BAC Information

Click to search

BAC

Clone NameB6Ng01-071F11
Chromosome2 (Build37)
Map Location 46,986,551 - 47,110,022
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F11.bB6Ng01-071F11.g
ACCDH889069DH889070
length1,2351,089
definitionDH889069|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F11, 5' end.DH889070|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,986,551 - 46,987,811)(47,108,924 - 47,110,022)
sequence
gaattcattgaattggaggtgaacttctgtagcagagtggttcctagtac
aatgattaccatgaaggacaaaggaggtcagagtatgctggacaactagc
cgggtacaagcattcacatttcctctctttccaacaaactcccttcaata
atataaacctgaaaaataaaatagagagtcctccatccacgtattctgtt
aatgaaattataagtactgattttctcttccaacaaaggctttggaacac
ctcctcacattctatctgtaaagagtttaaaaccattgataaaatgtact
tattctacatttctaccaagaaatagttctctttctatcagagttgatag
tctatactttctatggcttggtatttgtttttgaaacactgtttccttat
gtatccctgcatcaatggaacttgttctgtagatagttcagcctccccag
tgctaagattaaaagcatgtgccagcacacttaaccttacaattctctta
ttgtgtttattcaaacaatgtactatagaactgcctctacactgtctcca
tttctatataagttgatacattctaactctttcttcagagacagggactt
gtaggacctttctataaattgtttgtcatgtggtgagaagcatgggcgtc
agtttggtgaatacttgttactgaagcacaacaaagcagaacttgactat
ctatcattctgtaaatatatcctggatttcctgaaatttaattaaatcct
aaaaagtgaatttccccatgtcttagaatatgggctctgctgagtagatt
gaacactgagacaactgaaagatgctgtacattaaatagaaatgctatga
aacagctgacaaaaacagaaatagaacttttcaaggaaaatcaatttctt
tcatttatttcttaatcaacagtattttcaatgtttctgtgtttattaaa
gttctgtcgtcctgaaaatgatcaaaattctgatcttaccctactcttgt
tgcttagatttagtcaccttcctatataaaggattaatgataatttgttt
ttattatctgaaactgaagtgtatgaactgcctttgcactggtcagtgtt
atttttctttgcttgtgattttcccttctcattctatcatattcacagca
taacaatgtttgcattcttttctttcaaaatgaacttacctcactttggc
tttctgtgaattattcctgaattttagttaagact
gaattccttcatcccaggagtagaaaataaaatcatctatatggtcttgt
gtatgacctagaggttaagcatttgctcagcatatacaggaacctacatt
gaatgcttaataggacacaaaggcaaatgaaaaagtaattattttaattc
taatgatgttattttgattactcagaataaagatatgattgtcatttgtt
ttaaatttaatccctttctttctgttttaaaccttcatgtgaattttgga
gaacaaagaatttgagatattgttaattctactggatctgcagagacaca
acctggaaggagattgtagaccgatgactaatttgacctgattgcttctt
acattaagtaatctgaaaattaatttattgtgggggagtatttaagtaaa
ctttacttgcaacccaaagaattctggcatagctttgaaaggacagtttt
ttgttttttgttttttgttttttttttttattagtacacagtgcaggtta
gcactattttaagatcaattcagtaaattctatattttaaatgcaatgag
ggctgttagcatcagtttcaattaaaactgttgagatgattagacttgat
gcagtgtaatagtttatttcattttgggatttataataatgtagtcagta
attaacaagtaagctttacatttctaaaattgattataaagttattagga
caactgaggaattactgatatttatctgttgagactattttgaataaatg
ttctgagtgaaatttgaaatactagtatattgttgaagtctacattgaca
taaataatgtaattatagttagctgtacatagtatctcttactttgtaat
tactgataaatttagtttacttatatgtgcatctatctatctatctatct
atctatctatctatctatctatctctatttatagaaaatcgtgtctttcc
caggagcttactgattgaagagtataaaagatttttttttaattatcatt
cctttcatttacacttcaatgatatccaactttctgtttacccctccaca
acacccatccacatctgcctccctcctttgctgtatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46986551_46987811
seq2: B6Ng01-071F11.b_49_1283

seq1  GAATTCATTGAATTGGAGGTGAACTTCTGTAGCAGAGTGGTTCCTAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAATTGGAGGTGAACTTCTGTAGCAGAGTGGTTCCTAGTAC  50

seq1  AATGATTACCATGAAGGACAAAGGAGGTCAGAGTATGCTGGACAACTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTACCATGAAGGACAAAGGAGGTCAGAGTATGCTGGACAACTAGC  100

seq1  CGGGTACAAGCATTCACATTTCCTCTCTTTCCAACAAACTCCCTTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTACAAGCATTCACATTTCCTCTCTTTCCAACAAACTCCCTTCAATA  150

seq1  ATATAAACCTGAAAAATAAAATAGAGAGTCCTCCATCCACGTATTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACCTGAAAAATAAAATAGAGAGTCCTCCATCCACGTATTCTGTT  200

