BAC Information

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BAC

Clone NameB6Ng01-073K08
Chromosome2 (Build37)
Map Location 161,888,479 - 162,021,644
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073K08.bB6Ng01-073K08.g
ACCDH890710DH890711
length5111,092
definitionDH890710|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K08, 5' end.DH890711|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,021,128 - 162,021,644)(161,888,479 - 161,889,575)
sequence
tttactatcattacctaatccccacacggacacttgtcagccctcaactt
cattcttgcaatggatttgtagggtggtgtatgtctgaaggtaaatgttg
attttgaagctgtatgtaagtacataaaagaacacaaatcataactgaat
tcacaaaggtagggaacacttgaccaaaatgtgatatataactggcaccc
tgacaaccattttttttgcatactttctgcattaattctcattctcaata
atgggatttttaagagtctctcttttctgtttttgaatcttatgtaagta
gaaccatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgacc
ttattcttcattaaaaatagtatttgtgagtttagctcattgtatttggt
attctgagcattcattattttattcttgcataggtggcattgtgtgtaca
tacaaaacatgttcactctcttctaaagacttgtcttgctacctatttta
gttttactgaa
gaattcatttgctattggtatggtccacacaaagctccagtttaggactc
tggcctgtcagcttgatctgtgatagaaaacttcctctgcctatgccatt
agctcctgccatgctaagggacggtctctcctcttagtagacagcaggat
aacttttagtaagtttcattatctctgtgaatgaaaatgatcacacagac
tatctccaactttgtttattcttttctcatagttacaaaaccagccagca
aatcccctatgtgtgagaagcagcggctgatccatcagtctagtcatgcc
tggcagcagatgcatgcagctaggaggagaggtccaaactaatgttcagg
atgaacttttacagctcagtgtcctgcacaggtgtactaaggatcacaca
atgtcaaaatacccccaaagagcagagtaccccaaagctcccccctcact
caccactagatgctgcaattgccagaactctatattctagtggtcaggtg
acctctaacagcccccaggcttcaaagtctcaaagtctatggagagggct
ccacctccttcacagagcagttctccccaccagtcttccatgtctccctt
tagcacctcatcccactctttcttctttacagctggaccaggtgcagaag
caagcattgcagttaagactgtggcattatggggactagtgagcatcgtc
atagaaattgctgggtgacatctcacagaatggaatattaatgatctagc
cattaaagccagggttagcggaaggtgaggatttcatgatttcacatata
tagacaaccttagaggagcatagaaaacagaagcatgttgatgtagtggg
gtatagtgacaacacagagaaggaaggccaagagatgccaacttctgttt
gcaggaaggtcctaatacaaggatagattcatttagtgatcctgagattg
ttccctatttagggagaaggacttatcaaataagcactttggggagtttt
acccattcagaggtgctcccatggtaagagtagacctattgtaaggagga
tacttcctggaattttcattctagtggcccacgaaatctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162021128_162021644
seq2: B6Ng01-073K08.b_43_559 (reverse)

seq1  TTCAGTAAAACTAAAATAGGTAGCAAGACAAGTCTTTAGAAGAGAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAAACTAAAATAGGTAGCAAGACAAGTCTTTAGAAGAGAGTGAA  50

seq1  CATGTTTTGTATGTACACACAATGCCACCTATGCAAGAATAAAATAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGTATGTACACACAATGCCACCTATGCAAGAATAAAATAATGA  100

seq1  ATGCTCAGAATACCAAATACAATGAGCTAAACTCACAAATACTATTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGAATACCAAATACAATGAGCTAAACTCACAAATACTATTTTTA  150

seq1  ATGAAGAATAAGGTCAGAAACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATAAGGTCAGAAACACACACACACACACACACACACACACACA  200

seq1  CACTATGGTTCTACTTACATAAGATTCAAAAACAGAAAAGAGAGACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGTTCTACTTACATAAGATTCAAAAACAGAAAAGAGAGACTCTT  250

seq1  AAAAATCCCATTATTGAGAATGAGAATTAATGCAGAAAGTATGCAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCATTATTGAGAATGAGAATTAATGCAGAAAGTATGCAAAAAA  300

seq1  AATGGTTGTCAGGGTGCCAGTTATATATCACATTTTGGTCAAGTGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGTCAGGGTGCCAGTTATATATCACATTTTGGTCAAGTGTTCCC  350

seq1  TACCTTTGTGAATTCAGTTATGATTTGTGTTCTTTTATGTACTTACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGTGAATTCAGTTATGATTTGTGTTCTTTTATGTACTTACATAC  400

seq1  AGCTTCAAAATCAACATTTACCTTCAGACATACACCACCCTACAAATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAAATCAACATTTACCTTCAGACATACACCACCCTACAAATCCA  450

seq1  TTGCAAGAATGAAGTTGAGGGCTGACAAGTGTCCGTGTAGGGATTAGGTA  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCAAGAATGAAGTTGAGGGCTGACAAGTGTCCGTGTGGGGATTAGGTA  500

seq1  ATGATAGTAAAGAATTC  517
      |||||||||||||||||
seq2  ATGATAGTAAAGAATTC  517

seq1: chr2_161888479_161889575
seq2: B6Ng01-073K08.g_69_1160

seq1  GAATTCATTTGCTATTGGTATGGTCCACACAAAGCTCCAGTTTAGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCTATTGGTATGGTCCACACAAAGCTCCAGTTTAGGACTC  50

