BAC Information

Click to search

BAC

Clone NameB6Ng01-072O05
Chromosome2 (Build37)
Map Location 138,773,790 - 138,775,073
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O05.bB6Ng01-072O05.g
ACCDH890174DH890175
length1,2511,230
definitionDH890174|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O05, 5' end.DH890175|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgctctaatgtattctttctttgaaacaaagttcatccaagcta
tgtcatttagttttgaaaatatcacatttagtacactttgttctatttac
agattttcctacatgcacattaattaattcaaaaatgtgtaaaaaatatt
cagtctccatctctatctgacacaagcaataaaattaaccatataaaaat
aaaaatatatgttaggtgtggtagcacatgtctttaatcgtagcattcag
gaggcagtgctaggagcatatcgaagtgtccagcctggacacaaagctag
ttcctggaacagccggtgctatacaaagaaaccctatctcaaataaaata
agataagagaacacaacaaaacataagataaaataaaataaaagcaaact
aactatatcctttctctagactgcagagggaccactatagcattttaaag
gttaggcccaaatgtttaaagtaatatataataccattcatgtcacagta
agaagtggacttcataaagttcagagaaattatgttgggaaatgcttaaa
atgcttttttatgtcaaccaagccaatgagtccctctagattttaggatg
aatgagtgagacagtcagaggtaattatataacatactatactattttaa
cacttctcaaggtgttaactgttctggtattttacaatagttttcagaga
acagagaatataaaccaatcggtaagcttgcttttttggatggcctgatt
actattttaaactacttattaatagtgttatgcttgccaaactcccttat
ccaatattatcagcatttcataccttacagaaagcactggatataaggaa
ggggggtgtgtttcacatttagtcatagcctacaagcacaggatgagatg
tgttgtaaaagtgatctctagttattagcctttcatgttcctttgaagtg
tgattttagtactacccaataaaaatagaaatgtattttaagctttggat
ctcaaggtgaccttgtagctagcttctgaccaactggtagactgaaatcc
tcgatggtgtgtcgatatattattcaggctcaacaccccttgatgctgaa
ttattttctagcggacttcttcagatgggtgtgcagatcttgatgtattc
agtatacagtgagaaccacttcacatggcgctccgcttctgcaatgacca
taggctttgatgacgtaatctggctacacggatcctatgacccagggagc
t
gaattcctgaacagagcggcaatggctggtgctataagatcgagaatcga
cagatgggacctcataaagttgcaaagcttctgtaaggcaaaagacacca
agaatgagacaaaaagtccaccaacagattgggaaaggatcttaacctat
cctaaatcagataggggactaatatccaatatatataaagaactcaagaa
ggtagactccagaaaatcaaataaccccactaaaaatggagtacagagct
aaacaaagaattctcaactgaggaagaatttggtagaatggctgagaagc
acctgaaaaaaaaagttcaacatccttaatcatcagggaaatgcaaatca
aagcaaccctgagattctaccttacaccagtcagaatggctaagataaaa
aaactcaggtgacagcagatgctggtgggaatacaagttggtacaaccac
tctggaaatcagtctagcaattcctcagaaaattggacatagtactgctg
gaagatccagcaatacctttcctgggcatatacccagaagatgttccaac
ttgtaataagcacacatgctccactatgtccatagcagccttatttataa
tagccagaacctggaaagaacccagatgtctctcaacagaggaatggata
cagaaaatgtgatacatttacacaatggagtactactcagctattaaaaa
caataaatttatgaaattcttaggcaaatggatggatctggaggatatca
tactgagtgagttaacccaatcacaaaagaactcacatgatatgcactca
ttgataagtggatattagcccagaaacttagaatacccaagataccattt
gcaaaacatatgaaactcaaaaagaaggaagaccaaaatgtggatacttc
attccttcttagaatgaagaacaaaatacccatgtaaggagttacagaag
acaaagttcagagctgagacagaaggaaggaccatccaggagactgccca
cccaagttccattccataatcagccaccaaagcaggacattattgcccat
gcagccagcagattgctgaaagacctgatgttgctgtctccttgggagct
tgcaatgctggcaaacagaatgatgctccagtcatctttgggtgaaccag
actctatgagaactagagaagtccagacctaggattcgcactagagaaca
catgatgatcgtacctcgactatgttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138773790_138775073
seq2: B6Ng01-072O05.b_46_1296 (reverse)

seq1  AGCTCCCTTGTTC-TAGGTGGCTCCTGTCTGTACCATGATTACAGTCAAT  49
      |||||||| | || ||   || |||    |||| |  |||||| ||||  
seq2  AGCTCCCTGGGTCATA---GGATCC---GTGTAGCCAGATTAC-GTCA--  41

seq1  TCTACAAAGCACTAAATTTTGGGTCATTTGTCAGAGAGCTGGAGCAGCCC  99
          |||||| |||       |||||||   |||| ||| ||||| ||| 
seq2  ---TCAAAGC-CTA------TGGTCATT--GCAGA-AGC-GGAGC-GCCA  76

seq1  AGTGAAGTGGGTCCTACAACTCTTATTACCTGAATAACCATCAAGATCTT  149
       ||||||||| ||  ||      | |   |||||||  |||||||||| |
seq2  TGTGAAGTGGTTCTCAC------TGTATACTGAATA--CATCAAGATC-T  117

