BAC Information

Click to search

BAC

Clone NameB6Ng01-073N01
Chromosome2 (Build37)
Map Location 90,332,381 - 90,333,496
singlet/doubletsinglet
Overlap genePtprj
Upstream geneOlfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, 4933423P22Rik
Downstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073N01.bB6Ng01-073N01.g
ACCDH890832DH890833
length1,1101,246
definitionDH890832|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N01, 5' end.DH890833|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcattctgcctaactacacacttgaacgtgttagcctacatg
tccccacgccccacactaccctttcaccctgtggatttgatttgttttca
ttatattttgtgtgttccctgagtatgtgtgtggtgtgcatgtgtgtgtg
tatacatgctcattggtatgtggcatatataggtgtgtgtggatagaggg
cagaagttgagtttctatcttcgttgatcttctggtatactgaggcacgg
tttctcacttgacccaagggatgcccctgaggcatctcctcagcctttga
cttgtttttagattctatgtgcagccagacagtcactgtgcagtgatgga
atgctgtctagctgtggtcctgtaagatgaagttgactggaaagcagtac
aggtagtcttatactggctatgtgacctcctgtgaatcttgtgtttaccc
tgtttcttgtattgagaggccacattgtgacctacatcatctacatttgt
gtgaaggacactttatggtgtctttacaacagtgaaaagcctaacagcct
tgttcttagaatgtactcttaccttttaagtatcaggtgaccaggagtgg
gattgtaaaatctttctcttcctgccagtctctgtttctctaagtaacag
gctttcctttttaaaggctgaaccttcatctctttctctttccatctcct
ctttattcatttatccacttgggttggttcctgtgtcgtggctgttgtgg
acactgctgcagtatgagcggattgccattattaaggaggttccttccca
gcttaggactctccttcccaggaatgtgctgagtgtggacagacaccttt
gggatattgtccacatgatcttcagcttctttcagttacttgatgctgtg
ataagtggcatgtatcttgtttttaaccaatgtattcctgaggtaaatgc
cttggttgtgagactgctgctttggcatacagatttctcttactaacatt
atttctgaaagttcgcatcggtgatagtgacgtaacctgataggtctgaa
ccttcctttttccttttgactccttttggattggaactaaattagcccaa
aggatagagg
gaattctcacccgaggattactgaatggctgagaagcaccttaaaaaatg
ttcagcatctttaatcatcacggaaatgcaaatcaaaataaccctgagat
tccatctcacaccagtcagaatggataatataaaaaattcagatgacagc
agatgctggcaatgatgtggagaaagaggaacactcctccattgttggta
ggattgcaagcttgtacaaccactctggaaatcagtctggcaattcctca
gaaaattggacatagtactaccggaagatccagcaatacctcttctgggc
atatatccagaagatgccccaaccgataagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaatagaagaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagattgaatttgtgaaattcctaggcaa
atggttttaactggagggcatcatcctgagtgaagtaacacaatcacaaa
agaactcaaatgatatgtactcactaataagtggatattagcccagaaat
ttagtatagcgagatataaggtacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtgtgaacactttgccttttcttagaattagaaa
caatcacccatggaaggagttactgagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccaggggtccatcccataatta
gcctccaaacaatgacaccattgcatacactagcaagcgtttgttgcaag
gaccgtgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cagaagtggatgcccagtcaaactccccacctggcactgtccccggagcg
ggtcgcgccgcccgcactgcggaaggatcattaactctcgagcgtgcccc
aactcgcagcaagaacgacgctgcacagatcttctgcacacgtttattca
gccctgtttctcttctcaataaatctcatgttatatctcccttggttaat
atatctccctgtttttaaatctcctggtttttaatctcccctcgatttat
atccccccggaaccctgggccttctcacctttatctctcgagtttcaatc
acgccaagcagggcacgctcatcttacataggacgcgacggactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90332381_90333496
seq2: B6Ng01-073N01.b_43_1152 (reverse)

seq1  CCTC-ATCCTTTGGGCT-ATATAATATCAATACCAAAAGAAGTACAAAGG  48
      |||| |||||||||||| || || |  |||| ||||||| ||| |||| |
seq2  CCTCTATCCTTTGGGCTAATTTAGTTCCAAT-CCAAAAGGAGT-CAAAAG  48

seq1  AAAAAAGGAAAGTTACAGACCTATCA-GTTACGTCACTATCACAGATGCG  97
       ||||||||| ||| ||||||||||| |||||||||||||||| ||||||
seq2  GAAAAAGGAAGGTT-CAGACCTATCAGGTTACGTCACTATCACCGATGCG  97

