BAC Information

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BAC

Clone NameB6Ng01-070M15
Chromosome2 (Build37)
Map Location 19,893,781 - 19,997,220
singlet/doubletdoublet
Overlap geneLOC100041302, LOC433406, LOC654360
Upstream genePip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
Downstream geneLOC667609, Etl4, Arhgap21, LOC433408, LOC675912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070M15.bB6Ng01-070M15.g
ACCDH888677DH888678
length1,1431,207
definitionDH888677|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M15, 5' end.DH888678|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,996,061 - 19,997,220)(19,893,781 - 19,895,011)
sequence
gaattcttactgtaagccgcagagctagctttctgtaaaatttaacctgc
agagtcttatgagagtacgaaagagatggtggacccaagtaagagatcac
tggttattcaaatttctgtaactccacatttgcataattttccacacaat
taaaatgtagattcctttaaaaatgagcttagtggccctcctctcagcaa
cacatccatatcctatgtaatgcactgctggacaattgcctacacacacc
aagcacttggtaagttcctgggaaacttagaattattggttctaggttcc
ctcccaattctaagaacacccaaactaccagaggctcaagtcctttctat
aaaatggggtagtgttgcatcaaacctcttgaacactacaaatcatctca
gccgacttataataaatatcaaattcagtgcaaatgtggtgaaaacagtg
gttcctgagggagtggggacaagaggtagcctgcacctgtttcatgcaga
tgcagtttcaagagcagcacttttgatctgtactcagttgactctgcaga
tttggtacccatggatatgaagggccagctaaatttgcatatatcagtag
gacccagaaccagttttcagaggaagcagcctgcagtgcttacaaaatta
tggagactatttagcccagatttcatatttttacagaggaagagacacag
attggaatgttaattaaagaaaatcacaccaacttaaagagtcaggtggt
agagaatttaggcttcggaacttcttgtctaggattcttttcaagtccct
acacagcatataaggagaaaattattcaaaaatctcaatatgatgacgca
aagcactccaagcaccatgaatgatgcatctgaaaggcaattagtaaaca
ctctgggtagcaagagctgtagactgaattttctatatagattgtacttt
gaataatgcatacttaatatatatatagttgtatacttataatacatatg
tatataaaatttaatattatttagctgtgtatttctggaaagcaaaggta
acagtgctttaggagctgagagcgggcagtggtgcaccacctttaagccc
agcactgggagcgagcaggcgaattctgattcagctcagtctg
gaattcaaatgttgtgcttgtggatcacacacctgtgctgagagacatgg
ctagtggtcacctcatggacacatggagcaatatatttgttagtgtattt
tagaatcactacatttcagggtatctctctaagtgacttattttttgtaa
gcctctgttgataaattatatttataaatgtcaatcctgacatctaaata
aatatcagtagtcaaattaccatctctcatatttagactagtgttctaag
aacaatttttacctggctgatatttgaatatttggttggtgtgactttgt
tcttgtatattcattttactttcagaagaagtagaaatgtccatgggaca
tacttaaagaagttatttccttttcttgacctatgtcaggaaagacttca
ggggcaaaaaatggtagtatttgggataaagctgggggatggatcatttt
ctgtagaaaagcagaagcaaagcatctcctagaaaaagaaagaaaacttg
agccaagagagaggccatgagacctgcctagtatgtttatgatggaggcc
atggacgaactggaaaggccaaccttggcagttagggctttaaaaacaga
gaggcctctgtagctgtggttccagctaataaccatgtagaccgccagat
ggccagctttcctggggcaggatcaattgctacttctatggtagcacttt
tgttttgcttttagtgttggcatgactccagaggaatatccaaaacaaga
ctagagggtgagacataagtaaccttaggatgagctgaactgggagattg
gtagatgacagatatcctttgaccagagaagtcatgaaggaggtagtgtt
agtggcaaagtggagttttcaagagcaagactgagattaactgagttggg
ggtcatagcacatggtgtcagagaaagtgagatataaaccatctctccta
tgacacacaagaagtatggatgggtgctatgatgaaagtatatgggtgtc
tatgctggcactgtgtacttttcatattacactattacatatgcattatt
gctcaataaacagaatccacaaaaggagaagttattttcatgacttttta
cagggatatgagaggtgtatcaatccaactctaatggatgatagacatta
ggcctgtacggagaagtagctgtctgcttgaaattctgcctgggcgaggt
tctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_19996061_19997220
seq2: B6Ng01-070M15.b_44_1186 (reverse)

seq1  CAGACTGAGCTCGAATTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCT  50
      ||||||||||| ||| |||||| || ||||| ||| |||  || ||||||
seq2  CAGACTGAGCT-GAA-TCAGAATTC-GCCTG-CTC-GCT--CCCAGTGCT  43

seq1  GGGCTTAAAGGTGTGTGCCACCACTGCCCGGCCTCTCCAGCTCCTTAAAG  100
      ||||||||||||| ||| ||||||||||||  |||| ||||||| |||||
seq2  GGGCTTAAAGGTG-GTG-CACCACTGCCCG--CTCT-CAGCTCC-TAAAG  87

seq1  CCACTGTTACCTTTGGCTTTCCAGATATACACAGCTAAATAATATTAAAT  150
       ||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  -CACTGTTACCTTT-GCTTTCCAGAAATACACAGCTAAATAATATTAAAT  135

seq1  TTTATATACATATGTATTATAAGTATACAACTATATATATAATTAAGTAT  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTATATACATATGTATTATAAGTATACAACTATATATAT-ATTAAGTAT  184

seq1  GCATTATTCAAAGTACAATCTATATAGAAAATTCAGTCTACAGCTCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTCAAAGTACAATCTATATAGAAAATTCAGTCTACAGCTCTTGC  234

seq1  TACCCAGAGTGTTTTACTAATTGCCTTTCAGATGCATCATTCATGGTGCT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAGTG-TTTACTAATTGCCTTTCAGATGCATCATTCATGGTGCT  283

seq1  TGGAGTGCTTTGCGTCATCATATTGAGATTTTTGAATAATTTTCTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCTTTGCGTCATCATATTGAGATTTTTGAATAATTTTCTCCTTA  333

seq1  TATGCTGTGTAGGGACTTGAAAAGAATCCTAGACAAGAAGTTCCGAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTGTAGGGACTTGAAAAGAATCCTAGACAAGAAGTTCCGAAGCC  383

seq1  TAAATTCTCTACCACCTGACTCTTTAAGTTGGTGTGATTTTCTTTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCTACCACCTGACTCTTTAAGTTGGTGTGATTTTCTTTAATTA  433

seq1  ACATTCCAATCTGTGTCTCTTCCTCTGTAAAAATATGAAATCTGGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAATCTGTGTCTCTTCCTCTGTAAAAATATGAAATCTGGGCTAA  483

seq1  ATAGTCTCCATAATTTTGTAAGCACTGCAGGCTGCTTCCTCTGAAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCATAATTTTGTAAGCACTGCAGGCTGCTTCCTCTGAAAACTG  533

seq1  GTTCTGGGTCCTACTGATATATGCAAATTTAGCTGGCCCTTCATATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGTCCTACTGATATATGCAAATTTAGCTGGCCCTTCATATCCAT  583

seq1  GGGTACCAAATCTGCAGAGTCAACTGAGTACAGATCAAAAGTGCTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCAAATCTGCAGAGTCAACTGAGTACAGATCAAAAGTGCTGCTCT  633

seq1  TGAAACTGCATCTGCATGAAACAGGTGCAGGCTACCTCTTGTCCCCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGCATCTGCATGAAACAGGTGCAGGCTACCTCTTGTCCCCACTC  683

seq1  CCTCAGGAACCACTGTTTTCACCACATTTGCACTGAATTTGATATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAACCACTGTTTTCACCACATTTGCACTGAATTTGATATTTATT  733

