BAC Information

Click to search

BAC

Clone NameB6Ng01-071M17
Chromosome2 (Build37)
Map Location 93,664,257 - 93,834,790
singlet/doubletdoublet
Overlap gene2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2
Downstream geneHsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M17.bB6Ng01-071M17.g
ACCDH889390DH889391
length1,1361,172
definitionDH889390|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M17, 5' end.DH889391|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,664,257 - 93,665,404)(93,833,597 - 93,834,790)
sequence
gaattccacaggacagtggcttgtatcattttaaaaagaaaacttaaggt
ttattattattattattattattattgttattctatcacgtattggtctc
tctgtgtgagagaattgcatgaaagtgcatgccagaagatggcattgggt
ctcctggaactacagggagttgtaaactgtctgatggtgctaggaatcaa
actctggtcctcgaaaagagcagcaagttctctaaaccactgaatcataa
ctccaacccaaggttttacttcttaaaagcaggtcagctgtagctgtctg
cactgggagattttgtcttgtttcttatctgtttcctttgtatttgtgtg
tctttttcaacatgtttttaatgctttgtacgtgttagcattaagtgaac
gtttactgggttacaaaattgtgttatgcatggcctttgggagcccttgc
ctgccttgttcacattttatagccttaagcttgcatggtgcctggaatat
ggcacgtgttcagtgtttgttaagtgactaaagggggcaagatcacgaat
gcgctaactaggaataagacaagtgtgcaagtgaggctacataaagcaga
gagtgagaagctgagaagagtgtagatacaacgcttcagcctcaagagga
aagaggccacgtgcaactgaaaatatctaagtgttattagacgcgttctc
acgaccggccaggaagaacaccacagaccagaatcttctgcggcaaagct
ttatttcttacatcttcaggagcaagcgtgtaagaagcaagagagcaaga
agcaagagagagagaaaacgaaaccccgtccctcttaaggagcattctcc
ttcgcctcggacgtgtcactccctgattggctgcagcccatcggccgagt
tgacgtcacggggaaggcagagcacaagtagtcataagatacccttggca
catgcgcagattatttgtttaccacttagaacacagctgtcagcgcatct
tgtacggcgatgtgggcgcggctccacatctccccttatcctttaataag
agcaaataggccacccatattatgggagtggagataaggtcaaattccca
gtgtgtagtaagaaccatgtacagaatagctcttag
gaattcccaaagtatgctatctgggtagtttccatgtacatctagttccc
aagtgataaacatgagcagtgtgttagtgtccagaaataccccttcctgt
ctcccctcccagcacagaagcccttcattccctcttagaaagacctgtct
cagggactgggcctacagctcagcggtacagtgcatatgcaaggccctgg
gttcttagagcgtaacagccaaaccaagccaaagcccgatgcatggtgaa
caaggagggtttatggtaatcacctgttatgttgtaggctggtgtgtggt
cagcaaacagcacacacagcattgtttctgggtgtgagtacgtggagcat
gaagtctatttttcagaaacctgggaaagtataggtcatggagtagtgaa
agaggtcaggtcccctcagtatccctggactacaactgtgccagctgtgt
taatggaacataattcatctcataagtgagaaaatttatctgaggtcttg
aaataaagttggctgcggaaatgaggtcgggaagaaacataaacagtcag
tgctccaggttactctggtaaagtctgcctcactttaactgattgaattg
ggcacagttctcgtgcatattctctattttgacttttgttgaagatggag
aaactgaatgttattgtgtttgagattataatcacacattggtgattacg
gcttagaagttccactcttgagtaaacacagttcgtgtttaaacttttga
ggactcactcagttttcattaacagattccaaaattctggagccctgtaa
atgtaaccaaatgcagaagccttctttgagttgacagccatggaaatatt
tctcaggtatacatcttattgcaaatggtcctttcctaaaggattcaagg
gaacttgctaggcaatctttgtctccttttacatttaggtactagttcag
agagtaagccttgtgactcctaacacaaagtgaaattgtacattaaacag
aaaagtcacctcctctgtgggccttagaggactgactcttctgatgtcac
tgctggtggtagttttcttgactgcaacagggcagttagtgagttagtta
ctgtaggaagagagtccccaaacctctaggagggttctccccacactctt
aggagggagttcccccacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93664257_93665404
seq2: B6Ng01-071M17.b_48_1183

seq1  GAATTCCACAGGACAGTGGCTTGTATCATTTTAAAAAGAAAACTTAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGACAGTGGCTTGTATCATTTTAAAAAGAAAACTTAAGGT  50

seq1  TTATTATTATTATTATTATTATTATTGTTATTCTATCACGTATTGGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTATTATTGTTATTCTATCACGTATTGGTCTC  100

