BAC Information

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BAC

Clone NameB6Ng01-069E02
Chromosome7 (Build37)2 (Build37)
Map Location 12,673,932 - 12,675,07443,922,257 - 43,922,311
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075
Downstream geneLOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069E02.bB6Ng01-069E02.g
ACCDH887620DH887621
length1,145703
definitionDH887620|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E02, 5' end.DH887621|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,673,932 - 12,675,074)(43,922,257 - 43,922,311)
sequence
gaattcaattaaagcaaaactcacagcaacctccttcaggatagttcatg
ctaaaagcatttcatgattctatacccaatgtgtataaattattctatac
acatacagtggaattctctacaacatgaacgtcaacaaagagggaaacac
acaacatggatcaatcatttcaaacccttaacctgaaaaagttgatgcac
atagacctatgacgtcttccttttcctataccccatgtgaacatgacaac
actaaggtattattgaacagaaggcttttgttttacatatgaaggtgaga
acatacagaggcatatgtaagagtccatgggaccaaaagaatgtagtaca
ttgaccttgctgatacaatgtaccaggccatggaggagggagttctgtgg
aagcaaacaagaggaaggatagacagaggaaagagggccaaggaaattaa
acaaacaaagaatgaaacaaaaacaaaaaacaaaactaaacaaaaaaaac
aaaaaataaataaataataaaaacaaaaaatcaaagtaccatgagaagca
ccaatagaaggagaaccctgacaaaaatcaagagcccaacagtaggtaga
caaagttcatgaatttcataccaaagagatccagggggaagggaagcaaa
gattagggtgctggggcaagaagtcctgagaggaaccagaattctgtaaa
atgtacttgcaattctgtgagattacagaagttagcatcctctctgatat
gttaataggcccttcagccacttatcctgtgtgtctttgagacaaaacac
tcttgagatgttgaaactctctgagaggctgggtgatagggaaatgcctt
tcaggccaaggccatgcaacttgcttatactttttttttgtttgtttgtt
tgtttactaatgaacacctatatctcagcatgcaatctgcattacatttt
gtgcctccaagggctatcagaaagcctcctcatcctgattctatattact
tcttgggagttggctaacacacttatggtggccattttgtttttgttttc
tgacaggtgacttagggccaaagggttacagttattccgactcttataca
gatgatgtcactctgtttctgagttgaactggaatgaaccaatca
gaattctcacccgaggaatacggaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaccaatcctgagat
tccatctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttgttg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctct
gaaaattagacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacatatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagct
atccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactacttagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggagctggagggcatcatcctgagtgaggtaacacaatcacaaa
agtactcaaatggtatgtactcactgatatgtggatatagcctagatact
tagtatacccgagatataagaggcaattttgtaaaacacatgaaacccaa
gaagaacgaagaccagagtgtggacactttgccccttcttagaattggaa
aca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12673932_12675074
seq2: B6Ng01-069E02.b_49_1193

seq1  GAATTCAATTAAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATG  50

seq1  CTAAAAGCATTTCATGATTCTATACCCAATGTGTATAAATTATTCTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCATTTCATGATTCTATACCCAATGTGTATAAATTATTCTATAC  100

seq1  ACATACAGTGGAATTCTCTACAACATGAACGTCAACAAAGAGGGAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGTGGAATTCTCTACAACATGAACGTCAACAAAGAGGGAAACAC  150

seq1  ACAACATGGATCAATCATTTCAAACCCTTAACCTGAAAAAGTTGATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGGATCAATCATTTCAAACCCTTAACCTGAAAAAGTTGATGCAC  200

seq1  ATAGACCTATGACGTCTTCCTTTTCCTATACCCCATGTGAACATGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTATGACGTCTTCCTTTTCCTATACCCCATGTGAACATGACAAC  250

seq1  ACTAAGGTATTATTGAACAGAAGGCTTTTGTTTTACATATGAAGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTATTATTGAACAGAAGGCTTTTGTTTTACATATGAAGGTGAGA  300

seq1  ACATACAGAGGCATATGTAAGAGTCCATGGGACCAAAAGAATGTAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAGGCATATGTAAGAGTCCATGGGACCAAAAGAATGTAGTACA  350

seq1  TTGACCTTGCTGATACAATGTACCAGGCCATGGAGGAGGGAGTTCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGCTGATACAATGTACCAGGCCATGGAGGAGGGAGTTCTGTGG  400

