BAC Information

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BAC

Clone NameB6Ng01-073D21
Chromosome2 (Build37)9 (Build37)
Map Location 30,149,687 - 30,150,73622,548,073 - 22,548,228
singlet/doubletsingletsinglet
Overlap geneNup188
Upstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk
Downstream geneSh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D21.bB6Ng01-073D21.g
ACCDH890430DH890431
length1,052176
definitionDH890430|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D21, 5' end.DH890431|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,149,687 - 30,150,736)(22,548,073 - 22,548,228)
sequence
gaattctcaaacaaacactaaacccacagcctcatgcgttctagacacac
agcaattaccattttagataaggccctcatgtttccatttgctaaatcca
agcgtgtcaaataagtaaggcaacgggaagcatgccttgacagccggtgt
gatgacattcaggacactgaatctctttatgtccttgcctctgggtcatt
atctgaggctgctttattatcagcatagagaggaaattttgttccaataa
ctggctctaatctcccaattatttttggactgtgaatgttatcctgttat
cagaaaaagattatatatagtccagtgcagtggtgtgggagttggtagct
atggatttaatagaatcaaagttgtttttgtagatgcattaactgttagc
aaagacataatttttaggtgtgtttatgtctctgatgggaaattcctgat
gacagctctggtgtacatagctctaacattttgtgttttagtcttttttt
tccttctctctcttttaacattacattttgtttgtttattgtacacagga
gttggggtatgtatgccatagtcaggtgtgaagctcagagggtaatttga
aggagttggtctctacttccatgtgggtcccaggagttaaactcaggttg
tgaggcttggtggcaagtaacttcacccactgagccatcttgctggccct
tgtgttttagtctttgtaaaaaagatttatttattttatttatcatgagt
acactgtagctgtcttcagacacaccaggaaagggcattggatcccatta
ccgatggttgtgagccaccaggtggttgctgggaattgaaatcctctgga
agagcagtcagtgctcttaaccactgagccatctctccagcccctgtgtt
ttagtattaatgggaaaaagttttcagttatttttttctttgggattttg
cctgtggtgtggatctgggcattggatgcatgtttgggcatgtgtgcaca
ggcttgtatgagaggcttagactggataggaacttctttgatgtgtgctc
ca
caggacagccagggttacacagagaaaccctgaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30149687_30150736
seq2: B6Ng01-073D21.b_44_1095

seq1  GAATTCTCAAACAAACACTAAACCCACAGCCTCATGCGTTCTAGACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACAAACACTAAACCCACAGCCTCATGCGTTCTAGACACAC  50

seq1  AGCAATTACCATTTTAGATAAGGCCCTCATGTTTCCATTTGCTAAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTACCATTTTAGATAAGGCCCTCATGTTTCCATTTGCTAAATCCA  100

seq1  AGCGTGTCAAATAAGTAAGGCAACGGGAAGCATGCCTTGACAGCCGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTCAAATAAGTAAGGCAACGGGAAGCATGCCTTGACAGCCGGTGT  150

seq1  GATGACATTCAGGACACTGAATCTCTTTATGTCCTTGCCTCTGGGTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTCAGGACACTGAATCTCTTTATGTCCTTGCCTCTGGGTCATT  200

seq1  ATCTGAGGCTGCTTTATTATCAGCATAGAGAGGAAATTTTGTTCCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGCTGCTTTATTATCAGCATAGAGAGGAAATTTTGTTCCAATAA  250

seq1  CTGGCTCTAATCTCCCAATTATTTTTGGACTGTGAATGTTATCCTGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTAATCTCCCAATTATTTTTGGACTGTGAATGTTATCCTGTTAT  300

seq1  CAGAAAAAGATTATATATAGTCCAGTGCAGTGGTGTGGGAGTTGGTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGATTATATATAGTCCAGTGCAGTGGTGTGGGAGTTGGTAGCT  350

