BAC Information

Click to search

BAC

Clone NameB6Ng01-071H07
Chromosome2 (Build37)
Map Location 51,970,178 - 52,082,946
singlet/doubletdoublet
Overlap geneRif1, Neb
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H07.bB6Ng01-071H07.g
ACCDH889152DH889153
length1,1141,153
definitionDH889152|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H07, 5' end.DH889153|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,970,178 - 51,971,303)(52,081,787 - 52,082,946)
sequence
gaattctttagaaggcttgtacaacttaactagaataactattgtactac
tgcttgataggaacttaggtttagtgtctgtttctgtctctgtctctcgt
tgaagacagggtcttgctatgtagtcctggctatacttgggaagatttaa
tttctgtggtagatactttgcccattcttaagaatcaatcctagaagata
tggaatgatactaatatccgctatatattttagcaaatagctcaatgtga
acatattgtagtcctttacaagaagcaaattcagccacagtgaggttaag
atagataaaaattgttgccctgtggccacaatatttgtattgccttcaga
gagtttagggcagggcacaggagatagcgtgggggatctcatgtttgcaa
agcaaccatgaggacctgagttcagtttctagaacccacgcttaaagtaa
gaatcctgggctgggtggcatgtcctaataatctctgtcttggggagaca
gacagccatattctggggtctgctgcttagtaagcctagtctacttgggg
aatttcaggccattgagaagcatcatctcacaaaattagttgtacaacac
ctgagcaatcactcccttcagagttgtcctctgacttccacatgcatgca
ttcacaagtttacatcgatgattaataagatataccagaagccagttact
accatccatagtatgtataatagagtttattggttaactaaatcaaatta
tacaggatttttaaaagaaatttattttttttttggtctgtacgtttgta
tatgcaaaagtcagtgatcctggtgaggccagaagaatgtatcagatccc
gtggagctggagttacagacttacgtagaactggcttgttaatgttggtg
ctaggatttgaactctggctgtcattatgcagctggtgcttttaacacct
aagctgtctttgagcccttgtttgttctttgaggctgagtttcactatga
agtcagactggctcaatttgtgatttctgcctttgtctctgtgctggatc
cacagtaacattgcattcctgcattgttttagaacagggtcttttctatg
ttagcctgactgat
gaattccagaaatggaagaccaagttcagcagcccagtggacatgctggg
ggtggtgctggccaagaagtgccagaccttggtcagcgatgtggactaca
ggaactacctgcacaactggacttgcctgcctgaccagaacgacattatt
caagcaaagaaggcctacgaactgcagagtgatgtatgtaacatcaactt
gggggcagatgatgaaggaggcgggaatatttgttaattgttctatcgga
accctgggcatagatgtgtggtctatgcacaacccagggaagtgttatcc
acattgtaatacctagatgaaaagccctactgaggccatatcttttattt
ccaaacaattctttcgtgtcctttgtaatttctagcaaatcaaacagata
cagtaagtctgaacatttaagaataattatcaccagttccaaaacagtat
atgagtcatttatcacagggttaaaatggaaagagattcaacaaaagttc
cctttaaatcttttcagttacataactgtcttaaaagttcaaataattat
gttgtggcatcataaatactactaatatagaaagtagaaatagctatgct
tttacaaatgactttttttgtcatcagtattaaaacccctgaatcctata
agaataaagttcttccttgtatacaaccaacattccccttgcttcccgcc
tctttcctcaaacccttgggttttcagctagcagggggtgtgtctaacat
tcagaactctttgctctgacttcttggcagagtgtgtataaagcagatct
ggagtggctgcgtggcattggctggatgccggaaggctccatagaaatga
ccagagtgaagggcgcccaagaccttgtgaatgagagactgtataggaca
cgaccagaagccttgaagtttacctccattgttgatactccagaagttgt
cctggcaaagccaattctctgcaaatgagtgaggtagagccatccaacta
ctgagcttcatggttccagacagtgtcagtcgacaatagataaagctgag
gaaacaagactgttcctcttcaacaatttatgagggtgcgagtctgaggt
atcgggactagctaatgcagaaccacatgaaagttgaactctgatgggga
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51970178_51971303
seq2: B6Ng01-071H07.b_43_1156

seq1  GAATTCTTTAGAAGGCTTGTACAACTTAACTAGAATAACTATTGTACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAGGCTTGTACAACTTAACTAGAATAACTATTGTACTAC  50

seq1  TGCTTGATAGGAACTTAGGTTTAGTGTCTGTTTCTGTCTCTGTCTCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATAGGAACTTAGGTTTAGTGTCTGTTTCTGTCTCTGTCTCTCGT  100

seq1  TGAAGACAGGGTCTTGCTATGTAGTCCTGGCTATACTTGGGAAGATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGGGTCTTGCTATGTAGTCCTGGCTATACTTGGGAAGATTTAA  150

seq1  TTTCTGTGGTAGATACTTTGCCCATTCTTAAGAATCAATCCTAGAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGTAGATACTTTGCCCATTCTTAAGAATCAATCCTAGAAGATA  200