seq1  TCTGTGTGAGAGAATTGCATGAAAGTGCATGCCAGAAGATGGCATTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGAGAGAATTGCATGAAAGTGCATGCCAGAAGATGGCATTGGGT  150

seq1  CTCCTGGAACTACAGGGAGTTGTAAACTGTCTGATGGTGCTAGGAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACTACAGGGAGTTGTAAACTGTCTGATGGTGCTAGGAATCAA  200

seq1  ACTCTGGTCCTCGAAAAGAGCAGCAAGTTCTCTAAACCACTGAATCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTCCTCGAAAAGAGCAGCAAGTTCTCTAAACCACTGAATCATAA  250

seq1  CTCCAACCCAAGGTTTTACTTCTTAAAAGCAGGTCAGCTGTAGCTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCAAGGTTTTACTTCTTAAAAGCAGGTCAGCTGTAGCTGTCTG  300

seq1  CACTGGGAGATTTTGTCTTGTTTCTTATCTGTTTCCTTTGTATTTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGATTTTGTCTTGTTTCTTATCTGTTTCCTTTGTATTTGTGTG  350

seq1  TCTTTTTCAACATGTTTTTAATGCTTTGTACGTGTTAGCATTAAGTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAACATGTTTTTAATGCTTTGTACGTGTTAGCATTAAGTGAAC  400

seq1  GTTTACTGGGTTACAAAATTGTGTTATGCATGGCCTTTGGGAGCCCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGGGTTACAAAATTGTGTTATGCATGGCCTTTGGGAGCCCTTGC  450

seq1  CTGCCTTGTTCACATTTTATAGCCTTAAGCTTGCATGGTGCCTGGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGTTCACATTTTATAGCCTTAAGCTTGCATGGTGCCTGGAATAT  500

seq1  GGCACGTGTTCAGTGTTTGTTAAGTGACTAAAGGGGGCAAGATCACGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTGTTCAGTGTTTGTTAAGTGACTAAAGGGGGCAAGATCACGAAT  550

seq1  GCGCTAACTAGGAATAAGACAAGTGTGCAAGTGAGGCTACATAAAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTAACTAGGAATAAGACAAGTGTGCAAGTGAGGCTACATAAAGCAGA  600

seq1  GAGTGAGAAGCTGAGAAGAGTGTAGATACAACGCTTCAGCCTCAAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAAGCTGAGAAGAGTGTAGATACAACGCTTCAGCCTCAAGAGGA  650

seq1  AAGAGGCCACGTGCAACTGAAAATATCTAAGTGTTATTAGACGCGTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCACGTGCAACTGAAAATATCTAAGTGTTATTAGACGCGTTCTC  700

seq1  ACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAGCT  750

seq1  TTATTTCTTACATCTTCAGGAGCAAGCGTGTAAGAAGCAAGAGAGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTACATCTTCAGGAGCAAGCGTGTAAGAAGCAAGAGAGCAAGA  800

seq1  AGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCC  850

seq1  TTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGT  900

seq1  TGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCA  950

seq1  CATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCG-CATC  999

seq1  TTGTAACGGCGAATGTGGGCGCGGCTCCCAACATCTCCCCCTATCCTTTT  1050
      |||| |||||| ||||||||||||||||  |||||||||| ||||| |||
seq2  TTGT-ACGGCG-ATGTGGGCGCGGCTCC--ACATCTCCCCTTATCC-TTT  1044

seq1  AATAAGAGCAAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCA  1100
      ||||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  AATAAGAGCAAATAGGCCACCCATATT-ATGGGAGTGGAGATA-AGGTCA  1092

seq1  AATCCCCAGTGTGTAGGTAAAGGAGCCATGTACAGGATTAGCTCTTAG  1148
      ||| ||||||||||| ||||  || ||||||||| || ||||||||||
seq2  AATTCCCAGTGTGTA-GTAA--GAACCATGTACA-GAATAGCTCTTAG  1136

seq1: chr2_93833597_93834790
seq2: B6Ng01-071M17.g_69_1240 (reverse)

seq1  GAGTGTGGGGGACTCCATTCTAGAGTGTGGGGG-ACTCCCTCCT-AGAGT  48
                            ||||||||||| |||||||||| |||||
seq2  ----------------------GAGTGTGGGGGAACTCCCTCCTAAGAGT  28

seq1  GT-GGGAGACTCCTTCCTAGAGTTTGTGGGACTCTC-TCCTACAGTCACT  96
      || ||||||  || |||||||| ||  ||||||||| ||||||||| |||
seq2  GTGGGGAGA-ACCCTCCTAGAGGTTTGGGGACTCTCTTCCTACAGTAACT  77

seq1  AACTCACTTACCTGCCTTGTTGGCAGTCAGGAAAACTACAACCAGCAGTG  146
      ||||||| || ||||| |||| ||||||| ||||||||| ||||||||||
seq2  AACTCAC-TAACTGCCCTGTT-GCAGTCAAGAAAACTACCACCAGCAGTG  125