seq1  ATGGATTTAATAGAATCAAAGTTGTTTTTGTAGATGCATTAACTGTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTAATAGAATCAAAGTTGTTTTTGTAGATGCATTAACTGTTAGC  400

seq1  AAAGACATAATTTTTAGGTGTGTTTATGTCTCTGATGGGAAATTCCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATAATTTTTAGGTGTGTTTATGTCTCTGATGGGAAATTCCTGAT  450

seq1  GACAGCTCTGGTGTACATAGCTCTAACATTTTGTGTTTTAGTCTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCTGGTGTACATAGCTCTAACATTTTGTGTTTTAGTCTTTTTTT  500

seq1  TCCTTCTCTCTCTTTTAACATTACATTTTGTTTGTTTATTGTACACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTCTCTTTTAACATTACATTTTGTTTGTTTATTGTACACAGGA  550

seq1  GTTGGGGTATGTATGCCATAGTCAGGTGTGAAGCTCAGAGGGTAATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTATGTATGCCATAGTCAGGTGTGAAGCTCAGAGGGTAATTTGA  600

seq1  AGGAGTTGGTCTCTACTTCCATGTGGGTCCCAGGAGTTAAACTCAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGTCTCTACTTCCATGTGGGTCCCAGGAGTTAAACTCAGGTTG  650

seq1  TGAGGCTTGGTGGCAAGTAACTTCACCCACTGAGCCATCTTGCTGGCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTGGTGGCAAGTAACTTCACCCACTGAGCCATCTTGCTGGCCCT  700

seq1  TGTGTTTTAGTCTTTGTAAAAAAGATTTATTTATTTTATTTATCATGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTAGTCTTTGTAAAAAAGATTTATTTATTTTATTTATCATGAGT  750

seq1  ACACTGTAGCTGTCTTCAGACACACCAGGAAAGGGCATTGGATCCCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTCTTCAGACACACCAGGAAAGGGCATTGGATCCCATTA  800

seq1  CCGATGGTTGTGAGCCACCAGGTGGTTGCTGGGAATTGAAATCCTCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGTTGTGAGCCACCAGGTGGTTGCTGGGAATTGAAATCCTCTGGA  850

seq1  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTGTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTGTGTT  900

seq1  TTAGTATTAATGGGAAAAAGTTTTCAGTTTATTTTTTTTCTTTGGATTTT  950
      ||||||||||||||||||||||||||| ||||||||||  || |||||||
seq2  TTAGTATTAATGGGAAAAAGTTTTCAG-TTATTTTTTTCTTTGGGATTTT  949

seq1  GCCTGTGGTGTGGATCTGTGCATTGAATGCATGTTT-GGCATGTGTGCAC  999
      |||||||||||||||||| |||||| |||||||||| |||||||||||||
seq2  GCCTGTGGTGTGGATCTGGGCATTGGATGCATGTTTGGGCATGTGTGCAC  999

seq1  AGGCTTGTATG-GAGGCCTTAGACT-GATAGGAACTTCTTTGAT-TGTGC  1046
      ||||||||||| |||| |||||||| |||||||||||||||||| |||||
seq2  AGGCTTGTATGAGAGG-CTTAGACTGGATAGGAACTTCTTTGATGTGTGC  1048

seq1  TCCA  1050
      ||||
seq2  TCCA  1052

seq1: chr9_22548073_22548228
seq2: B6Ng01-073D21.g_89_249 (reverse)

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCC--  98
      |||||||||||||||||||||||||||||||||||||| ||| |||||  
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  100

seq1  CCGTTCTTCCTCCTTTCCTTCCTTTCTCTCCTTTCTCTTTCTCTT----T  144
       | ||||| ||   || ||| |||||| | |||||| | | ||||     
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCT-TTCTTTCTTTCTTTCTTCAGGG  149

seq1  TTTCTCTGTGTA  156
      ||||||||||||
seq2  TTTCTCTGTGTA  161