BAC Information

Click to search

BAC

Clone NameB6Ng01-072P06
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,686 - 142,777,69878,071,731 - 78,072,380
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P06.bB6Ng01-072P06.g
ACCDH890224DH890225
length920811
definitionDH890224|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P06, 5' end.DH890225|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(78,071,731 - 78,072,380)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctttaccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttag
gaattctctgtttagctctgtaccccatctctttgttttgtttaattatt
tttatattgttctctttgtttttatttgattgactttagccccaagtttg
attatttcctaccatctactcctcctgggtgtgcttggttctttttgttc
tagagctttcaggtatacttttaattacgtagcatgggaactctccagtt
tctttatgagggcatttagttctatgaacttttcttttagcactcttttt
attgtgtcccattagttcaggtatgttgtgccctcattttcatgaaattc
tataaagtttctgctttagtttataaatatagtgaatacagttgcttgag
ttttgattatttattcatcattggatctctggagaaagtctgctcggtaa
tgtcatatagtctgaaaacacttgctaggttctatttgtgatcatgttaa
cagtttctatgtctattcttttgagctccgttgcttttttggtgctgttg
tttgttattacagttgacagtgttttctggttggtaaaatgaacttgtat
tgtcttttctcttgtattctggaacagattgacacacttgggctaactct
tctttaaatatttgtaagcatttttcaatgaaaccaaccagtctggtgat
tccttttgcttgacagttgtattgtttggataacagaatgaatggggaag
atggatggaggaggggatctttatgattgggtttgagatggggcaaaaag
gatgcaaaatctgctttaggtgttctactacagattcatggttgagaatc
gagcttgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-072P06.b_45_597 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  540

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  553

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  553

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  553

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  553

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  553

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  553

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  553

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  553

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  553

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  553

seq1: chr8_78071731_78072380
seq2: B6Ng01-072P06.g_227_877

seq1  AGGTATACTTTTAATTACGTAGCATGGGAACTCTCCAGTTTCTTTATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACTTTTAATTACGTAGCATGGGAACTCTCCAGTTTCTTTATGAG  50

seq1  GGCATTTAGTTCTATGAACTTTTCTTTTAGCACTCTTTTTATTGTGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAGTTCTATGAACTTTTCTTTTAGCACTCTTTTTATTGTGTCCC  100

seq1  ATTAGTTCAGGTATGTTGTGCCCTCATTTTCATGAAATTCTATAAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCAGGTATGTTGTGCCCTCATTTTCATGAAATTCTATAAAGTTT  150

seq1  CTGCTTTAGTTTATAAATATAGTGAATACAGTTGCTTGAGTTTTGATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGTTTATAAATATAGTGAATACAGTTGCTTGAGTTTTGATTAT  200

seq1  TTATTCATCATTGGATCTCTGGAGAAAGTCTGCTCGGTAATGTCATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATCATTGGATCTCTGGAGAAAGTCTGCTCGGTAATGTCATATAG  250

seq1  TCTGAAAACACTTGCTAGGTTCTATTTGTGATCATGTTAACAGTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACACTTGCTAGGTTCTATTTGTGATCATGTTAACAGTTTCTAT  300

seq1  GTCTATTCTTTTGAGCTCCGTTGCTTTTTTGGTGCTGTTGTTTGTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCTTTTGAGCTCCGTTGCTTTTTTGGTGCTGTTGTTTGTTATTA  350

seq1  CAGTTGACAGTGTTTTCTGGTTGGTAAAATGAACTTGTATTGTCTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACAGTGTTTTCTGGTTGGTAAAATGAACTTGTATTGTCTTTTCT  400

seq1  CTTGTATTCTGGAACAGATTGACACACTTGGGCTAACTCTTCTTTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCTGGAACAGATTGACACACTTGGGCTAACTCTTCTTTAAATA  450

seq1  TTTGTAAGCATTTTTCAATGAAACCAACCAGTCTGGTGATTCCTTTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCATTTTTCAATGAAACCAACCAGTCTGGTGATTCCTTTTGCT  500

seq1  TGACAGTTGTATTGTTTGGATAACAGAATGAATGGGGAAGATGGATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTGTATTGTTTGGATAACAGAATGAATGGGGAAGATGGATGGAG  550

seq1  GAGGGGATCTTTATGATT-GGTTTGAGATGGGGCAAAAAGGAGGCAAAGT  599
      |||||||||||||||||| ||||||||||||||||||||||| ||||| |
seq2  GAGGGGATCTTTATGATTGGGTTTGAGATGGGGCAAAAAGGATGCAAAAT  600

seq1  CTGCTTTAGGTGATCTACTACAGATTTCATGG-TGAGAATCGAGCTTGGG  648
      |||||||||||| ||||||||||| ||||||| |||||||||||||||||
seq2  CTGCTTTAGGTGTTCTACTACAGA-TTCATGGTTGAGAATCGAGCTTGGG  649

seq1  TT  650
      ||
seq2  TT  651