BAC Information

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BAC

Clone NameB6Ng01-071F05
Chromosome2 (Build37)
Map Location 50,563,279 - 50,716,464
singlet/doubletdoublet
Overlap genenone
Upstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F05.bB6Ng01-071F05.g
ACCDH889057DH889058
length1,0061,152
definitionDH889057|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F05, 5' end.DH889058|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,715,946 - 50,716,464)(50,563,279 - 50,564,441)
sequence
gaattctggtactcatttcctttcttgctggcaagccttctggtttacac
aggactgcaaaggcaaggggacagtaacattctttctttgccacgttcaa
taccttggcagaatttcccccctctcaacatagtctgatgggagaagaat
aaaactcccccaaacagctggactttccaacatgaatcttgcttaaacct
caaccgcaaattatttaatgtgcagcttattgccaaaggatgcagccaag
ttcttctcaatattgctcaggaaagtaagatttagcacaatgccatctct
aacccatctctgtctttaagtagtactccaccatagtaatttatcttgga
tgggattacatgtattctaacatatttcatttggaagagacagggcagta
ttttagcagaaacttaaaaatagtaaagatttgtaatctgtaagcttcga
tttttttaaaaatctactttttttattggttattttctttattcacatta
caaatgttatctcttttcctggtttcccccctctgggaaatctcctatcc
catcctccttcccccttcttctatgagggtgttctcccactcacccactt
ctacctccccaccctcgatttccctacaatggggcatttatcaccttcat
aggaccaaagacctctcctcccattgatgcctgacaaggctcaagatcca
tgtatactcctttgttaatggcttagtccacaagagctctgggtggtctg
gttggttgatattgctgttcatcctatagagttgcaaatcccttcaactc
gttcagtcctttctctaactcctctatttgggaccctgtgctcagaccaa
tggttggctgcgagcatctgcttctgtatttgtaaagctctggcagggcc
tctcatgagtcagctatattaggcttctacaagcatgcacttttggcatc
cacaatagtgtctgggtttggtgactgtatatggaatggattcccagtgg
gcagtc
gaattctgtttactgtctgtggtagtcaggaatctttataccaatagaac
cagccacttagcattaaaatcacagcatcggaatcatagctgaggcggag
aaccaggtatgtacagttcttgagggcaggtacttcagcagttggaatat
tcccatggtaactatctgtcactggagaggccaacccagtagtagcccct
ccatgagactgagcacttcagcagcctgaatatggcagcaagaacctcaa
agattcttggagaactactggtccttagtccatatcagtaaaggaatcaa
cagcagcaacagggaaggtaaggtggtcttcctatcacactctttttatc
caggctactatcagaaggtactgcccacaatccaggtgagtctccccaca
gcaggcaactcaggtgattgattctaccttgtggaacattgacattatag
ccaactataaatactgtcttttctacccaaccaaaattttgtaatgagtt
tcttgacataaattcacctctatacattttgggtttggtatctggaccag
aaccgatgtgctttctaagtttgtattgcttgccttttcgtgaaattgtg
tgatgtatctttgaaacacagtgtctgtacaaaagaaagattaaaactga
ggggtggataattctggtgtgctgttgcatagtagagtgatcttaattaa
taataatatactttacatttcaaaatccaggagaaatgagttgaatgctt
tcactattaaaaaacaacagttattggaagagatacgtgtaacttgattt
cagcgttcaataatgtgtgcatatacggttggtatctcaataacattcag
tagcacatattttcacatcctggcatgtgtgtgttttcctatgcaggctg
ctcctggtgttccactctgacctgagtggtttttatcttcatgcctgctg
ttttcccacttccctctcagagactgaggcattccaaggtactacctgaa
agttatccttggtacaaaactatcaaatggaatattactagaacataagt
aattgtacttgtactggctagttttgtgtcactttgaccagctggagtat
caagagaaggaacttcagtttaggaatgcttcagggtacactgttaggca
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50715946_50716464
seq2: B6Ng01-071F05.b_42_560 (reverse)