seq1  ATAAGTCGGCTGAGATGATTTGTAGTGTTCAAGAGGTTTGATGCAACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCGGCTGAGATGATTTGTAGTGTTCAAGAGGTTTGATGCAACACT  783

seq1  ACCCCATTTTATAGAAAGGACTTGAGCCTCTGGTAGTTTGGGTGTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTTTATAGAAAGGACTTGAGCCTCTGGTAGTTTGGGTGTTCTTA  833

seq1  GAATTGGGAGGGAACCTAGAACCAATAATTCTAAGTTTCCCAGGAACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGAGGGAACCTAGAACCAATAATTCTAAGTTTCCCAGGAACTTA  883

seq1  CCAAGTGCTTGGTGTGTGTAGGCAATTGTCCAGCAGTGCATTACATAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTTGGTGTGTGTAGGCAATTGTCCAGCAGTGCATTACATAGGA  933

seq1  TATGGATGTGTTGCTGAGAGGAGGGCCACTAAGCTCATTTTTAAAGGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTGTTGCTGAGAGGAGGGCCACTAAGCTCATTTTTAAAGGAAT  983

seq1  CTACATTTTAATTGTGTGGAAAATTATGCAAATGTGGAGTTACAGAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTAATTGTGTGGAAAATTATGCAAATGTGGAGTTACAGAAATT  1033

seq1  TGAATAACCAGTGATCTCTTACTTGGGTCCACCATCTCTTTCGTACTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACCAGTGATCTCTTACTTGGGTCCACCATCTCTTTCGTACTCTC  1083

seq1  ATAAGACTCTGCAGGTTAAATTTTACAGAAAGCTAGCTCTGCGGCTTACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTCTGCAGGTTAAATTTTACAGAAAGCTAGCTCTGCGGCTTACA  1133

seq1  GTAAGAATTC  1160
      ||||||||||
seq2  GTAAGAATTC  1143

seq1: chr2_19893781_19895011
seq2: B6Ng01-070M15.g_67_1273

seq1  GAATTCAAATGTTGTGCTTGTGGATCACACACCTGTGCTGAGAGACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTTGTGCTTGTGGATCACACACCTGTGCTGAGAGACATGG  50

seq1  CTAGTGGTCACCTCATGGACACATGGAGCAATATATTTGTTAGTGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTCACCTCATGGACACATGGAGCAATATATTTGTTAGTGTATTT  100

seq1  TAGAATCACTACATTTCAGGGTATCTCTCTAAGTGACTTATTTTTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCACTACATTTCAGGGTATCTCTCTAAGTGACTTATTTTTTGTAA  150

seq1  GCCTCTGTTGATAAATTATATTTATAAATGTCAATCCTGACATCTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTTGATAAATTATATTTATAAATGTCAATCCTGACATCTAAATA  200

seq1  AATATCAGTAGTCAAATTACCATCTCTCATATTTAGACTAGTGTTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTAGTCAAATTACCATCTCTCATATTTAGACTAGTGTTCTAAG  250

seq1  AACAATTTTTACCTGGCTGATATTTGAATATTTGGTTGGTGTGACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTTACCTGGCTGATATTTGAATATTTGGTTGGTGTGACTTTGT  300

seq1  TCTTGTATATTCATTTTACTTTCAGAAGAAGTAGAAATGTCCATGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATATTCATTTTACTTTCAGAAGAAGTAGAAATGTCCATGGGACA  350

seq1  TACTTAAAGAAGTTATTTCCTTTTCTTGACCTATGTCAGGAAAGACTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAGAAGTTATTTCCTTTTCTTGACCTATGTCAGGAAAGACTTCA  400

seq1  GGGGCAAAAAATGGTAGTATTTGGGATAAAGCTGGGGGATGGATCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAAAATGGTAGTATTTGGGATAAAGCTGGGGGATGGATCATTTT  450

seq1  CTGTAGAAAAGCAGAAGCAAAGCATCTCCTAGAAAAAGAAAGAAAACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAAGCAGAAGCAAAGCATCTCCTAGAAAAAGAAAGAAAACTTG  500