seq1  AATGAAATTATAAGTACTGATTTTCTCTTCCAACAAAGGCTTTGGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTATAAGTACTGATTTTCTCTTCCAACAAAGGCTTTGGAACAC  250

seq1  CTCCTCACATTCTATCTGTAAAGAGTTTAAAACCATTGATAAAATGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACATTCTATCTGTAAAGAGTTTAAAACCATTGATAAAATGTACT  300

seq1  TATTCTACATTTCTACCAAGAAATAGTTCTCTTTCTATCAGAGTTGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACATTTCTACCAAGAAATAGTTCTCTTTCTATCAGAGTTGATAG  350

seq1  TCTATACTTTCTATGGCTTGGTATTTGTTTTTGAAACACTGTTTCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACTTTCTATGGCTTGGTATTTGTTTTTGAAACACTGTTTCCTTAT  400

seq1  GTATCCCTGCATCAATGGAACTTGTTCTGTAGATAGTTCAGCCTCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTGCATCAATGGAACTTGTTCTGTAGATAGTTCAGCCTCCCCAG  450

seq1  TGCTAAGATTAAAAGCATGTGCCAGCACACTTAACCTTACAATTCTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGATTAAAAGCATGTGCCAGCACACTTAACCTTACAATTCTCTTA  500

seq1  TTGTGTTTATTCAAACAATGTACTATAGAACTGCCTCTACACTGTCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTATTCAAACAATGTACTATAGAACTGCCTCTACACTGTCTCCA  550

seq1  TTTCTATATAAGTTGATACATTCTAACTCTTTCTTCAGAGACAGGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATAAGTTGATACATTCTAACTCTTTCTTCAGAGACAGGGACTT  600

seq1  GTAGGACCTTTCTATAAATTGTTTGTCATGTGGTGAGAAGCATGGGCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACCTTTCTATAAATTGTTTGTCATGTGGTGAGAAGCATGGGCGTC  650

seq1  AGTTTGGTGAATACTTGTTACTGAAGCACAACAAAGCAGAACTTGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTGAATACTTGTTACTGAAGCACAACAAAGCAGAACTTGACTAT  700

seq1  CTATCATTCTGTAAATATATCCTGGATTTCCTGAAATTTAATTAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTCTGTAAATATATCCTGGATTTCCTGAAATTTAATTAAATCCT  750

seq1  AAAAAGTGAATTTCCCCATGTCTTAGAATATGGGCTCTGCTGAGTAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAATTTCCCCATGTCTTAGAATATGGGCTCTGCTGAGTAGATT  800

seq1  GAACACTGAGACAACTGAAAGATGCTGTACATTAAATAGAAATGCTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGAGACAACTGAAAGATGCTGTACATTAAATAGAAATGCTATGA  850

seq1  AACAGCTGACAAAAACAGAAATAGAACTTTTCAAGGAAAATCAATTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGACAAAAACAGAAATAGAACTTTTCAAGGAAAATCAATTTCTT  900

seq1  TCATTTATTTCTTAATCAACAGTATTTTCAATGTTTCTGTGTTTATTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTCTTAATCAACAGTATTTTCAATGTTTCTGTGTTTATTAAA  950

seq1  GTTCTGTCGTCCTGAAAATGATCAAAATTCTGATCTTACCCTACTCTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCGTCCTGAAAATGATCAAAATTCTGATCTTACCCTACTCTTGT  1000

seq1  TGCTTAGATTTAGTCACCTTCCTATATAAAGGATTAATGATAATTTGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGATTTAGTCACCTTCCTATATAAAGGATTAATGATAATTTGTTT  1050

seq1  TTATTATCTGAAACTGAAGTGTATGAACTTGCTTTTGCACTGGTCAGTGT  1100
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TTATTATCTGAAACTGAAGTGTATGAAC-TGCCTTTGCACTGGTCAGTGT  1099

seq1  TATTTTTCTTTTGCTTGTGATTTTCCCTTCTCATTCTAATCATATTCACA  1150
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TATTTTTC-TTTGCTTGTGATTTTCCCTTCTCATTCT-ATCATATTCACA  1147

seq1  GCATACAAAATGTTTGCATTCTTTTTTCTTTTTCAAAAAAAATGAAACTT  1200
      ||||| | |||||||||||||  ||||||||       ||||||||    
seq2  GCATA-ACAATGTTTGCATTC--TTTTCTTT------CAAAATGAA---C  1185

seq1  TTACCTCACTCTGTGGCTTTTCTGTGAAAATTTATTCTCATAATTTTTAG  1250
      ||||||||  || |||| ||||||||||   ||||  || | | ||||||
seq2  TTACCTCA--CTTTGGC-TTTCTGTGAA---TTAT--TCCTGAATTTTAG  1227

