BAC Information

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BAC

Clone NameB6Ng01-070C06
Chromosome2 (Build37)
Map Location 123,143,690 - 123,288,236
singlet/doubletdoublet
Overlap genenone
Upstream geneDuox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C06.bB6Ng01-070C06.g
ACCDH888231DH888232
length1,274497
definitionDH888231|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C06, 5' end.DH888232|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,286,961 - 123,288,236)(123,143,690 - 123,144,192)
sequence
gaattcatatatatatataaactaaaacatgtttcatgttttgcagtgtt
tagaaatatatatatatatatttctaaactctgcaaaatacaaagataca
atatgaattatataaggagctttacagatgtaaagaaatcaaacttgtca
cacataataagctataaacttcaagacatccccgaaaacatgtacctcaa
tctagataaatcatttctaccttgaatttggaactcatttgttttgatgg
ctgcaatttttattaatatataatcctcacgtcctaaaccctgcaacatc
caaaatctaaagctttttggacattgatatttaacaggtagaaaattcta
tgcctagcctactttgaaggtttgtagtaaaaaccctgatgtacaattca
cagcagagttcgcgtccttaaggagagaagtgtcctgctatttctgttct
gcttctgcatgtatttcctatccatgcctagattccttgatgtgcacaca
cccaaaaagagtaataaaatggcataggatgatactaaaccccaatatgg
gctctctacaatgccctgtgtatggctaaaatttgtatgcattaccttgg
tggttttggatttttttttctgttttatgatgtgagaatgttgtggaaaa
tattatacacctggcagctcttcctacaaaaaataatgataagaaaagta
gcaaagaattacatttgtcagtagcaaatgatggtgaacatcttctatgg
gactatgtttctactatggcaatgacctatgaattgaggaagaagaaaag
taacccacccatggtctttttaaaaagtgatgaaatgctaaatttttaat
aaaaactgggagtaaaaatgaagctctaggcaatacattggaagaggtat
ccatagggcatagaagccaccaagtgctaccgaaaagtgaaggtaactat
aaatatccaataggctgctcagataaatataataaaaaccatggtgtaaa
tgttagacatttgttgtgttaaaaatggatgcatgatgaagtaacagagg
agccacagacaagcttttccaggtcattgctgtcagaatttagaatgaca
gatgtctacaatggctgaaaaagtatcactattggcaccccaatagctat
tagcaagttgaagagagaaccctctctgaagcaatagtaactggtcttgt
ctggggctgttatccagcacatgagttgaataacgtgtgtagccagagcc
tgtgtcctacactctctggaaaga
actgctcatctgttttttttttccttacacttttcaaaggtatctttctc
agtcatgagaccatttcctcctttgtgtttgttcaaaaggatattatttt
atatttttatgtctatgaaatgagatggcaggagagggtggagatagctg
aaaagcaaatgggctgaactattagatgagattggatatattcagggtat
tatggctgtagatgggttgaattattagaaatgcaattaaaataggagtt
cactatcagttgaagcctttagctaacaggtcagatttttttctgaataa
tttttaaacaaagttatttcagaataattgttaatgcaaaatgttctaca
catgtgtgcatatgtgttctaaatcatttcaaaagtaagaagtttcaatc
caataaatatgatatatagatattccccatgtcaagagaaaggggagagg
gagacagaaatggagaaggtgagggaaagagagagagggggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123286961_123288236
seq2: B6Ng01-070C06.b_45_1318 (reverse)

seq1  TCTTT-CAAAGAGT-AAGGACACAGGCTTTGCCTGTCACAGCCTATTCAA  48
      ||||| || |||||  |||||||||||| || ||  ||||   ||||| |
seq2  TCTTTCCAGAGAGTGTAGGACACAGGCTCTGGCT-ACACACGTTATTC-A  48

seq1  ACTCATAGTTGCTTGTGATACAG-CCCAG-CAAGA-CAG-TACTATTGCC  94
      ||||||   |||| |  | |||| ||||| ||||| ||| ||||||||| 
seq2  ACTCAT--GTGCTGGATA-ACAGCCCCAGACAAGACCAGTTACTATTGCT  95

