BAC Information

Click to search

BAC

Clone NameB6Ng01-070J18
Chromosome2 (Build37)
Map Location 85,852,531 - 85,927,198
singlet/doubletdoublet
Overlap geneLOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037
Upstream geneP2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032
Downstream geneLOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J18.bB6Ng01-070J18.g
ACCDH888564DH888565
length7391,073
definitionDH888564|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J18, 5' end.DH888565|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,926,460 - 85,927,198)(85,852,531 - 85,853,235)
sequence
gaattctttgtattataggaggaaaactgaatgaattaaaataaagtata
aatcaaatacagacttgtgggtggaagcaacacacaaaaatgagaacaat
ctttttaagatgtgaaattcagaaaccatatataatttgaagagatttca
tccaagtgttttgaaacttttccttttactatgaatacatcaggaaagaa
attgtcttatcttggtaatcttctaaaggaaagtagcttacgctagtaaa
gccccgattgtttccttcacagcatctcaggagagttttgtgacagagat
ctggaaatggtagtgcagtctctacattctcatattggaaagtggatcag
tattcatttagtctgattgttctcttccatttgacacctgaaatgtgaat
ctgagttattaacatttttctaaataccaggtgagttcacaagcttaatt
ctaacaccattctttcaaaatgggctttggtctaccaattacaaattaga
tggttgatagagtaaatttatggtagcatagatgtatggatagatgaatg
ggtagatagatagacagaaacatagttagatagatgatagatggatgatg
ggtagatgatagatataactacatatagaaatatatcatatatatgaatg
tacaaacttatatctgcataactgcatgtgtgtgtgtgtgtgcgtgcgtg
cgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcctgttccctcaaatacttttaacatgaagttgtgttgtattttg
tcaaatttattttccagcattgaatgagatgttcatgtgatttttttatt
cctttgagtttgtgtatatagtggattatgttaatggttttcatatattg
aactaaccttgtattcctgggatgaaacctagttgattgtggcgaatgat
ggctttgatgtgttcttggattctgtttgagaaaattttattgaaaaaat
atccatcgatattcataagggaaattggtgtgaagttcactttctttgtt
gggtctttgtatggtttaagtatcagagtaattgtgccttcatagaatga
attcagtagtgttccttctgtttctattttatggaattgtttgaggcatg
ttgtttattagctcttctttgaatgtctggtagaattctgctaaaaagag
tctggccctgggccttttttggttgaggggggttaatgaattcttctatt
tcattaggggacatgggcctgtttagatagtttacctgctcttgatttaa
atttgatacctgttatctctctagaaaatcatccatttcatttttgattt
tcatttccagttttaatgagtaaaggcttttatgttggggtccagcctca
ataaagtatgtgagttctcaactggaagcagggatatctggaaggcacat
aataaataaatacagaatacattttgagtacaaactgacaggcaattttt
caggcttaaagttgctcttgcttctctcccactctctgctctctctctct
ctctctaggctgctattttacagcttgaggctgcacacactctgcattct
cttgcacactctgccttttgcctgtgtgctttttttttctcgacactcac
actcctacaaactctgtgtgttccccttttcacacacacatacacacaca
cacacacacacacacacacacacacacacacacatgttctcctccttcca
aacacacattcctccatgcatacctcacattctttcttcactcacaactc
ttttcttccttctcccctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85926460_85927198
seq2: B6Ng01-070J18.b_44_782 (reverse)

seq1  ACACACACACACACACACACACACACGCACGCACGCACGCACGCACGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACGCACGCACGCACGCACGCACGCAC  50

seq1  ACACACACACACATGCAGTTATGCAGATATAAGTTTGTACATTCATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATGCAGTTATGCAGATATAAGTTTGTACATTCATATAT  100

seq1  ATGATATATTTCTATATGTAGTTATATCTATCATCTACCCATCATCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATTTCTATATGTAGTTATATCTATCATCTACCCATCATCCATC  150

seq1  TATCATCTATCTAACTATGTTTCTGTCTATCTATCTACCCATTCATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTATCTAACTATGTTTCTGTCTATCTATCTACCCATTCATCTAT  200

seq1  CCATACATCTATGCTACCATAAATTTACTCTATCAACCATCTAATTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATCTATGCTACCATAAATTTACTCTATCAACCATCTAATTTGTA  250

seq1  ATTGGTAGACCAAAGCCCATTTTGAAAGAATGGTGTTAGAATTAAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGACCAAAGCCCATTTTGAAAGAATGGTGTTAGAATTAAGCTTG  300

seq1  TGAACTCACCTGGTATTTAGAAAAATGTTAATAACTCAGATTCACATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCACCTGGTATTTAGAAAAATGTTAATAACTCAGATTCACATTTC  350

seq1  AGGTGTCAAATGGAAGAGAACAATCAGACTAAATGAATACTGATCCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCAAATGGAAGAGAACAATCAGACTAAATGAATACTGATCCACTT  400

