BAC Information

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BAC

Clone NameB6Ng01-072O07
Chromosome2 (Build37)1 (Build37)
Map Location 142,776,586 - 142,777,698123,901,211 - 123,902,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O07.bB6Ng01-072O07.g
ACCDH890178DH890179
length8231,126
definitionDH890178|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O07, 5' end.DH890179|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,586 - 142,777,698)(123,901,211 - 123,902,357)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttcttctctataagtttcagtgtctctggttttatgtgaagttccttaa
tccacttagatttgaccttagtacaaggagataagtatggatcgatttgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcgtccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcagcatggtgattccaacagaggttctttt
atccttgagaagagtttttgctatcctaggtttttgttattccagatgaa
tttgcaaattgctccttctaattcgttgagaatgagttggaatttgatgg
ggattgcattgaatctgtagattgctttggcaagatagccattttacatg
ttgatctgccatcatgagcatgg
gaattcaagcaggaactaaaccaaaaattatgggagaaagaaacttgctg
actcatgcttaagtaccttccttattcagtgaggggcccttctacatgac
ctccttaatgaccaaggaaatcttccacagacatgcttacagcatacacc
aacacaataaggtcaattaatcaacagactctcttttccgatgattctag
actgtgtcaagttgacaattttgagatcttgtttctctttataccactac
aagaaaagtagcctaaactttctgactatctgctatgcatcctgccatcc
actgttcagggatttgttcattacgtttttactataaccttagaaaatgc
atagattagtattattatttgctaggagaaatgttcaaggcttagagaaa
ttcttaaacttacacaggtagctttcaatttataagtaataagttcacat
ttgaaagcaaatgctacatgaatatgtctaggacccaagcaccaatgcac
tacttggtatttattttatttattttcatcttctatcagacttcaaaaca
ggttgtgtcatcttgtctattactagcttgagcttggagcagctggagat
gtactcggcctatccactcttttctagcatgcaataaactctgagtttga
tccacagcactgcatagaccaaatgtggccatgctcacctgtgatcctag
cacttggaatgagaaggcaggatgaccaggactgaatagtcatccttggc
caaggtcatcctaagctaaagaaggagcaagttggagcacagcttggact
acctgaaactctgtcttaaaaattgttttaaggagctgagcaaatgtctc
aatgcattaagatgtttgccaccaagtctgagacctgagctttattgcca
gaattcacatgatgaatggagagaactgattctcaaaactgtcctctggc
tccaccccagtgcaatggcatgtacacaaaataaataaatttataaaaag
gaattgatgtcttatataattaagaaaggcaatagtcagagaggaagatg
gagaacaaagtagatgaaatccctatgagccagccagagtaaatgatggg
aagaaatgtcctgatctgatgtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776586_142777698
seq2: B6Ng01-072O07.b_43_694 (reverse)

seq1  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  50
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  ATAAAAGAACCTCTGTTGGAATCACCATG-CTGACCTAAAGCTTTACTAC  49

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  99

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  149

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  200
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGACGAAAGAC  199

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  249

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  300
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  299

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  350
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGATTAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGAAG  349

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  399

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  449

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  500
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  499

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  549

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  599

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  650
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  639

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  700
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  652

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  750
                                                        
seq2  --------------------------------------------------  652

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  800
                                                        
seq2  --------------------------------------------------  652

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  850
                                                        
seq2  --------------------------------------------------  652

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  900
                                                        
seq2  --------------------------------------------------  652

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  950
                                                        
seq2  --------------------------------------------------  652

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  1000
                                                        
seq2  --------------------------------------------------  652

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  1050
                                                        
seq2  --------------------------------------------------  652

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1100
                                                        
seq2  --------------------------------------------------  652

seq1  GAACAAAGAATTC  1113
                   
seq2  -------------  652

seq1: chr1_123901211_123902357
seq2: B6Ng01-072O07.g_67_1192

seq1  GAATTCAAGCAGGAACTAAACCAAAAATTATGGGAGAAAGAAACTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGGAACTAAACCAAAAATTATGGGAGAAAGAAACTTGCTG  50

seq1  ACTCATGCTTAAGTACCTTCCTTATTCAGTGAGGGGCCCTTCTACATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCTTAAGTACCTTCCTTATTCAGTGAGGGGCCCTTCTACATGAC  100

seq1  CTCCTTAATGACCAAGGAAATCTTCCACAGACATGCTTACAGCATACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATGACCAAGGAAATCTTCCACAGACATGCTTACAGCATACACC  150