seq1  GGAAAAGAGATAACATTTGTAATGTGAATAAAGAAAATAACCAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGATAACATTTGTAATGTGAATAAAGAAAATAACCAATAAAAA  50

seq1  AAGTAGATTTTTAAAAAAATCGAAGCTTACAGATTACAAATCTTTACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATTTTTAAAAAAATCGAAGCTTACAGATTACAAATCTTTACTAT  100

seq1  TTTTAAGTTTCTGCTAAAATACTGCCCTGTCTCTTCCAAATGAAATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTCTGCTAAAATACTGCCCTGTCTCTTCCAAATGAAATATGT  150

seq1  TAGAATACATGTAATCCCATCCAAGATAAATTACTATGGTGGAGTACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACATGTAATCCCATCCAAGATAAATTACTATGGTGGAGTACTAC  200

seq1  TTAAAGACAGAGATGGGTTAGAGATGGCATTGTGCTAAATCTTACTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAGAGATGGGTTAGAGATGGCATTGTGCTAAATCTTACTTTCC  250

seq1  TGAGCAATATTGAGAAGAACTTGGCTGCATCCTTTGGCAATAAGCTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATATTGAGAAGAACTTGGCTGCATCCTTTGGCAATAAGCTGCAC  300

seq1  ATTAAATAATTTGCGGTTGAGGTTTAAGCAAGATTCATGTTGGAAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAATTTGCGGTTGAGGTTTAAGCAAGATTCATGTTGGAAAGTCC  350

seq1  AGCTGTTTGGGGGAGTTTTATTCTTCTCCCATCAGACTATGTTGAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGGGGGAGTTTTATTCTTCTCCCATCAGACTATGTTGAGAGGG  400

seq1  GGGAAATTCTGCCAAGGTATTGAACGTGGCAAAGAAAGAATGTTACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTCTGCCAAGGTATTGAACGTGGCAAAGAAAGAATGTTACTGTC  450

seq1  CCCTTGCCTTTGCAGTCCTGTGTAAACCAGAAGGCTTGCCAGCAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCTTTGCAGTCCTGTGTAAACCAGAAGGCTTGCCAGCAAGAAAG  500

seq1  GAAATGAGTACCAGAATTC  519
      |||||||||||||||||||
seq2  GAAATGAGTACCAGAATTC  519

seq1: chr2_50563279_50564441
seq2: B6Ng01-071F05.g_66_1217

seq1  GAATTCTGTTTACTGTCTGTGGTAGTCAGGAATCTTTATACCAATAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTACTGTCTGTGGTAGTCAGGAATCTTTATACCAATAGAAC  50

seq1  CAGCCACTTAGCATTAAAATCACAGCATCGGAATCATAGCTGAGGCGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTTAGCATTAAAATCACAGCATCGGAATCATAGCTGAGGCGGAG  100

seq1  AACCAGGTATGTACAGTTCTTGAGGGCAGGTACTTCAGCAGTTGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTATGTACAGTTCTTGAGGGCAGGTACTTCAGCAGTTGGAATAT  150

seq1  TCCCATGGTAACTATCTGTCACTGGAGAGGCCAACCCAGTAGTAGCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTAACTATCTGTCACTGGAGAGGCCAACCCAGTAGTAGCCCCT  200

seq1  CCATGAGACTGAGCACTTCAGCAGCCTGAATATGGCAGCAAGAACCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGACTGAGCACTTCAGCAGCCTGAATATGGCAGCAAGAACCTCAA  250

seq1  AGATTCTTGGAGAACTACTGGTCCTTAGTCCATATCAGTAAAGGAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGGAGAACTACTGGTCCTTAGTCCATATCAGTAAAGGAATCAA  300

seq1  CAGCAGCAACAGGGAAGGTAAGGTGGTCTTCCTATCACACTCTTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAACAGGGAAGGTAAGGTGGTCTTCCTATCACACTCTTTTTATC  350