seq1  TCAGAGAAGGGTTTCTCCTCAACTTGCTAAATAGCTATCTGGGGTGCAAA  144
      ||||||| || | |||| |||||||||| ||||||||| |||||||| ||
seq2  TCAGAGAGGGTTCTCTCTTCAACTTGCT-AATAGCTAT-TGGGGTGCCAA  143

seq1  TAGTGATACTTTCTCAG-CATTGTAGACATCTGTCA-TCTAAATTCTGAC  192
      |||||||||||| |||| |||||||||||||||||| |||||||||||||
seq2  TAGTGATACTTTTTCAGCCATTGTAGACATCTGTCATTCTAAATTCTGAC  193

seq1  AGCAATGACCTGGGAAAGCTTGTCTGTGGCTCCTCTGTTACTTCATCATG  242
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCAATGACCTGGAAAAGCTTGTCTGTGGCTCCTCTGTTACTTCATCATG  243

seq1  CATCCATTTTTTAACACAACAAATGTCTAACATTTTAACACCATGGTTTT  292
      |||||| ||||||||||||||||||||||||||||  |||||||||||||
seq2  CATCCA-TTTTTAACACAACAAATGTCTAACATTT--ACACCATGGTTTT  290

seq1  TATTATATTTATCTGAGCAGCCTATTGGATATTTATAGTTACCTTCACTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTTATCTGAGCAGCCTATTGGATATTTATAGTTACCTTCACTT  340

seq1  TTCGGTAGCACTTGGTGGCTTCTATGCCCTATGGATACCTCTTCCAATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAGCACTTGGTGGCTTCTATGCCCTATGGATACCTCTTCCAATGT  390

seq1  ATTGCCTAGAGCTTCATTTTTACTCCCAGTTTTTATTAAAAATTTAGCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTAGAGCTTCATTTTTACTCCCAGTTTTTATTAAAAATTTAGCAT  440

seq1  TTCATCACTTTTTAAAAAGACCATGGGTGGGTTACTTTTCTTCTTCCTCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTTTTTAAAAAGACCATGGGTGGGTTACTTTTCTTCTTCCTCA  490

seq1  ATTCATAGGTCATTGCCATAGTAGAAACATAGTCCCATAGAAGATGTTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGGTCATTGCCATAGTAGAAACATAGTCCCATAGAAGATGTTCA  540

seq1  CCATCATTTGCTACTGACAAATGTAATTCTTTGCTACTTTTCTTATCATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTGCTACTGACAAATGTAATTCTTTGCTACTTTTCTTATCATT  590

seq1  ATTTTTTGTAGGAAGAGCTGCCAGGTGTATAATATTTTCCACAACATTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTAGGAAGAGCTGCCAGGTGTATAATATTTTCCACAACATTCT  640

seq1  CACATCATAAAACAGAAAAAAAAATCCAAAACCACCAAGGTAATGCATAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATAAAACAGAAAAAAAAATCCAAAACCACCAAGGTAATGCATAC  690

seq1  AAATTTTAGCCATACACAGGGCATTGTAGAGAGCCCATATTGGGGTTTAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGCCATACACAGGGCATTGTAGAGAGCCCATATTGGGGTTTAG  740

seq1  TATCATCCTATGCCATTTTATTACTCTTTTTGGGTGTGTGCACATCAAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCTATGCCATTTTATTACTCTTTTTGGGTGTGTGCACATCAAGG  790

seq1  AATCTAGGCATGGATAGGAAATACATGCAGAAGCAGAACAGAAATAGCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGCATGGATAGGAAATACATGCAGAAGCAGAACAGAAATAGCAG  840

seq1  GACACTTCTCTCCTTAAGGACGCGAACTCTGCTGTGAATTGTACATCAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTCTCCTTAAGGACGCGAACTCTGCTGTGAATTGTACATCAGG  890

