGATGGAAGAGCTCAGCTGGTGACGTTGCTGTGATTT  196

seq1  GACTGGCACGGCTGCCCTCAAGTGTCTGCCTCAGATGGCTCTCAGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCACGGCTGCCCTCAAGTGTCTGCCTCAGATGGCTCTCAGGACTC  246

seq1  CATGAGAATAACCAAGTCTGCAAGTGCTCGGTCCCTCTTACACATCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAATAACCAAGTCTGCAAGTGCTCGGTCCCTCTTACACATCTGTG  296

seq1  TGTCACCTGCGCACCACCCAGAGCTTAAGTCCTCTCTGCATTACTTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTGCGCACCACCCAGAGCTTAAGTCCTCTCTGCATTACTTGTGG  346

seq1  TGGTTACAGAGGCTAGGTGAGCAGCCAGCTACCATACTGGACTGTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACAGAGGCTAGGTGAGCAGCCAGCTACCATACTGGACTGTTCAGA  396

seq1  GTAATGATGAGAACAGTTCTCTGACGTGCTCCGGACAGAAGCAGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATGAGAACAGTTCTCTGACGTGCTCCGGACAGAAGCAGACTTTT  446

seq1  ACAAACAAAACATTGCACTGTGGAGGGTAGGCCCATCACTGTAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAACATTGCACTGTGGAGGGTAGGCCCATCACTGTAGAAAATG  496

seq1  GAGCCCATCACTGTGGAGAGTGGTTTGCCTACTTTTGCTTATCAGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATCACTGTGGAGAGTGGTTTGCCTACTTTTGCTTATCAGAGAGG  546

seq1  TGAAATGTCAGTGTTCTGGCTTTAAAACATATTTTAGTTCCATTTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTCAGTGTTCTGGCTTTAAAACATATTTTAGTTCCATTTCATTG  596

seq1  GCGTTTGAAATGTTAATGATAGTTATTTAAAGATATTGAATGATATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGAAATGTTAATGATAGTTATTTAAAGATATTGAATGATATTCAG  646

seq1  ATAAAAATTTAGAGGTTCTTGTTAGGTTCTCTTTGAAGAAACAGTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTAGAGGTTCTTGTTAGGTTCTCTTTGAAGAAACAGTAATAA  696

seq1  AACTTGCCTAGACAGTATTCATTATGGATCTGTAGCAGTCGCTTTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCTAGACAGTATTCATTATGGATCTGTAGCAGTCGCTTTCCCTG  746

seq1  CAGTATTAACATTTGAAGTGGATGATGCTGATTTCTTTAGAGCTGTCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAACATTTGAAGTGGATGATGCTGATTTCTTTAGAGCTGTCGAA  796

seq1  AGTCAGTATCTTCATCATTTTTAAAGTTATCTAATATTTCAGATTAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATCTTCATCATTTTTAAAGTTATCTAATATTTCAGATTAAATA  846

seq1  TTAAACAAATTGAATAAATAAGTCTTCTTAAAGTATAAATATAAGACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATTGAATAAATAAGTCTTCTTAAAGTATAAATATAAGACATT  896

seq1  ATAAAGAGAAGGTATATTATTGTAAATGCCTTCATTTTAATTGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGAAGGTATATTATTGTAAATGCCTTCATTTTAATTGAATTC  944