seq1  AACACAATAAGGTCAATTAATCAACAGACTCTCTTTTCCGATGATTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATAAGGTCAATTAATCAACAGACTCTCTTTTCCGATGATTCTAG  200

seq1  ACTGTGTCAAGTTGACAATTTTGAGATCTTGTTTCTCTTTATACCACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCAAGTTGACAATTTTGAGATCTTGTTTCTCTTTATACCACTAC  250

seq1  AAGAAAAGTAGCCTAAACTTTCTGACTATCTGCTATGCATCCTGCCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTAGCCTAAACTTTCTGACTATCTGCTATGCATCCTGCCATCC  300

seq1  ACTGTTCAGGGATTTGTTCATTACGTTTTTACTATAACCTTAGAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGGGATTTGTTCATTACGTTTTTACTATAACCTTAGAAAATGC  350

seq1  ATAGATTAGTATTATTATTTGCTAGGAGAAATGTTCAAGGCTTAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAGTATTATTATTTGCTAGGAGAAATGTTCAAGGCTTAGAGAAA  400

seq1  TTCTTAAACTTACACAGGTAGCTTTCAATTTATAAGTAATAAGTTCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAACTTACACAGGTAGCTTTCAATTTATAAGTAATAAGTTCACAT  450

seq1  TTGAAAGCAAATGCTACATGAATATGTCTAGGACCCAAGCACCAATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAAATGCTACATGAATATGTCTAGGACCCAAGCACCAATGCAC  500

seq1  TACTTGGTATTTATTTTATTTATTTTCATCTTCTATCAGACTTCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTATTTATTTTATTTATTTTCATCTTCTATCAGACTTCAAAACA  550

seq1  GGTTGTGTCATCTTGTCTATTACTAGCTTGAGCTTGGAGCAGCTGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTCATCTTGTCTATTACTAGCTTGAGCTTGGAGCAGCTGGAGAT  600

seq1  GTACTCGGCCTATCCACTCTTTTCTAGCATGCAATAAACTCTGAGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCGGCCTATCCACTCTTTTCTAGCATGCAATAAACTCTGAGTTTGA  650

seq1  TCCACAGCACTGCATAGACCAAATGTGGCCATGCTCACCTGTGATCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCACTGCATAGACCAAATGTGGCCATGCTCACCTGTGATCCTAG  700

seq1  CACTTGGAATGAGAAGGCAGGATGACCAGGACTGAATAGTCATCCTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAATGAGAAGGCAGGATGACCAGGACTGAATAGTCATCCTTGGC  750

seq1  CAAGGTCATCCTAAGCTAAAGAAGGAGCAAGTTGGAGCACAGCTTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATCCTAAGCTAAAGAAGGAGCAAGTTGGAGCACAGCTTGGACT  800

seq1  ACCTGAAACTCTGTCTTAAAAATTGTTTTAAGGAGCTGAGCAAAATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTGAAACTCTGTCTTAAAAATTGTTTTAAGGAGCTGAGC-AAATGTCT  849

seq1  CAATGCATTAAGATGTTTGCCACCAAGTCTGAAGACCTGAGCTTTATTGC  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAATGCATTAAGATGTTTGCCACCAAGTCTG-AGACCTGAGCTTTATTGC  898

seq1  CAGAATTCACATGATGAATGGAGAGAACTGATTCTCAAAAACTGTCCTCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGAATTCACATGATGAATGGAGAGAACTGATTCTC-AAAACTGTCCTCT  947

seq1  GGCTTCCACCCCAGTGCAATGGCATGTACACAAAATAAATAAATTTATTA  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGC-TCCACCCCAGTGCAATGGCATGTACACAAAATAAATAAATTTA-TA  995

seq1  AAAAGGAATTGATGTCCTTATATAAATAAGATAGGCAAAATAGTCAGAGA  1050
      ||||||||||||||| ||||||||| ||||| ||||  ||||||||||||
seq2  AAAAGGAATTGATGT-CTTATATAATTAAGAAAGGC--AATAGTCAGAGA  1042

seq1  GGAAAGATGGAAGAACAAAAGTTAGAATGAAAATCCCTTATGAGCCAGCA  1100
      || ||||||| ||||||||   ||| ||| ||||||| ||||||||||| 
seq2  GG-AAGATGG-AGAACAAA--GTAG-ATG-AAATCCC-TATGAGCCAGC-  1084

seq1  CAGATGTAGAGTGAATGGAGAGATATGGTCCCTGATCTGATGTCAGA  1147
      |||| ||| | || ||||  ||| |||   |||||||||||||||||
seq2  CAGA-GTA-AATG-ATGGGAAGAAATG--TCCTGATCTGATGTCAGA  1126