BAC Information

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BAC

Clone NameB6Ng01-071N04
Chromosome15 (Build37)2 (Build37)
Map Location 93,829,734 - 93,830,651142,776,677 - 142,777,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
Downstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071N04.bB6Ng01-071N04.g
ACCDH889411DH889412
length1,035558
definitionDH889411|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N04, 5' end.DH889412|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,829,734 - 93,830,651)(142,776,677 - 142,777,216)
sequence
gaattcagtttcctgattttttttcaaagaatcttgccttctatctataa
aggtcattgttctgtggtatctttgtctagctttaacggttgggtaattt
ttactttacagaatgaggtaggaagtgtttctatttaatttgttaaatgt
ttgtggaatgataatcagtctcattcccacccccaccccccaaattctaa
tccctttatacctactcatttatattgtctgaatagctgtgtgggcattg
gtaccatcgcatgcccgtggatgccagagaacgacctgctggagctggtt
ctctctttctatcatatgggtttcaggaatgaaactcaagccattagacg
actcaacgtaagcatatttacccactgaggcatcttgacagcttgctcat
ttttgtaaaaactcttttttacttcaccagcaaggacaccagtctctgag
actgtgttgctcttgttgggatatttaagacgagtgatctaatctcctta
cctgttatatcatcttagtcaggttttctatttacttttttattcattta
ttctttatcaagtctttcttcccaaaaattctctatcttatttgctattc
ctggtttgcagtacaattaattattcagtatatactcttttatagctcat
ttttgggtttgtgggactagtgttggcatgcctactttcaattctgattt
ttaggttatttcattctttttcttcctctcactgcctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctaatccatcttgaagaacgaactgaccaaatttgaatttataaaat
atctctgttgcttgtgtcatttctcttccatttatttcttctctaaagcc
taataattttgttgttgttctgttatcttacgtttagtttcttcttttct
agttttcttggttctgaactgacagtcttgctgcatctctttattttttt
atgcatttgctttagcactgagtttccctcatacc
gaattctttgtttagatctgtaccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctttttgtatatattagatattagtcccc
taccagatttaggattggaaaaattcctttcccaatctgttggtggtctt
tttgtcttattgacagcgtctttggtcttacagaagctttgcaattttat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcgaggcttttccccact
ttctcctctattgcggtgtctctggttttatgtggaggtctttgatccac
ttagacttgagctttgtacaaggagataagaatgtatcaattcgcattct
tctacataataaccgccagttgtgccatcaccatttgttggaaatgctgt
ctttttttccactggatggttttagctcccttgtcaaagatcaagtggcc
ataggtgtgtgggttcatttctgggtcttcaattctcttccattgatcta
cctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93829734_93830651
seq2: B6Ng01-071N04.b_44_961

seq1  GAATTCAGTTTCCTGATTTTTTTTCAAAGAATCTTGCCTTCTATCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCCTGATTTTTTTTCAAAGAATCTTGCCTTCTATCTATAA  50

seq1  AGGTCATTGTTCTGTGGTATCTTTGTCTAGCTTTAACGGTTGGGTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTGTTCTGTGGTATCTTTGTCTAGCTTTAACGGTTGGGTAATTT  100

seq1  TTACTTTACAGAATGAGGTAGGAAGTGTTTCTATTTAATTTGTTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTACAGAATGAGGTAGGAAGTGTTTCTATTTAATTTGTTAAATGT  150

seq1  TTGTGGAATGATAATCAGTCTCATTCCCACCCCCACCCCCCAAATTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAATGATAATCAGTCTCATTCCCACCCCCACCCCCCAAATTCTAA  200

seq1  TCCCTTTATACCTACTCATTTATATTGTCTGAATAGCTGTGTGGGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTATACCTACTCATTTATATTGTCTGAATAGCTGTGTGGGCATTG  250

seq1  GTACCATCGCATGCCCGTGGATGCCAGAGAACGACCTGCTGGAGCTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCGCATGCCCGTGGATGCCAGAGAACGACCTGCTGGAGCTGGTT  300

seq1  CTCTCTTTCTATCATATGGGTTTCAGGAATGAAACTCAAGCCATTAGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTATCATATGGGTTTCAGGAATGAAACTCAAGCCATTAGACG  350

