BAC Information

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BAC

Clone NameB6Ng01-072P03
Chromosome2 (Build37)4 (Build37)
Map Location 80,331,561 - 80,331,921112,196,915 - 112,197,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P03.bB6Ng01-072P03.g
ACCDH890218DH890219
length1,006994
definitionDH890218|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P03, 5' end.DH890219|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,561 - 80,331,921)(112,196,915 - 112,197,866)
sequence
gaattcctgttcttttcaagatttttatcatgaatgggtgttgaattttg
tcaaatgctttctcagcatctaatgagatgatcatgtggtttttgtcttt
gcatgtgtttataaagtggattatgttgatggatttccatatattaaacc
atctttgcatccctgggatgaagcctacttgatcatgatggatgactgtt
ttgatgtgttcttggattcggtttgtgaggatcttattgagtatttttgc
attgatattcataagggaaattggtctgaatttctctttctttgccggat
ctttgtgtggtttaggtttcagagtaattgtggcatcatagaatgaattg
ggtagagtaccttctgtttctattttgtggaatagattgaggagagttgg
aattaggtattcttccactcatgtcagaaaattctttctaggtaggtaga
taagcctcagtttcatgcatcatcagccaaagaatatacaagtgactgct
gacagagctttattatgattttctgtaatatcatatacttttaaatattg
caatatatagtcaaccaggtatttggggttcatctccataaacccataaa
acatagcacatttaccaatgatgcattccacctgatgagatgcaaagaaa
attttccacaataaggctaccctttccaaatgataatctactctcagata
tcttagtcttggttgcataatttatatctcatcccaaagagcatacaact
ctaactaaagaaaataggctcatcattccatatctcatatgaaaggatat
agatgtagagtttgacttgtacagatgccttatcctcagattgattggtc
agactcacattgaccattgcatagtttaggtaaccattcttccccaacat
tttctggttagacaagacaaaacaaaataagaagtagtttattcatgtca
acagtgcacccatgaagaagatcatgatattactccatatttgtgacgat
gagctt
gaattctcatagtgggtactactttgtatttggtaagacattaataagat
acttgactaagaaaacaaaataaaaaaccacctacatgaatctaaaaaaa
ataaataaaaaaaaataaaactagaaaagaaaatttaatttcactcagat
tgcagtgatagaacaagtatgtcttcccaatagcagtacagatcttgaca
ctatatggatatgacaaaaagctaggtagagttgaaaggttttgcaaagc
tcattgcatctcctacataccaaaaaagttggttcataccagggtttggc
agacaccctgtgtttggtgtaagatgaacataggaatccaccaactcaga
aaaaatgagccagagaccaaaataaaaaaaaattctaagttaataattgg
atcttcgtacatcatcacttctcaccatcttttcattgctatctaagtct
gaattaaagacaccgtcaataagacaaaaagaccaccaacagattgagaa
aggatctttacctatcccaaattagacagggaactaatatccaatatata
taaaaaactcaagaaggtagactccataaaatcaaataatcccattaaaa
aatggggctcagaactgaacaaagatttctcacccgaggaataccgaatg
gcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaat
gcaaatcaaaacaaccctgagattccacctcataccagtcagaatggcta
agatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaaga
ggaacgctcctccattgttggtgggattgcaagcttgtacaaccactctg
gaaatcagtctgggggttcctcagaaaattggacatagtactaccggaag
atccagcaatacctcttctgggcatatatccagaagatgccccaactggt
aagatggaaacatgctccactatgttcatagcagccttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331561_80331921
seq2: B6Ng01-072P03.b_68_428 (reverse)

seq1  ATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCATTCTATGAAG  50
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  ATTCCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGATG  50

seq1  CCACAATTACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAG  100
      ||||||||||||||| |||||||||||| ||||| ||  |||||| ||||
seq2  CCACAATTACTCTGAAACCTAAACCACACAAAGATCCGGCAAAGAAAGAG  100

seq1  AACTTCAGACCAATTTCCCTTATGAATATCGATGATAAAATACTCAATAA  150
      || ||||||||||||||||||||||||||| |||  ||||||||||||||
seq2  AAATTCAGACCAATTTCCCTTATGAATATCAATGCAAAAATACTCAATAA  150