seq1  TGGAATGATACTAATATCCGCTATATATTTTAGCAAATAGCTCAATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGATACTAATATCCGCTATATATTTTAGCAAATAGCTCAATGTGA  250

seq1  ACATATTGTAGTCCTTTACAAGAAGCAAATTCAGCCACAGTGAGGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTAGTCCTTTACAAGAAGCAAATTCAGCCACAGTGAGGTTAAG  300

seq1  ATAGATAAAAATTGTTGCCCTGTGGCCACAATATTTGTATTGCCTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAAAATTGTTGCCCTGTGGCCACAATATTTGTATTGCCTTCAGA  350

seq1  GAGTTTAGGGCAGGGCACAGGAGATAGCGTGGGGGATCTCATGTTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGGGCAGGGCACAGGAGATAGCGTGGGGGATCTCATGTTTGCAA  400

seq1  AGCAACCATGAGGACCTGAGTTCAGTTTCTAGAACCCACGCTTAAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATGAGGACCTGAGTTCAGTTTCTAGAACCCACGCTTAAAGTAA  450

seq1  GAATCCTGGGCTGGGTGGCATGTCCTAATAATCTCTGTCTTGGGGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGGCTGGGTGGCATGTCCTAATAATCTCTGTCTTGGGGAGACA  500

seq1  GACAGCCATATTCTGGGGTCTGCTGCTTAGTAAGCCTAGTCTACTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATATTCTGGGGTCTGCTGCTTAGTAAGCCTAGTCTACTTGGGG  550

seq1  AATTTCAGGCCATTGAGAAGCATCATCTCACAAAATTAGTTGTACAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGCCATTGAGAAGCATCATCTCACAAAATTAGTTGTACAACAC  600

seq1  CTGAGCAATCACTCCCTTCAGAGTTGTCCTCTGACTTCCACATGCATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATCACTCCCTTCAGAGTTGTCCTCTGACTTCCACATGCATGCA  650

seq1  TTCACAAGTTTACATCGATGATTAATAAGATATACCAGAAGCCAGTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGTTTACATCGATGATTAATAAGATATACCAGAAGCCAGTTACT  700

seq1  ACCATCCATAGTATGTATAATAGAGTTTATTGGTTAACTAAATCAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCATAGTATGTATAATAGAGTTTATTGGTTAACTAAATCAAATTA  750

seq1  TACAGGATTTTTAAAAGAAATTTA-TTTTTTTTTGGTCTGTACGTTTGTA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACAGGATTTTTAAAAGAAATTTATTTTTTTTTTGGTCTGTACGTTTGTA  800

seq1  TATGCAAAAGTCAGTGATCCTGGTGAGGCCAGAAGAATGTATCAGATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAAGTCAGTGATCCTGGTGAGGCCAGAAGAATGTATCAGATCCC  850

seq1  GTGGAGCTGGAGTTACAGACTTACGTAGAACTGGCTTGTTAATGTTGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTGGAGTTACAGACTTACGTAGAACTGGCTTGTTAATGTTGGTG  900

seq1  CTAGGATTTGAACTCTGGCTGTCATTATGCAGCTGGTGCTTTTAACACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTGAACTCTGGCTGTCATTATGCAGCTGGTGCTTTTAACACCT  950

seq1  AAGCTGTCTTTTGAGCCCTTGTTTTGTTCTTTGAGGCTGAGGTTTCACTA  999
      |||||||| |||||||||||| |||||||||||||||||| |||||||||
seq2  AAGCTGTC-TTTGAGCCCTTG-TTTGTTCTTTGAGGCTGA-GTTTCACTA  997

seq1  TGAAGTTCCAGACTGGCCTCAATTTGGTGATTTTCTGCCTTTGTCTCCTG  1049
      ||||||  |||||||| |||||||| |||| ||||||||||||||| |||
seq2  TGAAGT--CAGACTGG-CTCAATTT-GTGA-TTTCTGCCTTTGTCT-CTG  1041

seq1  TGCTGGGATCACAGGTATACATTGCCATTCCTGCATTTGTTTTTTAG-AC  1098
      ||||||   |||| ||| |||||| |||||||||||   | |||||| ||
seq2  TGCTGGATCCACA-GTA-ACATTG-CATTCCTGCAT---TGTTTTAGAAC  1085

seq1  AGGGTC-TTTCTATGTAGCCCTGACTGAT  1126
      |||||| |||||||||   ||||||||||
seq2  AGGGTCTTTTCTATGTTAGCCTGACTGAT  1114

seq1: chr2_52081787_52082946
seq2: B6Ng01-071H07.g_65_1217 (reverse)

seq1  CATTCCCCCATCAGAGTTCTACTTTCAATGTG--TCTGCATTAAGCTAGT  48
      |||| |||||||||||||| |||||| |||||  |||||||| |||||||
seq2  CATT-CCCCATCAGAGTTCAACTTTC-ATGTGGTTCTGCATT-AGCTAGT  47