seq1  TGGCCTGTCAGCTTGATCTGTGATAGAAAACTTCCTCTGCCTATGCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTCAGCTTGATCTGTGATAGAAAACTTCCTCTGCCTATGCCATT  100

seq1  AGCTCCTGCCATGCTAAGGGACGGTCTCTCCTCTTAGTAGACAGCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCCATGCTAAGGGACGGTCTCTCCTCTTAGTAGACAGCAGGAT  150

seq1  AACTTTTAGTAAGTTTCATTATCTCTGTGAATGAAAATGATCACACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAGTAAGTTTCATTATCTCTGTGAATGAAAATGATCACACAGAC  200

seq1  TATCTCCAACTTTGTTTATTCTTTTCTCATAGTTACAAAACCAGCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAACTTTGTTTATTCTTTTCTCATAGTTACAAAACCAGCCAGCA  250

seq1  AATCCCCTATGTGTGAGAAGCAGCGGCTGATCCATCAGTCTAGTCATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTATGTGTGAGAAGCAGCGGCTGATCCATCAGTCTAGTCATGCC  300

seq1  TGGCAGCAGATGCATGCAGCTAGGAGGAGAGGTCCAAACTAATGTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAGATGCATGCAGCTAGGAGGAGAGGTCCAAACTAATGTTCAGG  350

seq1  ATGAACTTTTACAGCTCAGTGTCCTGCACAGGTGTACTAAGGATCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTTACAGCTCAGTGTCCTGCACAGGTGTACTAAGGATCACACA  400

seq1  ATGTCAAAATACCCCCAAAGAGCAGAGTACCCCAAAGCTCCCCCCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAATACCCCCAAAGAGCAGAGTACCCCAAAGCTCCCCCCTCACT  450

seq1  CACCACTAGATGCTGCAATTGCCAGAACTCTATATTCTAGTGGTCAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTAGATGCTGCAATTGCCAGAACTCTATATTCTAGTGGTCAGGTG  500

seq1  ACCTCTAACAGCCCCCAGGCTTCAAAGTCTCAAAGTCTATGGAGAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAACAGCCCCCAGGCTTCAAAGTCTCAAAGTCTATGGAGAGGGCT  550

seq1  CCACCTCCTTCACAGAGCAGTTCTCCCCACCAGTCTTCCATGTCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTTCACAGAGCAGTTCTCCCCACCAGTCTTCCATGTCTCCCTT  600

seq1  TAGCACCTCATCCCACTCTTTCTTCTTTACAGCTGGACCAGGTGCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTCATCCCACTCTTTCTTCTTTACAGCTGGACCAGGTGCAGAAG  650

seq1  CAAGCATTGCAGTTAAGACTGTGGCATTATGGGGACTAGTGAGCATCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTGCAGTTAAGACTGTGGCATTATGGGGACTAGTGAGCATCGTC  700

seq1  ATAGAAATTGCTGGGTGACATCTCACAGAATGGCAATATTAATGATCTAG  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAGAAATTGCTGGGTGACATCTCACAGAATGG-AATATTAATGATCTAG  749

seq1  CCATTAAAGCCAGGGTTAGCGGAAGGTGAGGATTTCATGATTTCACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAGCCAGGGTTAGCGGAAGGTGAGGATTTCATGATTTCACATAT  799

seq1  ATAGACAACCTTAGAGGAGCATAGAAAACAGAAGCATG-TGATGTAGTGG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAGACAACCTTAGAGGAGCATAGAAAACAGAAGCATGTTGATGTAGTGG  849

seq1  GGTAATAGTGACAACACAGAGAAGGAAGGCCACAGAGATGCCAACTTCTG  899
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGT-ATAGTGACAACACAGAGAAGGAAGGCCA-AGAGATGCCAACTTCTG  897

seq1  TTTGCAGGAAGGGTCCTAATACAAGGAATAGATTCATTTTAAGTGATCCT  949
      |||||||||| ||||||||||||||| ||||||||||||  |||||||||
seq2  TTTGCAGGAA-GGTCCTAATACAAGG-ATAGATTCATTT--AGTGATCCT  943

seq1  GAGATTGTTCCCTAATCTAAGGGAGAAAGACATATCAAAATAGCACTTT-  998
      ||||||||||||||   | |||||||| ||| |||||||  |||||||| 
seq2  GAGATTGTTCCCTA--TTTAGGGAGAAGGACTTATCAAATAAGCACTTTG  991

seq1  GTGAGTTTTACCCATTCAGAGGTGCTCCCATGTTAGAAGTAGACCCATTG  1048
      | |||||||||||||||||||||||||||||| ||  |||||||| ||||
seq2  GGGAGTTTTACCCATTCAGAGGTGCTCCCATGGTAAGAGTAGACCTATTG  1041

seq1  GAAAGAGATAACTTCCT-GAATTTTCATCTCAGTGG-CCACCAAATCTAT  1096
       || |||   ||||||| ||||||||||   ||||| |||| ||||||||
seq2  TAAGGAGGATACTTCCTGGAATTTTCATTCTAGTGGCCCACGAAATCTAT  1091

seq1  G  1097
      |
seq2  G  1092