seq1  ACATTCAG-AGAGTCAGTCCTCTAAGGCCCACAGAGGA-GTGACTTTTCT  194
      ||| |||| ||||||||||||||||||||||||||||| |||||||||||
seq2  ACA-TCAGAAGAGTCAGTCCTCTAAGGCCCACAGAGGAGGTGACTTTTCT  174

seq1  GTTTAATGTACAATTTCACTTTGTGTTAGGAGTCACAAGGCTTACTCTCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGTACAATTTCACTTTGTGTTAGGAGTCACAAGGCTTACTCTCT  224

seq1  GAACTAGTACCTAAATGTAAAAGGAGACAAAGATTTGCCTAGCAAGTTCC  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAACTAGTACCTAAATGTAAAAGGAGACAAAGA-TTGCCTAGCAAGTTCC  273

seq1  CTTGAATCCTTTAGGAAAGGACCATTTGCAATAAGATGTATACCCTGAGA  344
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGAATCCTTTAGGAAAGGACCATTTGCAATAAGATGTATA-CCTGAGA  322

seq1  AATATTTCCATGGCTGTCAACTCAAAGAAGGCTTCTGCATTTGGTTACAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCCATGGCTGTCAACTCAAAGAAGGCTTCTGCATTTGGTTACAT  372

seq1  TTACAGGGCTCCAGAATTTTGGAATCTGTTAATGAAAACTGAGTGAGTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGCTCCAGAATTTTGGAATCTGTTAATGAAAACTGAGTGAGTCC  422

seq1  TCAAAAGTTTAAACACGAACTGTGTTTACTCAAGAGTGGAACTTCTAAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTTTAAACACGAACTGTGTTTACTCAAGAGTGGAACTTCTAAGC  472

seq1  CGTAATCACCAATGTGTGATTATAATCTCAAACACAATAACATTCAGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATCACCAATGTGTGATTATAATCTCAAACACAATAACATTCAGTTT  522

seq1  CTCCATCTTCAACAAAAGTCAAAATAGAGAATATGCACGAGAACTGTGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTCAACAAAAGTCAAAATAGAGAATATGCACGAGAACTGTGCC  572

seq1  CAATTCAATCAGTTAAAGTGAGGCAGACTTTACCAGAGTAACCTGGAGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATCAGTTAAAGTGAGGCAGACTTTACCAGAGTAACCTGGAGCA  622

seq1  CTGACTGTTTATGTTTCTTCCCGACCTCATTTCCGCAGCCAACTTTATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTTTATGTTTCTTCCCGACCTCATTTCCGCAGCCAACTTTATTT  672

seq1  CAAGACCTCAGATAAATTTTCTCACTTATGAGATGAATTATGTTCCATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTCAGATAAATTTTCTCACTTATGAGATGAATTATGTTCCATTA  722

seq1  ACACAGCTGGCACAGTTGTAGTCCAGGGATACTGAGGGGACCTGACCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGCACAGTTGTAGTCCAGGGATACTGAGGGGACCTGACCTCT  772

seq1  TTCACTACTCCATGACCTATACTTTCCCAGGTTTCTGAAAAATAGACTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTACTCCATGACCTATACTTTCCCAGGTTTCTGAAAAATAGACTTC  822

seq1  ATGCTCCACGTACTCACACCCAGAAACAATGCTGTGTGTGCTGTTTGCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACGTACTCACACCCAGAAACAATGCTGTGTGTGCTGTTTGCTG  872

seq1  ACCACACACCAGCCTACAACATAACAGGTGATTACCATAAACCCTCCTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACCAGCCTACAACATAACAGGTGATTACCATAAACCCTCCTTG  922

seq1  TTCACCATGCATCGGGCTTTGGCTTGGTTTGGCTGTTACGCTCTAAGAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATGCATCGGGCTTTGGCTTGGTTTGGCTGTTACGCTCTAAGAAC  972

seq1  CCAGGGCCTTGCATATGCACTGTACCGCTGAGCTGTAGGCCCAGTCCCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTTGCATATGCACTGTACCGCTGAGCTGTAGGCCCAGTCCCTG  1022

seq1  AGACAGGTCTTTCTAAGAGGGAATGAAGGGCTTCTGTGCTGGGAGGGGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTCTTTCTAAGAGGGAATGAAGGGCTTCTGTGCTGGGAGGGGAG  1072

seq1  ACAGGAAGGGGTATTTCTGGACACTAACACACTGCTCATGTTTATCACTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGGGTATTTCTGGACACTAACACACTGCTCATGTTTATCACTT  1122

seq1  GGGAACTAGATGTACATGGAAACTACCCAGATAGCATACTTTGGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTAGATGTACATGGAAACTACCCAGATAGCATACTTTGGGAATTC  1172