seq1  AATTCTCGCTAACCAAATCCAAGAACACATCAAAACCATCATCCATCCTG  200
       || ||| | |||| |||||||||||||||||||||  ||||||||| ||
seq2  GATCCTCACAAACCGAATCCAAGAACACATCAAAACAGTCATCCATCATG  200

seq1  ACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAATATATGGAAA  250
      | |||||||| ||||| |||||||||||  ||||||||||||||||||||
seq2  ATCAAGTAGGCTTCATCCCAGGGATGCAAAGATGGTTTAATATATGGAAA  250

seq1  TTCATCAACGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACAT  300
      | ||||||| ||||||||| |||||||| |  ||||||||||||||||||
seq2  TCCATCAACATAATCCACTTTATAAACACATGCAAAGACAAAAACCACAT  300

seq1  GATCATCTCGTTAGATGCGGAGAAAGCATTTGACAAAATCTAACACCCAT  350
      ||||||||| |||||||| ||||||||||||||||||||  |||||||||
seq2  GATCATCTCATTAGATGCTGAGAAAGCATTTGACAAAATTCAACACCCAT  350

seq1  TCATGATAAAA  361
      |||||||||||
seq2  TCATGATAAAA  361

seq1: chr4_112196915_112197866
seq2: B6Ng01-072P03.g_66_1017

seq1  GAATTCTCATAGTGGGTACTACTTTGTATTTGGTAAGACATTAATAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGTGGGTACTACTTTGTATTTGGTAAGACATTAATAAGAT  50

seq1  ACTTGACTAAGAAAACAAAATAAAAAACCACCTACATGAATCTAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTAAGAAAACAAAATAAAAAACCACCTACATGAATCTAAAAAAA  100

seq1  ATAAATAAAAAAAAATAAAACTAGAAAAGAAAATTTAATTTCACTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAAAAAATAAAACTAGAAAAGAAAATTTAATTTCACTCAGAT  150

seq1  TGCAGTGATAGAACAAGTATGTCTTCCCAATAGCAGTACAGATCTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATAGAACAAGTATGTCTTCCCAATAGCAGTACAGATCTTGACA  200

seq1  CTATATGGATATGACAAAAAGCTAGGTAGAGTTGAAAGGTTTTGCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGATATGACAAAAAGCTAGGTAGAGTTGAAAGGTTTTGCAAAGC  250

seq1  TCATTGCATCTCCTACATACCAAAAAAGTTGGTTCATACCAGGGTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATCTCCTACATACCAAAAAAGTTGGTTCATACCAGGGTTTGGC  300

seq1  AGACACCCTGTGTTTGGTGTAAGATGAACATAGGAATCCACCAACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTGTGTTTGGTGTAAGATGAACATAGGAATCCACCAACTCAGA  350

seq1  AAAAATGAGCCAGAGACCAAAATAAAAAAAAATTCTAAGTTAATAATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGCCAGAGACCAAAATAAAAAAAAATTCTAAGTTAATAATTGG  400

seq1  ATCTTCGTACATCATCACTTCTCACCATCTTTTCATTGCTATCTAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGTACATCATCACTTCTCACCATCTTTTCATTGCTATCTAAGTCT  450

seq1  GAATTAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGAGAA  500

seq1  AGGATCTTTACCTATCCCAAATTAGACAGGGAACTAATATCCAATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCCAAATTAGACAGGGAACTAATATCCAATATATA  550

seq1  TAAAAAACTCAAGAAGGTAGACTCCATAAAATCAAATAATCCCATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACTCAAGAAGGTAGACTCCATAAAATCAAATAATCCCATTAAAA  600

seq1  AATGGGGCTCAGAACTGAACAAAGATTTCTCACCCGAGGAATACCGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGATTTCTCACCCGAGGAATACCGAATG  650

seq1  GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT  700

seq1  GCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTA  750

seq1  AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA  800

seq1  GGAACGCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG  850

seq1  GAAATCAGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAG  900

seq1  ATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGT  950

seq1  AA  952
      ||
seq2  AA  952