seq1  ACTCAACGTAAGCATATTTACCCACTGAGGCATCTTGACAGCTTGCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACGTAAGCATATTTACCCACTGAGGCATCTTGACAGCTTGCTCAT  400

seq1  TTTTGTAAAAACTCTTTTTTACTTCACCAGCAAGGACACCAGTCTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAAACTCTTTTTTACTTCACCAGCAAGGACACCAGTCTCTGAG  450

seq1  ACTGTGTTGCTCTTGTTGGGATATTTAAGACGAGTGATCTAATCTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTGCTCTTGTTGGGATATTTAAGACGAGTGATCTAATCTCCTTA  500

seq1  CCTGTTATATCATCTTAGTCAGGTTTTCTATTTACTTTTTTATTCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATATCATCTTAGTCAGGTTTTCTATTTACTTTTTTATTCATTTA  550

seq1  TTCTTTATCAAGTCTTTCTTCCCAAAAATTCTCTATCTTATTTGCTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCAAGTCTTTCTTCCCAAAAATTCTCTATCTTATTTGCTATTC  600

seq1  CTGGTTTGCAGTACAATTAATTATTCAGTATATACTCTTTTATAGCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGCAGTACAATTAATTATTCAGTATATACTCTTTTATAGCTCAT  650

seq1  TTTTGGGTTTGTGGGACTAGTGTTGGCATGCCTACTTTCAATTCTGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTGTGGGACTAGTGTTGGCATGCCTACTTTCAATTCTGATTT  700

seq1  TTAGGTTATTTCATTCTTTTTCTTCCTCTCACTGCCTTTCTTTCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTATTTCATTCTTTTTCTTCCTCTCACTGCCTTTCTTTCTTTCTT  750

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  800

seq1  TTTCTAATCCATCTTGAAGAACGAACTGACCAAATTTGAATTTATAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATCCATCTTGAAGAACGAACTGACCAAATTTGAATTTATAAAAT  850

seq1  ATCTCTGTTGCTTGTGTCATTTCTCTTCCATTTATTTCTTCTCTAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTTGCTTGTGTCATTTCTCTTCCATTTATTTCTTCTCTAAAGCC  900

seq1  TAATAATTTTGTTGTTGT  918
      ||||||||||||||||||
seq2  TAATAATTTTGTTGTTGT  918

seq1: chr2_142776677_142777216
seq2: B6Ng01-071N04.g_90_625 (reverse)

seq1  CAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCAC  50
      |||||| ||||| |||||||| ||||||||||||||||||||||||||||
seq2  CAGACAGGTAGATCAATGGAAGAGAATTGAAGACCCAGAAATGAACCCAC  50

seq1  ACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGG  100
      |||||||||| ||||||||||| |||||||||||||||||||||||| ||
seq2  ACACCTATGGCCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGG  100

seq1  -AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  149
       || ||||||||||||| |||||| ||||| ||||||||||||  |||||
seq2  AAAAAAAGACAGCATTTCCAACAAATGGTGATGGCACAACTGGCGGTTAT  150

seq1  CATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  199
       ||||||||||||| |||| ||| ||| ||||||||||||||| ||| ||
seq2  TATGTAGAAGAATGCGAATTGATACATTCTTATCTCCTTGTACAAAGCTC  200

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  249
      || |||||||||||||| || || ||||||||||||||||||| | |   
seq2  AAGTCTAAGTGGATCAAAGACCTCCACATAAAACCAGAGACACCGCA---  247

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACA  299
       |||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  -ATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAA  296

seq1  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  346

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  399
      ||||||||||| || ||| | ||||| ||||| ||| | |||||| | ||
seq2  AAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGACCAAAGACGCTGT  396

seq1  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  449
      ||||||||||||||||||||||||||||||||||||||  ||| || |||
seq2  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGAATTTTTCCAATC  446

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  499
      ||||||| | ||||||||||||||| || ||||| ||| | |||||||||
seq2  CTAAATCTGGTAGGGGACTAATATCTAATATATACAAAAAGCTCAAGAAG  496

seq1  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  540
       |||||| |||||| ||||||||||||||| ||||||||||
seq2  CTGGACTCCAGAAATTCAAATAACCCCATT-AAAAATGGGG  536