BAC Information

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BAC

Clone NameB6Ng01-071E21
Chromosome2 (Build37)10 (Build37)
Map Location 16,954,118 - 16,955,301104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E21.bB6Ng01-071E21.g
ACCDH889041DH889042
length1,168949
definitionDH889041|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E21, 5' end.DH889042|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,954,118 - 16,955,301)(104,053,903 - 104,054,363)
sequence
gaattctttctttcttcccttcctttttttctgtctttctttctcttctc
tttctttctttcaatattcattttcttgtggcatgtagtgtggtgatact
agcacactcaaatagagtctttggggtgtggaaaaactgtgatttttatg
atgttcaactgtgttctactttttttaaaggtatgcctagatatattatg
ataacagcaccaattctttaaagactttgaaagtcttctctgtgatgtaa
gttccaagtgacagtccaatgaaactacaatgctactaaaaatggcaagg
agaagcaatccatcatctctggagtctatcacaatgaatgactaagaaaa
catgcttcctattccaacaggaaccttccctaaatacactgctctctgct
tcacaactgcccagtgcttacacttaccaataactgacagataagctccc
gatatataagatctttacacatatatgtgtaatatataagatatgatatc
ttcacaaattccaaataagtaaaacagaatcatcctcagttgtgtattaa
cggcgtcctatcactatgtatcactaattgggagaaaactcttcctgtct
agcttgtcttcacactatttgagaaaagaccactggaaaaatggaactag
atgtcccacttgatcatccagcataagcatctatggatgatgcaacagtc
ctagagatattcagtgcattcactgggtggcttggggaacaaccaagcca
atttcctagtgtttaagggagccctgtcgactttagctctgatgatggaa
ctatgagcatgtgctaagagtaaatgtttctatttaaaagtttctatctc
aaagactgaaacaaccttggcatcttttttgtcaagattgttaagaaaag
ggaaaatgaaacaacaacaaaaaacaggcaatgaggttgacaatggccag
gaaatgggaaaaatgtctgaatcaccaaatgtatacttttctgtcttttt
cctacaacagaacaaaagtaagattttataaaatcttactgcacaaacag
ttatttgggatgaaaacaatattgacacatacatatgtatatacttcctt
acggactaaagaggcatgaatgaggcctaaggtaacctcagccttaagaa
gatgcttttcttaatcgt
gaattctcacctgaggaatacctaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatctgggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagacagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggcacctca
gaaaattggacattgtactaccagaggatcttgcaatacctctcctgggc
atctatccagaagatgttccaaccggtaagaaggacacatgctccacaat
gttcctagcagccttatttgtaatagccagaagctggaaagaacccagat
gccgctcaacagaagaatggatatagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaactcctaggcaa
gtggatggacctgcagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacaggatatgttctcactgataagtggatattagcccagaaac
ttagattacccaagatacaaggtacaatttgcaaaacacatgaaactaaa
gaagaacaaagaccaaaatgtggacactttgtcccttcttagaattggga
acagaacaccaatggaaggagttacagagacaaagtttggagctgagaca
aaaggatggaccatctagagactgctatacctggggttccatcccataat
caacctccaaacactgacaccattgtacacactagcaagattttgctgaa
aggaccctgatatagctgtctcttgtgagactattcttgggcctggcaaa
cacagaagtgaatgctcacagttagctattggatggatcacagggcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16954118_16955301
seq2: B6Ng01-071E21.b_46_1213

seq1  GAATTCTTTCTTTCTTCCCTTCCTTTTTTTCTGTCTTTCTTTCTCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCTTCCCTTCCTTTTTTTCTGTCTTTCTTTCTCTTCTC  50

seq1  TTTCTTTCTTTCAATATTCATTTTCTTGTGGCATGTAGTGTGGTGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCAATATTCATTTTCTTGTGGCATGTAGTGTGGTGATACT  100

seq1  AGCACACTCAAATAGAGTCTTTGGGGTGTGGAAAAACTGTGATTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTCAAATAGAGTCTTTGGGGTGTGGAAAAACTGTGATTTTTATG  150

seq1  ATGTTCAACTGTGTTCTACTTTTTTTAAAGGTATGCCTAGATATATTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAACTGTGTTCTACTTTTTTTAAAGGTATGCCTAGATATATTATG  200

seq1  ATAACAGCACCAATTCTTTAAAGACTTTGAAAGTCTTCTCTGTGATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCACCAATTCTTTAAAGACTTTGAAAGTCTTCTCTGTGATGTAA  250

seq1  GTTCCAAGTGACAGTCCAATGAAACTACAATGCTACTAAAAATGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGTGACAGTCCAATGAAACTACAATGCTACTAAAAATGGCAAGG  300

seq1  AGAAGCAATCCATCATCTCTGGAGTCTATCACAATGAATGACTAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAATCCATCATCTCTGGAGTCTATCACAATGAATGACTAAGAAAA  350