seq1  TCCAATATGAGAATGTAGAGACTGCACTACCATTTCCAGATCTCTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATGAGAATGTAGAGACTGCACTACCATTTCCAGATCTCTGTCAC  450

seq1  AAAACTCTCCTGAGATGCTGTGAAGGAAACAATCGGGGCTTTACTAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTCCTGAGATGCTGTGAAGGAAACAATCGGGGCTTTACTAGCGT  500

seq1  AAGCTACTTTCCTTTAGAAGATTACCAAGATAAGACAATTTCTTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTTTCCTTTAGAAGATTACCAAGATAAGACAATTTCTTTCCTGA  550

seq1  TGTATTCATAGTAAAAGGAAAAGTTTCAAAACACTTGGATGAAATCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATAGTAAAAGGAAAAGTTTCAAAACACTTGGATGAAATCTCTT  600

seq1  CAAATTATATATGGTTTCTGAATTTCACATCTTAAAAAGATTGTTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATATATGGTTTCTGAATTTCACATCTTAAAAAGATTGTTCTCAT  650

seq1  TTTTGTGTGTTGCTTCCACCCACAAGTCTGTATTTGATTTATACTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTTGCTTCCACCCACAAGTCTGTATTTGATTTATACTTTATT  700

seq1  TTAATTCATTCAGTTTTCCTCCTATAATACAAAGAATTC  739
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATTCAGTTTTCCTCCTATAATACAAAGAATTC  739

seq1: chr2_85852531_85853235
seq2: B6Ng01-070J18.g_421_1138

seq1  GTAGTGTTCCTTCTGTTTCTATTTTATGGAATTGTTTGAGGCATGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTCCTTCTGTTTCTATTTTATGGAATTGTTTGAGGCATGTTGTT  50

seq1  TATTAGCTCTTCTTTGAATGTCTGGTAGAATTCTGCTAAAAAGAGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTCTTCTTTGAATGTCTGGTAGAATTCTGCTAAAAAGAGTCTGG  100

seq1  CCCTGGGCCTTTTTTGGTTGAGGGGGGTTAATGAATTCTTCTATTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCCTTTTTTGGTTGAGGGGGGTTAATGAATTCTTCTATTTCATT  150

seq1  AGGGGACATGGGCCTGTTTAGATAGTTTACCTGCTCTTGATTTAAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACATGGGCCTGTTTAGATAGTTTACCTGCTCTTGATTTAAATTTG  200

seq1  ATACCTGTTATCTCTCTAGAAAATCATCCATTTCATTTTTGATTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTTATCTCTCTAGAAAATCATCCATTTCATTTTTGATTTTCATT  250

seq1  TCCAGTTTTAATGAGTAAAGGCTTTTATGTTGGGGTCCAGCCTCAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTAATGAGTAAAGGCTTTTATGTTGGGGTCCAGCCTCAATAAA  300

seq1  GTATGTGAGTTCTCAACTGGAAGCAGGGATATCTGGAAGGCACATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAGTTCTCAACTGGAAGCAGGGATATCTGGAAGGCACATAATAA  350

seq1  ATAAATACAGAATACATTTTGAGTACAAACTGACAGGCAATTTTTCAAGG  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAATACAGAATACATTTTGAGTACAAACTGACAGGCAATTTTTC-AGG  399

seq1  CTTAAAGTTGCTCTTGCTTCTCTCCCACTCTCTGCTCTCTCTCTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTGCTCTTGCTTCTCTCCCACTCTCTGCTCTCTCTCTCTCTCT  449

seq1  CTAGGCTGCTATTTTACAGCTTGAGGCTGCACACACTCTGCATTCTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGCTATTTTACAGCTTGAGGCTGCACACACTCTGCATTCTCTTG  499

seq1  CACACTCTGCCTTTTGCCTGTGTGCTTTTTTTTTCTCGAACACTCACACT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACACTCTGCCTTTTGCCTGTGTGCTTTTTTTTTCTCG-ACACTCACACT  548

seq1  CCTACAAACCTCTGTGTGTTCCCC-TTTCACACACACATACACACACACA  599
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CCTACAAA-CTCTGTGTGTTCCCCTTTTCACACACACATACACACACACA  597

seq1  CACACACACACACACACACACACACACACCACATGTACTCTCACTCACAA  649
      |||||||||||||||||||||||||||| ||||||| |||   ||  |||
seq2  CACACACACACACACACACACACACACA-CACATGTTCTCCTCCTTCCAA  646

seq1  ACACACATT-CTCCATGCATACCTCACATTCTTTCTTCACTCACACCTCT  698
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  ACACACATTCCTCCATGCATACCTCACATTCTTTCTTCACTCACAACTCT  696

seq1  ---------------CTCTCTC  705
                     |||||||
seq2  TTTCTTCCTTCTCCCCTCTCTC  718