seq1  CAGGCTACTATCAGAAGGTACTGCCCACAATCCAGGTGAGTCTCCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACTATCAGAAGGTACTGCCCACAATCCAGGTGAGTCTCCCCACA  400

seq1  GCAGGCAACTCAGGTGATTGATTCTACCTTGTGGAACATTGACATTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAACTCAGGTGATTGATTCTACCTTGTGGAACATTGACATTATAG  450

seq1  CCAACTATAAATACTGTCTTTTCTACCCAACCAAAATTTTGTAATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTATAAATACTGTCTTTTCTACCCAACCAAAATTTTGTAATGAGTT  500

seq1  TCTTGACATAAATTCACCTCTATACATTTTGGGTTTGGTATCTGGACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATAAATTCACCTCTATACATTTTGGGTTTGGTATCTGGACCAG  550

seq1  AACCGATGTGCTTTCTAAGTTTGTATTGCTTGCCTTTTCGTGAAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGATGTGCTTTCTAAGTTTGTATTGCTTGCCTTTTCGTGAAATTGTG  600

seq1  TGATGTATCTTTGAAACACAGTGTCTGTACAAAAGAAAGATTAAAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATCTTTGAAACACAGTGTCTGTACAAAAGAAAGATTAAAACTGA  650

seq1  GGGGTGGATAATTCTGGTGTGCTGTTGCATAGTAGAGTGATCTTAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGATAATTCTGGTGTGCTGTTGCATAGTAGAGTGATCTTAATTAA  700

seq1  TAATAATATACTTTACATTTCAAAATCCAGGAGAAATGAGTTGAATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATACTTTACATTTCAAAATCCAGGAGAAATGAGTTGAATGCTT  750

seq1  TCACTATTAAAAAACAACAGTTATTGGAAGAGATACGTGTAACTTGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTAAAAAACAACAGTTATTGGAAGAGATACGTGTAACTTGATTT  800

seq1  CAGCGTTCAATAATGTGTGCATATACGGTTGGTATCTCAATAACATTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTCAATAATGTGTGCATATACGGTTGGTATCTCAATAACATTCAG  850

seq1  TAGCACATATTTTCACATCCTGGCATGTGTGTGTTTTCCTATGCAGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATATTTTCACATCCTGGCATGTGTGTGTTTTCCTATGCAGGCTG  900

seq1  CTCCTGGTGTTCCACTCTGACCTGAGTGGTTTTTATCTTCATGCCTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGTTCCACTCTGACCTGAGTGGTTTTTATCTTCATGCCTGCTG  950

seq1  TTTTCCCACTTCCCTCTCAGAGAACTGAGGCATTCCAAGGTAACTACCTG  1000
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TTTTCCCACTTCCCTCTCAGAG-ACTGAGGCATTCCAAGGT-ACTACCTG  998

seq1  AAAGGTTATCCTTGGTACAAAACTATCAAATGGAATA-TACTAG-ACATA  1048
      ||| ||||||||||||||||||||||||||||||||| |||||| |||||
seq2  AAA-GTTATCCTTGGTACAAAACTATCAAATGGAATATTACTAGAACATA  1047

seq1  AGTAATTTGTACTTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGG  1098
      ||||| |||||||||||||||||||||||||||||  ||||| |||||||
seq2  AGTAA-TTGTACTTGTACTGGCTAGTTTTGTGTCACTTTGAC-CAGCTGG  1095

seq1  AGTTATCACAGAGAAAGGAACTTCAGTTGAGGAAATGCCTCCAGGAGATA  1148
      || ||||| |||| |||||||||||||| ||| ||||| ||  ||   ||
seq2  AG-TATCA-AGAG-AAGGAACTTCAGTTTAGG-AATGCTTCAGGG---TA  1138

seq1  CAACTGTTAGGCATT  1163
      | |||||||||||||
seq2  C-ACTGTTAGGCATT  1152