seq1  AACCTTTCAG-AATAATGTTAGTAAGGAGAAATCTGTGATGCCCAAAAGC  146
      || ||||||| |||||||||||||| ||||||||||| |||||  |||||
seq2  AA-CTTTCAGAAATAATGTTAGTAA-GAGAAATCTGT-ATGCC--AAAGC  142

seq1  AGCAGTCTCACAACCAAGGCAATTTACCTCAGGAATACATTGGTTTAAAA  196
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  AGCAGTCTCACAACCAAGGC-ATTTACCTCAGGAATACATTGG-TTAAAA  190

seq1  ACAAGATACATGCCACTAATCACAGCATCAAGTAACTGAAAGAAGCCTGA  246
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ACAAGATACATGCCACTTATCACAGCATCAAGTAACTGAAAGAAG-CTGA  239

seq1  AGATCATGTGGACAATATCCCAAAGGTGTCTGTCCACACTCAGCACATTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTGGACAATATCCCAAAGGTGTCTGTCCACACTCAGCACATTC  289

seq1  CTGGG-AGGAGAGTCCTAAGCTGGGAAGGAACCTCCTTAATAATGGCAAT  345
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAGAGTCCTAAGCTGGGAAGGAACCTCCTTAATAATGGCAAT  339

seq1  CCGCTCATACTGCAGCAGTGTCCACAACAGCCACGACACAGGAACCAACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCATACTGCAGCAGTGTCCACAACAGCCACGACACAGGAACCAACC  389

seq1  CAAGTGGATAAATGAATAAAGAGGAGATGGAAAGAGAAAGAGATGAAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGATAAATGAATAAAGAGGAGATGGAAAGAGAAAGAGATGAAGGT  439

seq1  TCAGCCTTTAAAAAGGAAAGCCTGTTACTTAGAGAAACAGAGACTGGCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTAAAAAGGAAAGCCTGTTACTTAGAGAAACAGAGACTGGCAG  489

seq1  GAAGAGAAAGATTTTACAATCCCACTCCTGGTCACCTGATACTTAAAAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGATTTTACAATCCCACTCCTGGTCACCTGATACTTAAAAGG  539

seq1  TAAGAGTACATTCTAAGAACAAGGCTGTTAGGCTTTTCACTGTTGTAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTACATTCTAAGAACAAGGCTGTTAGGCTTTTCACTGTTGTAAAG  589

seq1  ACACCATAAAGTGTCCTTCACACAAATGTAGATGATGTAGGTCACAATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATAAAGTGTCCTTCACACAAATGTAGATGATGTAGGTCACAATGT  639

seq1  GGCCTCTCAATACAAGAAACAGGGTAAACACAAGATTCACAGGAGGTCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCAATACAAGAAACAGGGTAAACACAAGATTCACAGGAGGTCAC  689

seq1  ATAGCCAGTATAAGACTACCTGTACTGCTTTCCAGTCAACTTCATCTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTATAAGACTACCTGTACTGCTTTCCAGTCAACTTCATCTTAC  739

seq1  AGGACCACAGCTAGACAGCATTCCATCACTGCACAGTGACTGTCTGGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACAGCTAGACAGCATTCCATCACTGCACAGTGACTGTCTGGCTG  789

seq1  CACATAGAATCTAAAAACAAGTCAAAGGCTGAGGAGATGCCTCAGGGGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAATCTAAAAACAAGTCAAAGGCTGAGGAGATGCCTCAGGGGCA  839

seq1  TCCCTTGGGTCAAGTGAGAAACCGTGCCTCAGTATACCAGAAGATCAACG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGGTCAAGTGAGAAACCGTGCCTCAGTATACCAGAAGATCAACG  889

seq1  AAGATAGAAACTCAACTTCTGCCCTCTATCCACACACACCTATATATGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAAACTCAACTTCTGCCCTCTATCCACACACACCTATATATGCC  939

seq1  ACATACCAATGAGCATGTATACACACACACATGCACACCACACACATACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAATGAGCATGTATACACACACACATGCACACCACACACATACT  989

seq1  CAGGGAACACACAAAATATAATGAAAACAAATCAAATCCACAGGGTGAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACACACAAAATATAATGAAAACAAATCAAATCCACAGGGTGAAA  1039

seq1  GGGTAGTGTGGGGCGTGGGGACATGTAGGCTAACACGTTCAAGTGTGTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGTGGGGCGTGGGGACATGTAGGCTAACACGTTCAAGTGTGTAG  1089

seq1  TTAGGCAGAATGAATGAATTC  1116
      |||||||||||||||||||||
seq2  TTAGGCAGAATGAATGAATTC  1110