seq1  GCACA-CCATCTTGAGATAGTCTCGCTAG-AAATAATTCAAGCATTCAAA  197
      ||||| ||||||  ||| |||| |||||| ||||||||| |||| |||| 
seq2  GCACACCCATCTGAAGA-AGTC-CGCTAGAAAATAATTC-AGCA-TCAAG  163

seq1  GAGTGTTGAAGCCTGAAATAATATATCGACACACCATCGA-GATTTCAGT  246
      | |||||| |||||| |||||||||||||||||||||||| |||||||||
seq2  GGGTGTTG-AGCCTG-AATAATATATCGACACACCATCGAGGATTTCAGT  211

seq1  CTA-CAGTTGGTCAG-AGCTAGCTACAAGGTCACC-TGAGATTCAAAGCT  293
      ||| ||||||||||| ||||||||||||||||||| |||||| |||||||
seq2  CTACCAGTTGGTCAGAAGCTAGCTACAAGGTCACCTTGAGATCCAAAGCT  261

seq1  TAAAATACATTTTCTATTTTTATTGGGTAGTACTAAAATCACACTTCAAA  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACA-TTTCTATTTTTATTGGGTAGTACTAAAATCACACTTCAAA  310

seq1  GGAACATGGAAGGCTAATAACTAGAGATCACTTTTACAACACATCTCATC  393
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGAAAGGCTAATAACTAGAGATCACTTTTACAACACATCTCATC  360

seq1  CTGTGCTTGTAGGCTATGACTAAATGTGAAACACACCCCCCTTCCTTATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTGTAGGCTATGACTAAATGTGAAACACACCCCCCTTCCTTATA  410

seq1  TCCAGTGCTTTCTGTAAGGTATGAAATGCTGATAATATTGGATAAGGGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTTTCTGTAAGGTATGAAATGCTGATAATATTGGATAAGGGAG  460

seq1  TTTGGCAAGCATAACACTATTAATAAGTAGTTTAAAATAGTAATCAGGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAGCATAACACTATTAATAAGTAGTTTAAAATAGTAATCAGGCC  510

seq1  ATCCAAAAAAGCAAGCTTACCGATTGGTTTATATTCTCTGTTCTCTGAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAAAGCAAGCTTACCGATTGGTTTATATTCTCTGTTCTCTGAAA  560

seq1  ACTATTGTAAAATACCAGAACAGTTAACACCTTGAGAAGTGTTAAAATAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTAAAATACCAGAACAGTTAACACCTTGAGAAGTGTTAAAATAG  610

seq1  TATAGTATGTTATATAATTACCTCTGACTGTCTCACTCATTCATCCTAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATGTTATATAATTACCTCTGACTGTCTCACTCATTCATCCTAAA  660

seq1  ATCTAGAGGGACTCATTGGCTTGGTTGACATAAAAAAGCATTTTAAGCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGGGACTCATTGGCTTGGTTGACATAAAAAAGCATTTTAAGCAT  710

seq1  TTCCCAACATAATTTCTCTGAACTTTATGAAGTCCACTTCTTACTGTGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACATAATTTCTCTGAACTTTATGAAGTCCACTTCTTACTGTGAC  760

seq1  ATGAATGGTATTATATATTACTTTAAACATTTGGGCCTAACCTTTAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTATTATATATTACTTTAAACATTTGGGCCTAACCTTTAAAAT  810

seq1  GCTATAGTGGTCCCTCTGCAGTCTAGAGAAAGGATATAGTTAGTTTGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTGGTCCCTCTGCAGTCTAGAGAAAGGATATAGTTAGTTTGCTT  860

seq1  TTATTTTATTTTATCTTATGTTTTGTTGTGTTCTCTTATCTTATTTTATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTATCTTATGTTTTGTTGTGTTCTCTTATCTTATTTTATT  910

seq1  TGAGATAGGGTTTCTTTGTATAGCACCGGCTGTTCCAGGAACTAGCTTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGGGTTTCTTTGTATAGCACCGGCTGTTCCAGGAACTAGCTTTG  960

seq1  TGTCCAGGCTGGACACTTCGATATGCTCCTAGCACTGCCTCCTGAATGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGCTGGACACTTCGATATGCTCCTAGCACTGCCTCCTGAATGCT  1010

seq1  ACGATTAAAGACATGTGCTACCACACCTAACATATATTTTTATTTTTATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTAAAGACATGTGCTACCACACCTAACATATATTTTTATTTTTATA  1060

seq1  TGGTTAATTTTATTGCTTGTGTCAGATAGAGATGGAGACTGAATATTTTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATTTTATTGCTTGTGTCAGATAGAGATGGAGACTGAATATTTTT  1110

seq1  TACACATTTTTGAATTAATTAATGTGCATGTAGGAAAATCTGTAAATAGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTTTGAATTAATTAATGTGCATGTAGGAAAATCTGTAAATAGA  1160

seq1  ACAAAGTGTACTAAATGTGATATTTTCAAAACTAAATGACATAGCTTGGA  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTACTAAATGTGATATTTTCAAAACTAAATGACATAGCTTGGA  1210

seq1  TGAACTTTGTTTCAAAGAAAGAATACATTAGAGCAGAATTC  1284
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTTTCAAAGAAAGAATACATTAGAGCAGAATTC  1251