seq1  CCCGATACCCTCAGACTCGCACCCTCAATAAAATTGTTTGAAGA-GAACA  97
      ||||||| |||||||||||||||||||   |||||| ||||||| |||||
seq2  CCCGATA-CCTCAGACTCGCACCCTCA--TAAATTG-TTGAAGAGGAACA  93

seq1  GTC-TGTTTCCTCAGCTTTATCTATTGTCGACTGAACACTGTCTGGAACC  146
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCTTGTTTCCTCAGCTTTATCTATTGTCGACTG-ACACTGTCTGGAACC  142

seq1  ATGGAAGCTCAGTAGTTGGATGGCTCTTACCTCACTCATTTGCAGAGAAT  196
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AT-GAAGCTCAGTAGTTGGATGGCTC-TACCTCACTCATTTGCAGAGAAT  190

seq1  TGGCTTTTGCCAGGACAACTTCTGGAGTATCAACAATGGAGGTAAACTTC  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGC-TTTGCCAGGACAACTTCTGGAGTATCAACAATGGAGGTAAACTTC  239

seq1  AAGGCTTCTGGTCGTGTCCTATACAGTCTCTCATTCACAAGGTCTTGGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCTGGTCGTGTCCTATACAGTCTCTCATTCACAAGGTCTTGGGC  289

seq1  GCCCTTCACTCTGGTCATTTCTATGGAGCCTTCCGGCATCCAGCCAATGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCACTCTGGTCATTTCTATGGAGCCTTCCGGCATCCAGCCAATGC  339

seq1  CACGCAGCCACTCCAGATCTGCTTTATACACACTCTGCCAAGAAGTCAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCCACTCCAGATCTGCTTTATACACACTCTGCCAAGAAGTCAGA  389

seq1  GCAAAGAGTTCTGAATGTTAGACACACCCCCTGCTAGCTGAAAACCCAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGTTCTGAATGTTAGACACACCCCCTGCTAGCTGAAAACCCAAG  439

seq1  GGTTTGAGGAAAGAGGCGGGAAGCAAGGGGAATGTTGGTTGTATACAAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGGAAAGAGGCGGGAAGCAAGGGGAATGTTGGTTGTATACAAGG  489

seq1  AAGAACTTTATTCTTATAGGATTCAGGGGTTTTAATACTGATGACAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTTATTCTTATAGGATTCAGGGGTTTTAATACTGATGACAAAAA  539

seq1  AAGTCATTTGTAAAAGCATAGCTATTTCTACTTTCTATATTAGTAGTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTGTAAAAGCATAGCTATTTCTACTTTCTATATTAGTAGTATT  589

seq1  TATGATGCCACAACATAATTATTTGAACTTTTAAGACAGTTATGTAACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGCCACAACATAATTATTTGAACTTTTAAGACAGTTATGTAACTG  639

seq1  AAAAGATTTAAAGGGAACTTTTGTTGAATCTCTTTCCATTTTAACCCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTAAAGGGAACTTTTGTTGAATCTCTTTCCATTTTAACCCTGT  689

seq1  GATAAATGACTCATATACTGTTTTGGAACTGGTGATAATTATTCTTAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGACTCATATACTGTTTTGGAACTGGTGATAATTATTCTTAAAT  739

seq1  GTTCAGACTTACTGTATCTGTTTGATTTGCTAGAAATTACAAAGGACACG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACTTACTGTATCTGTTTGATTTGCTAGAAATTACAAAGGACACG  789

seq1  AAAGAATTGTTTGGAAATAAAAGATATGGCCTCAGTAGGGCTTTTCATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTGTTTGGAAATAAAAGATATGGCCTCAGTAGGGCTTTTCATCT  839

seq1  AGGTATTACAATGTGGATAACACTTCCCTGGGTTGTGCATAGACCACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTACAATGTGGATAACACTTCCCTGGGTTGTGCATAGACCACACA  889

seq1  TCTATGCCCAGGGTTCCGATAGAACAATTAACAAATATTCCCGCCTCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCCAGGGTTCCGATAGAACAATTAACAAATATTCCCGCCTCCTT  939

seq1  CATCATCTGCCCCCAAGTTGATGTTACATACATCACTCTGCAGTTCGTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTGCCCCCAAGTTGATGTTACATACATCACTCTGCAGTTCGTAG  989

seq1  GCCTTCTTTGCTTGAATAATGTCGTTCTGGTCAGGCAGGCAAGTCCAGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTGCTTGAATAATGTCGTTCTGGTCAGGCAGGCAAGTCCAGTT  1039

seq1  GTGCAGGTAGTTCCTGTAGTCCACATCGCTGACCAAGGTCTGGCACTTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTAGTTCCTGTAGTCCACATCGCTGACCAAGGTCTGGCACTTCT  1089

seq1  TGGCCAGCACCACCCCCAGCATGTCCACTGGGCTGCTGAACTTGGTCTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCACCACCCCCAGCATGTCCACTGGGCTGCTGAACTTGGTCTTC  1139

seq1  CATTTCTGGAATTC  1160
      ||||||||||||||
seq2  CATTTCTGGAATTC  1153