seq1  AAGCAAACAAGAGGAAGGATAGACAGAGGAAAGAGGGCCAAGGAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGAGGAAGGATAGACAGAGGAAAGAGGGCCAAGGAAATTAA  450

seq1  ACAAACAAAGAATGAAACAAAAACAAAAAACAAAACTAAACAAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGAATGAAACAAAAACAAAAAACAAAACTAAACAAAAAAAAC  500

seq1  AAAAAATAAATAAATAATAAAAACAAAAAATCAAAGTACCATGAGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATAAATAATAAAAACAAAAAATCAAAGTACCATGAGAAGCA  550

seq1  CCAATAGAAGGAGAACCCTGACAAAAATCAAGAGCCCAACAGTAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGAAGGAGAACCCTGACAAAAATCAAGAGCCCAACAGTAGGTAGA  600

seq1  CAAAGTTCATGAATTTCATACCAAAGAGATCCAGGGGGAAGGGAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCATGAATTTCATACCAAAGAGATCCAGGGGGAAGGGAAGCAAA  650

seq1  GATTAGGGTGCTGGGGCAAGAAGTCCTGAGAGGAACCAGAATTCTGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGTGCTGGGGCAAGAAGTCCTGAGAGGAACCAGAATTCTGTAAA  700

seq1  ATGTACTTGCAATTCTGTGAGATTACAGAAGTTAGCATCCTCTCTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGCAATTCTGTGAGATTACAGAAGTTAGCATCCTCTCTGATAT  750

seq1  GTTAATAGGCCCTTCAGCCACTTATCCTGTGTGTCTTTGAGACAAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGGCCCTTCAGCCACTTATCCTGTGTGTCTTTGAGACAAAACAC  800

seq1  TCTTGAGATGTTGAAACTCTCTGAGAGGCTGGGTGATAGGGAAATGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGATGTTGAAACTCTCTGAGAGGCTGGGTGATAGGGAAATGCCTT  850

seq1  TCAGGCCAAGGCCATGCAACTTGCTTATACTTTTTTTTTGTTTGTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAAGGCCATGCAACTTGCTTATACTTTTTTTTTGTTTGTTTGTT  900

seq1  TGTTTACTAATGAACACCTATATCTCAGCATGCCATTCTGCCATACATTT  950
      |||||||||||||||||||||||||||||||| || |||||  |||||||
seq2  TGTTTACTAATGAACACCTATATCTCAGCATG-CAATCTGCATTACATTT  949

seq1  TGTG-CTCCAAGGGCTATCAGAAAAGCT-CTCATCCTGATTCCTAATTAC  998
      |||| |||||||||||||||||||  || |||||||||||||   |||||
seq2  TGTGCCTCCAAGGGCTATCAGAAAGCCTCCTCATCCTGATTCTATATTAC  999

seq1  TTCTT-GGAGTTGGCT-ACACACTTAGTGT-GCCATTTTG-TTTTGTTTT  1044
      ||||| |||||||||| |||||||||  || ||||||||| |||||||||
seq2  TTCTTGGGAGTTGGCTAACACACTTATGGTGGCCATTTTGTTTTTGTTTT  1049

seq1  CTGACA-GTGACTTAGGGCCAAGGTGTTTACAAGTTATTTCAGACTCTTA  1093
      |||||| ||||||||||||||| | | |||| ||||| ||| ||||||||
seq2  CTGACAGGTGACTTAGGGCCAAAG-GGTTAC-AGTTA-TTCCGACTCTTA  1096

seq1  TAGAGATGATGTCATCCTGTTTCTAGAGTTGAACTGAAAATGACCAATCA  1143
      || |||||||||||  |||||||| ||||||||||| ||   ||||||||
seq2  TACAGATGATGTCACTCTGTTTCT-GAGTTGAACTGGAATGAACCAATCA  1145

seq1: chr2_43922257_43922311
seq2: B6Ng01-069E02.g_717_771 (reverse)

seq1  TGTTTCCAATTCTAAGAAGGGGCAAAGTGTCGACACTTTGGTCTTCGTTC  50
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TGTTTCCAATTCTAAGAAGGGGCAAAGTGTCCACACTCTGGTCTTCGTTC  50

seq1  TTCTT  55
      |||||
seq2  TTCTT  55