seq1  TTTAAAAGACT  1261
      ||   ||||||
seq2  TT---AAGACT  1235

seq1: chr2_47108924_47110022
seq2: B6Ng01-071F11.g_65_1153 (reverse)

seq1  TTCATACAGGCAAAAGGGAGGGGAGGGCAGATGTGGGATGGGGTGTTGGT  50
      |||||||| |||||  ||||||   ||||||||| |||| ||||||| ||
seq2  TTCATACA-GCAAA--GGAGGG--AGGCAGATGT-GGAT-GGGTGTT-GT  42

seq1  GGAGGGGTAAACAGAAAGTGGGATATCATTTGAAGTGTAAATGAAAGGAA  100
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GGAGGGGTAAACAGAAAGTTGGATATCA-TTGAAGTGTAAATGAAAGGAA  91

seq1  TGATTAATTAAAAAAAAATCTTTTATACTCTTCAATCAGTAAGCTCCTGG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-TAATTAAAAAAAAATCTTTTATACTCTTCAATCAGTAAGCTCCTGG  140

seq1  GAAAGACACGATTTTCTATAAATAGAGATAGATAGATAGATAGATAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACACGATTTTCTATAAATAGAGATAGATAGATAGATAGATAGATA  190

seq1  GATAGATAGATAGATAGATGCACATATAAGTAAACTAAATTTATCAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATGCACATATAAGTAAACTAAATTTATCAGTAA  240

seq1  TTACAAAGTAAGAGATACTATGTACAGCTAACTATAATTACATTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGTAAGAGATACTATGTACAGCTAACTATAATTACATTATTTAT  290

seq1  GTCAATGTAGACTTCAACAATATACTAGTATTTCAAATTTCACTCAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTAGACTTCAACAATATACTAGTATTTCAAATTTCACTCAGAAC  340

seq1  ATTTATTCAAAATAGTCTCAACAGATAAATATCAGTAATTCCTCAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAAAATAGTCTCAACAGATAAATATCAGTAATTCCTCAGTTGT  390

seq1  CCTAATAACTTTATAATCAATTTTAGAAATGTAAAGCTTACTTGTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAACTTTATAATCAATTTTAGAAATGTAAAGCTTACTTGTTAATT  440

seq1  ACTGACTACATTATTATAAATCCCAAAATGAAATAAACTATTACACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTACATTATTATAAATCCCAAAATGAAATAAACTATTACACTGCA  490

seq1  TCAAGTCTAATCATCTCAACAGTTTTAATTGAAACTGATGCTAACAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTAATCATCTCAACAGTTTTAATTGAAACTGATGCTAACAGCCC  540

seq1  TCATTGCATTTAAAATATAGAATTTACTGAATTGATCTTAAAATAGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATTTAAAATATAGAATTTACTGAATTGATCTTAAAATAGTGCT  590

seq1  AACCTGCACTGTGTACTAATAAAAAAAAAAAACAAAAAACAAAAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCACTGTGTACTAATAAAAAAAAAAAACAAAAAACAAAAAACAAA  640

seq1  AAACTGTCCTTTCAAAGCTATGCCAGAATTCTTTGGGTTGCAAGTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCCTTTCAAAGCTATGCCAGAATTCTTTGGGTTGCAAGTAAAGT  690

seq1  TTACTTAAATACTCCCCCACAATAAATTAATTTTCAGATTACTTAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAATACTCCCCCACAATAAATTAATTTTCAGATTACTTAATGTA  740

seq1  AGAAGCAATCAGGTCAAATTAGTCATCGGTCTACAATCTCCTTCCAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAATCAGGTCAAATTAGTCATCGGTCTACAATCTCCTTCCAGGTT  790

seq1  GTGTCTCTGCAGATCCAGTAGAATTAACAATATCTCAAATTCTTTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGCAGATCCAGTAGAATTAACAATATCTCAAATTCTTTGTTCT  840

seq1  CCAAAATTCACATGAAGGTTTAAAACAGAAAGAAAGGGATTAAATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTCACATGAAGGTTTAAAACAGAAAGAAAGGGATTAAATTTAAA  890

seq1  ACAAATGACAATCATATCTTTATTCTGAGTAATCAAAATAACATCATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGACAATCATATCTTTATTCTGAGTAATCAAAATAACATCATTAG  940

seq1  AATTAAAATAATTACTTTTTCATTTGCCTTTGTGTCCTATTAAGCATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATAATTACTTTTTCATTTGCCTTTGTGTCCTATTAAGCATTCA  990

seq1  ATGTAGGTTCCTGTATATGCTGAGCAAATGCTTAACCTCTAGGTCATACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTTCCTGTATATGCTGAGCAAATGCTTAACCTCTAGGTCATACA  1040

seq1  CAAGACCATATAGATGATTTTATTTTCTACTCCTGGGATGAAGGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCATATAGATGATTTTATTTTCTACTCCTGGGATGAAGGAATTC  1089