seq1  AGCCAAGAGAGAGGCCATGAGACCTGCCTAGTATGTTTATGATGGAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGAGAGGCCATGAGACCTGCCTAGTATGTTTATGATGGAGGCC  550

seq1  ATGGACGAACTGGAAAGGCCAACCTTGGCAGTTAGGGCTTTAAAAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGAACTGGAAAGGCCAACCTTGGCAGTTAGGGCTTTAAAAACAGA  600

seq1  GAGGCCTCTGTAGCTGTGGTTCCAGCTAATAACCATGTAGACCGCCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTGTAGCTGTGGTTCCAGCTAATAACCATGTAGACCGCCAGAT  650

seq1  GGCCAGCTTTCCTGGGGCAGGATCAATTGCTACTTCTATGGTAGCACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTTTCCTGGGGCAGGATCAATTGCTACTTCTATGGTAGCACTTT  700

seq1  TGTTTTGCTTTTAGTGTTGGCATGACTCCAGAGGAATATCCAAAACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTTTAGTGTTGGCATGACTCCAGAGGAATATCCAAAACAAGA  750

seq1  CTAGAGGGTGAGACATAAGTAACCTTAGGATGAGCTGAACTGGGAGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGGTGAGACATAAGTAACCTTAGGATGAGCTGAACTGGGAGATTG  800

seq1  GTAGATGACAGATATCCTTTGACCAGAGAAGTCATGAAGGAGGTAGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGACAGATATCCTTTGACCAGAGAAGTCATGAAGGAGGTAGTGTT  850

seq1  AGTGGCAAAGGTGGAGTTTTCAAGAGCAAGACTGAGATTAACTGAGTTGG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAA-GTGGAGTTTTCAAGAGCAAGACTGAGATTAACTGAGTTGG  899

seq1  GGGTCATAGGCACATGGTGTCAGAGAAAGTGAGATATAAACCATCTCTCC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATA-GCACATGGTGTCAGAGAAAGTGAGATATAAACCATCTCTCC  948

seq1  TATGACACCACAAAGAAGTATGGAATGGGTGCTATGATGAAAGTAATTAT  1000
      ||||||| ||| ||||||||||| |||||||||||||||||||||  |||
seq2  TATGACA-CAC-AAGAAGTATGG-ATGGGTGCTATGATGAAAGTA--TAT  993

seq1  GGGTGTCTATGCTGGCACTGTGTAACTTTTCATTAATACCACTATTAACA  1050
      ||||||||||||||||||||||| |||||||||  ||  ||||||||   
seq2  GGGTGTCTATGCTGGCACTGTGT-ACTTTTCAT--ATTACACTATTA--C  1038

seq1  ATATGCAATGTATTGCTCAAAATAAACAGAAT-CACAAAAGAGAAATTTA  1099
      |||||||   ||||||||  |||||||||||| ||||||||   || |||
seq2  ATATGCA--TTATTGCTC--AATAAACAGAATCCACAAAAGGAGAAGTTA  1084

seq1  TTTCAATGAACTGTTTTACAGGATTAT-AGAAGTGGTACAATCCAAACTC  1148
      |||  ||| ||| |||||||||  ||| ||| |||   |||||| |||||
seq2  TTTTCATG-ACT-TTTTACAGGGATATGAGAGGTGTATCAATCC-AACTC  1131

seq1  TATGGAATGAATGAGCCATTAGG-CTGTAGCAGAAGAAAGAAGCTGTCTG  1197
      ||  | ||||   || ||||||| ||||| | ||   ||| |||||||||
seq2  TAATGGATGA--TAGACATTAGGCCTGTA-CGGA--GAAGTAGCTGTCTG  1176

seq1  CTATGAAAATTCTTGCTTGTGGCAGGTTCTATAT  1231
      || || |||||| ||| || |  |||||||||||
seq2  CT-TG-AAATTC-TGCCTGGGCGAGGTTCTATAT  1207