seq1  CATGCTTCCTATTCCAACAGGAACCTTCCCTAAATACACTGCTCTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCTATTCCAACAGGAACCTTCCCTAAATACACTGCTCTCTGCT  400

seq1  TCACAACTGCCCAGTGCTTACACTTACCAATAACTGACAGATAAGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTGCCCAGTGCTTACACTTACCAATAACTGACAGATAAGCTCCC  450

seq1  GATATATAAGATCTTTACACATATATGTGTAATATATAAGATATGATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAAGATCTTTACACATATATGTGTAATATATAAGATATGATATC  500

seq1  TTCACAAATTCCAAATAAGTAAAACAGAATCATCCTCAGTTGTGTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATTCCAAATAAGTAAAACAGAATCATCCTCAGTTGTGTATTAA  550

seq1  CGGCGTCCTATCACTATGTATCACTAATTGGGAGAAAACTCTTCCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTCCTATCACTATGTATCACTAATTGGGAGAAAACTCTTCCTGTCT  600

seq1  AGCTTGTCTTCACACTATTTGAGAAAAGACCACTGGAAAAATGGAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTTCACACTATTTGAGAAAAGACCACTGGAAAAATGGAACTAG  650

seq1  ATGTCCCACTTGATCATCCAGCATAAGCATCTATGGATGATGCAACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCACTTGATCATCCAGCATAAGCATCTATGGATGATGCAACAGTC  700

seq1  CTAGAGATATTCAGTGCATTCACTGGGTGGCTTGGGGAACAACCAAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATATTCAGTGCATTCACTGGGTGGCTTGGGGAACAACCAAGCCA  750

seq1  ATTTCCTAGTGTTTAAGGGAGCCCTGTCGACTTTAGCTCTGATGATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGTGTTTAAGGGAGCCCTGTCGACTTTAGCTCTGATGATGGAA  800

seq1  CTATGAGCATGTGCTAAGAGTAAATGTTTCTATTTAAAAGTTTCTATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCATGTGCTAAGAGTAAATGTTTCTATTTAAAAGTTTCTATCTC  850

seq1  AAAGACTGAAACAACCTTGGCATCTTTTTTGTCAAGATTGTTAAGAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGAAACAACCTTGGCATCTTTTTTGTCAAGATTGTTAAGAAAAG  900

seq1  GGAAAAATGAAACAACAACAAAAAAACAGGCAATGAGGTTGACAATGGCC  950
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GG-AAAATGAAACAACAAC-AAAAAACAGGCAATGAGGTTGACAATGGCC  948

seq1  AGGAAATGGGAAAAATGTCTGAATCA-CAAATGTATAC-TTTCTGTCTTT  998
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  AGGAAATGGGAAAAATGTCTGAATCACCAAATGTATACTTTTCTGTCTTT  998

seq1  TCTCTACAACAGAACAAAAAGTAAAGATTTTATAAAATCTTACTGCACAA  1048
      |  |||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TTCCTACAACAGAAC-AAAAGT-AAGATTTTATAAAATCTTACTGCACAA  1046

seq1  ACAG-TATTT-GGATGAAAACAATATTGACACATACATATGTATATACTC  1096
      |||| ||||| |||||||||||||||||||||||||||||||||||||| 
seq2  ACAGTTATTTGGGATGAAAACAATATTGACACATACATATGTATATACTT  1096

seq1  CCTTACAGAACTAAAAAGAGGCATGAAATGGAAGGCCTACAGGGCACAAC  1146
      |||||| | |||  ||||||||||| ||||  ||||||| |||    |||
seq2  CCTTAC-GGACT--AAAGAGGCATG-AATG--AGGCCTA-AGG---TAAC  1136

seq1  CCCAGCCTTAAGGAAGAATTGCTTTTCTTTTTAATCGT  1184
      | ||||||||| |||||  ||||||||   ||||||||
seq2  CTCAGCCTTAA-GAAGA--TGCTTTTC---TTAATCGT  1168

seq1: chr10_104053903_104054363
seq2: B6Ng01-071E21.g_65_535 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||| ||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTATA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||| ||||||||| |||||||||||||||||||||| |||||||||
seq2  TCCATTCTTCTGTTGAGCGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      | |||||||||||||| ||| || ||||||||||||||||||||||||||
seq2  ACAAATAAGGCTGCTAGGAACATTGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  ||||||||||||| |||||||| |||||||||||  ||||||| |
seq2  TGGAACATCTTCTGGATAGATGCCCAGGAGAGGTATTGCAAGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||| |||||||||||||||| |  ||||||||| ||||||||||||
seq2  GTAGTACAATGTCCAATTTTCTGAGGTGCCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      | ||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CAGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTAG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471