BAC Information

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BAC

Clone NameB6Ng01-071O11
Chromosome2 (Build37)
Map Location 176,818,381 - 176,985,536
singlet/doubletdoublet
Overlap gene6230416C02Rik, LOC635470, LOC100043403
Upstream geneLOC100039036, LOC100039049, LOC626832, OTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166
Downstream geneLOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O11.bB6Ng01-071O11.g
ACCDH889469DH889470
length1,1471,121
definitionDH889469|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O11, 5' end.DH889470|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,818,381 - 176,819,541)(176,984,401 - 176,985,536)
sequence
gaattcactctgtatacaggcaggcctcgaactcagaaatccacctacct
ctgcctccctagtgctgggattaaaggtgtgtaccaccactgcccggctc
attcttatttttaaagagattttatatatgtctgtttagagaaacatctc
ctgtagctcttactttctttgtgccatgtaatcagacttgctttgaactc
ctaatcctccctctgctgcccagggcttggaaaacagtcctacaactgct
ttcaggctgggttctgactgattagtgagacaaaagacaccagggaatga
gtgttgtctaacctccctgggttacagggttacaaattaggggattacaa
ataaagagggacaggtataaggttgagttcactgaccaactttgaagctg
gtctacttgcagcacagaaaaggaggaggaataaggtaggtgaggccttt
ctgctttggcagtagttgacattcaccatgaggagtcaagtaatcaattt
tacacaatcagtaaaattccatactggacattttgtggcatttcccagat
tagggcaatgacaaatgagatcatggtccctctctgttacagcatattgc
tggcatacctcaccatcaaccccaggagtagggctgccaatctcccagct
gccattccttatggaatccaaccatttgggaactggcctttttatctatc
attaatcatcctgatctcctggtctaactcttgcttctcccctccttcct
ctctccacaaagttcaaggttatgtctactctataccatcccaaatataa
ctaggtctggctatgttctcacttttgtgtataatatactttctcctcca
ccatacctaggagcaatgctatcctttacttttaatttcatctttgtctt
cccttttctctcccattaactgcttctagctttaaaattcatagccactt
ttacttttaaattattgttaatgtatgaattttatttcagttcagctgca
agactttcatattaagaaatagaagatgctgcacaggacatgcatgcata
atgaatatatcagaaacgaccatgggcctttaaattaaaatacttgctgc
agactagaattcttttaatgtaattttgggaatagcctatgtctgca
gaattcccatttcaggatctgtattagataaacatgtgcaatccttgggt
gacatatttaagtgagctcaaaaatgtaaaacacatgccattacttgtaa
ctgtgtgtgtcacattataggtctcagtagttaacaaagcacataggggc
aaggtcaaatgctatcttattaatgacattccttctaccaggaagagcct
gatctttttcaaatcagtacaggaatatattttttcaattatattgatct
ttttaaatattaaattttggtattacttttctgaatttcattttcattat
gcataggtgatttgacgtcttacgtgtttctattctccaatgtttccccc
aaattaagaatttcattcctatttttaaagagatttcatatctgtctgtt
tagagaaacatctcctgtagctcctactttctttatgccatgcagttaag
acttgctttgaacttctaatccagcctctgctgcccagggcttggaaaac
agtcctacaactgctttcaggctgggttctgactgatcagtgagacaaaa
gacaccatggaatgagtgttgtctaacctccctgggttacagggttacaa
attaggggattacaaataaagagggacaggtataaggttgagttcactga
ccaactttgaagctggtctacttgcagcacagaaatggaggaggaataag
gtaggtgtcttagtcagggtttctattcctgcacaaacatgctgaccaag
aagcaagttggggaggaaagggttcattcggcttacacttccaccctgct
gttcatcaccaaaggaagtcaggactggaactcaagcaggtcagaaagca
gagctgatgcagaggccatggagggatgttctttactggcttgcttcccc
tggcttgctcagcctgctctcttatagaacccaagactaccagcccagga
tggtcccacccacaaggggcctttccccttgatcactaattgagaaatgc
cttacagtggactcatggagcatttcctcaactgaagctcttctctgtgt
tactccagctgtgttcagtgacacaaaactagccagtacattgacccctg
acactgaacaacaaacacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_176818381_176819541
seq2: B6Ng01-071O11.b_45_1191

seq1  GAATTCACTCTGTATACAGGCAGGCCTCGAACTCAGAAATCCACCTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTATACAGGCAGGCCTCGAACTCAGAAATCCACCTACCT  50

seq1  CTGCCTCCCTAGTGCTGGGATTAAAGGTGTGTACCACCACTGCCCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTAGTGCTGGGATTAAAGGTGTGTACCACCACTGCCCGGCTC  100

seq1  ATTCTTATTTTTAAAGAGATTTTATATATGTCTGTTTAGAGAAACATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTTTTAAAGAGATTTTATATATGTCTGTTTAGAGAAACATCTC  150