seq1  GTTTTTACTACAAACCTTCAAAGTAGGCTAGGCATAGAATTTTCTACCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACTACAAACCTTCAAAGTAGGCTAGGCATAGAATTTTCTACCTG  940

seq1  TTAAATATCAATGTCCAAAAAGCTTTAGATTTTGGATGTTGCAGGGTTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCAATGTCCAAAAAGCTTTAGATTTTGGATGTTGCAGGGTTTA  990

seq1  GGACGTGAGGATTATATATTAATAAAAATTGCAGCCATCAAAACAAATGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGAGGATTATATATTAATAAAAATTGCAGCCATCAAAACAAATGA  1040

seq1  GTTCCAAATTCAAGGTAGAAATGATTTATCTAGATTGAGGTACATGTTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAATTCAAGGTAGAAATGATTTATCTAGATTGAGGTACATGTTTT  1090

seq1  CGGGGATGTCTTGAAGTTTATAGCTTATTATGTGTGACAAGTTTGATTTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGTCTTGAAGTTTATAGCTTATTATGTGTGACAAGTTTGATTTC  1140

seq1  TTTACATCTGTAAAGCTCCTTATATAATTCATATTGTATCTTTGTATTTT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTGTAAAGCTCCTTATATAATTCATATTGTATCTTTGTATTTT  1190

seq1  GCAGAGTTTAGAAATATATATATATATATTTCTAAACACTGCAAAACATG  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTTAGAAATATATATATATATATTTCTAAACACTGCAAAACATG  1240

seq1  AAACATGTTTTAGTTTATATATATATATGAATTC  1276
      ||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTTAGTTTATATATATATATGAATTC  1274

seq1: chr2_123143690_123144192
seq2: B6Ng01-070C06.g_66_568

seq1  GAATTCACTGCTCATCTGTTTTTTTTTTCCTTACACTTTTCAAAGGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTCATCTGTTTTTTTTTTCCTTACACTTTTCAAAGGTATC  50

seq1  TTTCTCAGTCATGAGACCATTTCCTCCTTTGTGTTTGTTCAAAAGGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTCATGAGACCATTTCCTCCTTTGTGTTTGTTCAAAAGGATAT  100

seq1  TATTTTATATTTTTATGTCTATGAAATGAGATGGCAGGAGAGGGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTTTTATGTCTATGAAATGAGATGGCAGGAGAGGGTGGAGA  150

seq1  TAGCTGAAAAGCAAATGGGCTGAACTATTAGATGAGATTGGATATATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAAAGCAAATGGGCTGAACTATTAGATGAGATTGGATATATTCA  200

seq1  GGGTATTATGGCTGTAGATGGGTTGAATTATTAGAAATGCAATTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTATGGCTGTAGATGGGTTGAATTATTAGAAATGCAATTAAAATA  250

seq1  GGAGTTCACTATCAGTTGAAGCCTTTAGCTAACAGGTCAGATTTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCACTATCAGTTGAAGCCTTTAGCTAACAGGTCAGATTTTTTTCT  300

seq1  GAATAATTTTTAAACAAAGTTATTTCAGAATAATTGTTAATGCAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTTAAACAAAGTTATTTCAGAATAATTGTTAATGCAAAATGT  350

seq1  TCTACACATGTGTGCATATGTGTTCTAAATCATTTCAAAAGTAAGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATGTGTGCATATGTGTTCTAAATCATTTCAAAAGTAAGAAGTT  400

seq1  TCAATCCAATAAATATGATATATAGATATTCCCCATGTCAAGAGAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAATAAATATGATATATAGATATTCCCCATGTCAAGAGAAAGGG  450

seq1  GAGAGGGAGACAGAAATGGAGAAGGTGAGGGAAAGAGAGAGAGGGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGACAGAAATGGAGAAGGTGAGGGAAAGAGAGAGAGGGGGAAG  500

seq1  GGA  503
      |||
seq2  GGA  503