seq1  CTGTAGCTCTTACTTTCTTTGTGCCATGTAATCAGACTTGCTTTGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTCTTACTTTCTTTGTGCCATGTAATCAGACTTGCTTTGAACTC  200

seq1  CTAATCCTCCCTCTGCTGCCCAGGGCTTGGAAAACAGTCCTACAACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTCCCTCTGCTGCCCAGGGCTTGGAAAACAGTCCTACAACTGCT  250

seq1  TTCAGGCTGGGTTCTGACTGATTAGTGAGACAAAAGACACCAGGGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTGGGTTCTGACTGATTAGTGAGACAAAAGACACCAGGGAATGA  300

seq1  GTGTTGTCTAACCTCCCTGGGTTACAGGGTTACAAATTAGGGGATTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCTAACCTCCCTGGGTTACAGGGTTACAAATTAGGGGATTACAA  350

seq1  ATAAAGAGGGACAGGTATAAGGTTGAGTTCACTGACCAACTTTGAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGGGACAGGTATAAGGTTGAGTTCACTGACCAACTTTGAAGCTG  400

seq1  GTCTACTTGCAGCACAGAAAAGGAGGAGGAATAAGGTAGGTGAGGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTGCAGCACAGAAAAGGAGGAGGAATAAGGTAGGTGAGGCCTTT  450

seq1  CTGCTTTGGCAGTAGTTGACATTCACCATGAGGAGTCAAGTAATCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGGCAGTAGTTGACATTCACCATGAGGAGTCAAGTAATCAATTT  500

seq1  TACACAATCAGTAAAATTCCATACTGGACATTTTGTGGCATTTCCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATCAGTAAAATTCCATACTGGACATTTTGTGGCATTTCCCAGAT  550

seq1  TAGGGCAATGACAAATGAGATCATGGTCCCTCTCTGTTACAGCATATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAATGACAAATGAGATCATGGTCCCTCTCTGTTACAGCATATTGC  600

seq1  TGGCATACCTCACCATCAACCCCAGGAGTAGGGCTGCCAATCTCCCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACCTCACCATCAACCCCAGGAGTAGGGCTGCCAATCTCCCAGCT  650

seq1  GCCATTCCTTATGGAATCCAACCATTTGGGAACTGGCCTTTTTATCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCTTATGGAATCCAACCATTTGGGAACTGGCCTTTTTATCTATC  700

seq1  ATTAATCATCCTGATCTCCTGGTCTAACTCTTGCTTCTCCCCTCCTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATCCTGATCTCCTGGTCTAACTCTTGCTTCTCCCCTCCTTCCT  750

seq1  CTCTCCACAAAGTTCAAGGTTATGTCTACTCTATACCATCCCAAATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACAAAGTTCAAGGTTATGTCTACTCTATACCATCCCAAATATAA  800

seq1  CTAGGTCTGGCTATGTTCTCACTTTTGTGTATAATATACTTTCTCCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTGGCTATGTTCTCACTTTTGTGTATAATATACTTTCTCCTCCA  850

seq1  CCATACCTAGGAGCAATGCTATCCTTTACTTTTAATTTCATCTTTGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTAGGAGCAATGCTATCCTTTACTTTTAATTTCATCTTTGTCTT  900

seq1  CCCTTTTCTCTCCCATTAACTGCTTCTAGCTTTAAAATTCATAGCCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTCTCCCATTAACTGCTTCTAGCTTTAAAATTCATAGCCACTT  950

seq1  TTACTTTTAAATTATTGTTAATGTATGAATTTTATTTCAGTTCAGCTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTAAATTATTGTTAATGTATGAATTTTATTTCAGTTCAGCTGCA  1000

seq1  AGACTTTCATATTAAGAAATAG-AGATGGCTGCACAGGACATTGCATGCA  1049
      |||||||||||||||||||||| |||| ||||||||||||| ||||||||
seq2  AGACTTTCATATTAAGAAATAGAAGAT-GCTGCACAGGACA-TGCATGCA  1048

seq1  TAATTGAATATACAAAGAAAGGACCATGGGCCTTTTAAATATAAAATACT  1099
      ||| ||||||||   ||||| ||||||||||| ||||||| |||||||||
seq2  TAA-TGAATATA-TCAGAAACGACCATGGGCC-TTTAAAT-TAAAATACT  1094

seq1  TGGTCTGCAGGACTAGAACATTCTTTTAAATGTACATTTTTGAGATTAGG  1149
      ||  ||||| |||||||  |||||||| |||||  | ||||| || || |
seq2  TG--CTGCA-GACTAGA--ATTCTTTT-AATGT--AATTTTGGGAATA-G  1135

seq1  GCTATGTCTGCA  1161
       |||||||||||
seq2  CCTATGTCTGCA  1147

seq1: chr2_176984401_176985536
seq2: B6Ng01-071O11.g_67_1187 (reverse)

seq1  GATGTGTTTGTGTGTCAAGTTGTCAAGGGGTCAATTGTACTGGCTAGTTT  50
      ||||||||||| |||  || |||| ||||||||| |||||||||||||||
seq2  GATGTGTTTGT-TGTTCAG-TGTC-AGGGGTCAA-TGTACTGGCTAGTTT  46

seq1  TGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTT  100
      |||||| |||  |||||||||||| || |||||||||  |||||||||||
seq2  TGTGTC-ACTGAACACAGCTGGAG-TAACACAGAGAA--GAGCTTCAGTT  92

seq1  GAGGAAATGCCTCCATGAGGTCCAACTGTAAGGCATTTTCTCAATTAGTG  150
      ||||||||| |||||||| |||| ||||||||||| ||||||||||||||
seq2  GAGGAAATG-CTCCATGA-GTCC-ACTGTAAGGCA-TTTCTCAATTAGTG  138

seq1  ATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCCCTGGGCTGGTAGT  200
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCAA-GGGGAAAGGCCCCTTGTGGGTGGGACCAT-CCTGGGCTGGTAGT  186

seq1  CTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAG  236

seq1  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTG  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCT-CTGCTTTCTGACCTG  285

seq1  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGGGTGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGGGTGGAAGT  335

seq1  GTAAGCCGAATGAACCCTTTCCTCCCCAACTTGCTTCTTGGTCAGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCGAATGAACCCTTTCCTCCCCAACTTGCTTCTTGGTCAGCATGT  385

seq1  TTGTGCAGGAATAGAAACCCTGACTAAGACACCTACCTTATTCCTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGGAATAGAAACCCTGACTAAGACACCTACCTTATTCCTCCTCC  435

seq1  ATTTCTGTGCTGCAAGTAGACCAGCTTCAAAGTTGGTCAGTGAACTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGCTGCAAGTAGACCAGCTTCAAAGTTGGTCAGTGAACTCAAC  485

seq1  CTTATACCTGTCCCTCTTTATTTGTAATCCCCTAATTTGTAACCCTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCTGTCCCTCTTTATTTGTAATCCCCTAATTTGTAACCCTGTAA  535

seq1  CCCAGGGAGGTTAGACAACACTCATTCCATGGTGTCTTTTGTCTCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAGGTTAGACAACACTCATTCCATGGTGTCTTTTGTCTCACTGA  585

seq1  TCAGTCAGAACCCAGCCTGAAAGCAGTTGTAGGACTGTTTTCCAAGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAACCCAGCCTGAAAGCAGTTGTAGGACTGTTTTCCAAGCCCT  635

seq1  GGGCAGCAGAGGCTGGATTAGAAGTTCAAAGCAAGTCTTAACTGCATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCAGAGGCTGGATTAGAAGTTCAAAGCAAGTCTTAACTGCATGGC  685

seq1  ATAAAGAAAGTAGGAGCTACAGGAGATGTTTCTCTAAACAGACAGATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAGTAGGAGCTACAGGAGATGTTTCTCTAAACAGACAGATATG  735

seq1  AAATCTCTTTAAAAATAGGAATGAAATTCTTAATTTGGGGGAAACATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTTAAAAATAGGAATGAAATTCTTAATTTGGGGGAAACATTGG  785

seq1  AGAATAGAAACACGTAAGACGTCAAATCACCTATGCATAATGAAAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAACACGTAAGACGTCAAATCACCTATGCATAATGAAAATGAA  835

seq1  ATTCAGAAAAGTAATACCAAAATTTAATATTTAAAAAGATCAATATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAAGTAATACCAAAATTTAATATTTAAAAAGATCAATATAATT  885

seq1  GAAAAAATATATTCCTGTACTGATTTGAAAAAGATCAGGCTCTTCCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATATATTCCTGTACTGATTTGAAAAAGATCAGGCTCTTCCTGGT  935

seq1  AGAAGGAATGTCATTAATAAGATAGCATTTGACCTTGCCCCTATGTGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATGTCATTAATAAGATAGCATTTGACCTTGCCCCTATGTGCTT  985

seq1  TGTTAACTACTGAGACCTATAATGTGACACACACAGTTACAAGTAATGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTACTGAGACCTATAATGTGACACACACAGTTACAAGTAATGGC  1035

seq1  ATGTGTTTTACATTTTTGAGCTCACTTAAATATGTCACCCAAGGATTGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTACATTTTTGAGCTCACTTAAATATGTCACCCAAGGATTGCA  1085

seq1  CATGTTTATCTAATACAGATCCTGAAATGGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATCTAATACAGATCCTGAAATGGGAATTC  1121