BAC Information

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BAC

Clone NameB6Ng01-073O23
Chromosome8 (Build37)2 (Build37)
Map Location 129,559,617 - 129,560,0055,831,194 - 5,832,117
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368
Downstream geneGabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073O23.bB6Ng01-073O23.g
ACCDH890920DH890921
length702926
definitionDH890920|Mus musculus domesticus DNA, BAC clone: B6Ng01-073O23, 5' end.DH890921|Mus musculus domesticus DNA, BAC clone: B6Ng01-073O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,559,617 - 129,560,005)(5,831,194 - 5,832,117)
sequence
gaattcaggatctctggaagagtaatcaatgctcttaaccactgagtcat
ctctccagcccacccccaccctgccccgcccccgctcctactttatatta
aattacatgtgtatacctctggatacaggtatagacatgtgaccacagag
accagaaggacacagagctggagttataggtgagtctgaagtggctgctg
agaactgaattccggtcctctgcaagagcagtatgtgctcctaagtacta
gacccgaatccactattgtttatttgagacagggtctctcacttgcctgg
gactcaccaagtaggcggggatggctgggcaatgattccccagggatcca
tttgtctcctttctctggatctattaacttcaagtaattaacattttgtc
tggtctttttttgttttaagatagggtctctctacattggcctagctgtc
ctgggactatttagaccaggctggccttgaattcacagagctctacctgc
ctctgcctcccaagtacaggtattaaaggcatgtgccaccatgcctggtt
tgtttgtttatttgttattatttaattttgtaggttgaatggaggtcctc
ctgcttgcacgcaaacatatcacaaagtaagctagctccccaggtcccaa
aaaaccattttcagtggacactaaatggcagggaagcaattttcatatag
tt
gaattcacattgcagtgagctggtttcacttagccgtagagtcttacaga
taaagtgcacatgaggctgctacaggaggtagcatgggaaagagtaaagc
acctagcaaataggaaaacgtcttgtagaatccagcggcaccccacacac
atacctgcaagaagcgctctatccgacaagatgagtgctcaggcccagct
ccatcatagccatgtggaaggaggatgacgaggccactctgcaggagcca
cttggcctctcctgggaaagcacaagacggggtttctttatgaagcagga
ggtatacagaccgggtttaggggatggaacaaaatgcaagtgtggttcct
gagcctccaaactgctttcatttcgtgcatcttctagctctgctatacta
cacttacatggaaacacccacttgaacatgcgaatctgtgacatcgaatg
ctttgggcttcggtgactgaaagactgactcaatggtaaatatcccaggg
tctcagacaatttgtggtgctctgacttcactactgaataactctgagca
aaggcaagcaactcgtgccttgctcacagcgcagcagacaccactgcaca
ctgtcctcaaaaggagagcagtagacactttgagagcagcctctgggggc
agaggaaacagctcagttttgtaaaggacttgctgtgtgagtgggagggc
ctgaggtcatcctagcactcacatgaaaagccaacagggacttgggaaac
cagggaagcagagacagggggacccctggggctttgctggccacctacct
tagcctaaccagtgagccccaggtcatgttagagatttatcttaaaacaa
ccaggtggagtcagcagtggtagcacacatctctaatcgcagctctttga
tgcagaggcagatggagcttgtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129559617_129560005
seq2: B6Ng01-073O23.b_80_334 (reverse)

seq1  AGAGACCCTGTCTCAAAGACACGAAACAAAACAAAAATGAGTAACAGCAC  50
      |||||||||||||||||           |||||| | ||           
seq2  AGAGACCCTGTCTCAAA----------TAAACAATAGTG-----------  29

seq1  TAAAAGAATACAGTCGAGTAC-CAGTCAAACCCA-ACTCTCGAGAAAGCT  98
           || |   ||| |||||  ||   | | || |||         |||
seq2  -----GATTCGGGTCTAGTACTTAG--GAGCACATACT---------GCT  63

seq1  -TTGCTGA-GCCCGTAAATTAG----AAGGAGGCA--TGGGAC---ACTA  137
       |||| || | ||| || | ||     || || ||  |  |||    |||
seq2  CTTGCAGAGGACCGGAATTCAGTTCTCAGCAGCCACTTCAGACTCACCTA  113

seq1  AACCTCGGAAGCAGGATTGTGAGATGAATGCCAGAACTCCTGGCGACACA  187
       | |||     |||   ||||   |      | |  || |||  | ||||
seq2  TAACTC-----CAGCTCTGTGTCCT-----TCTGGTCT-CTGTGGTCACA  152

seq1  TTCCATTAAGATTTTCAGATTACTTGATTTTGAGCCTGA-GTATAAAGGA  236
      |  |  ||            ||| ||      | || || ||||| |   
seq2  TGTC--TA------------TACCTG-----TATCCAGAGGTATACA---  180

seq1  GTGTGTTTCTTCTTCTTTTAT-TAAATTCTGAAGGATGGAAGGAGAGAAA  285
              | | |  ||| || ||||            | |||||     
seq2  --------CATGTAATTTAATATAAA------------GTAGGAG-----  205

seq1  GAATAGCTTTCGGAGGATGGAGATGAGACAGGGGGGAGCCAACCGATTAC  335
                ||| ||        | | ||||| || |            
seq2  ----------CGGGGG-------CGGGGCAGGGTGGGG------------  226

seq1  AGACAGCCTGTTTGGAGTAACTGCTGAGGGCTGGAGAGATGACTCAGTAG  385
                               | ||||||||||||||||||||| |
seq2  -------------------------GTGGGCTGGAGAGATGACTCAGTGG  251

seq1  TTAA  389
      ||||
seq2  TTAA  255

seq1: chr2_5831194_5832117
seq2: B6Ng01-073O23.g_72_997

seq1  GAATTCACATTGCAGTGAGCTGGTTTCACTTAGCCGTAGAGTCTTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGCAGTGAGCTGGTTTCACTTAGCCGTAGAGTCTTACAGA  50

seq1  TAAAGTGCACATGAGGCTGCTACAGGAGGTAGCATGGGAAAGAGTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCACATGAGGCTGCTACAGGAGGTAGCATGGGAAAGAGTAAAGC  100

seq1  ACCTAGCAAATAGGAAAACGTCTTGTAGAATCCAGCGGCACCCCACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCAAATAGGAAAACGTCTTGTAGAATCCAGCGGCACCCCACACAC  150

seq1  ATACCTGCAAGAAGCGCTCTATCCGACAAGATGAGTGCTCAGGCCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGCAAGAAGCGCTCTATCCGACAAGATGAGTGCTCAGGCCCAGCT  200

seq1  CCATCATAGCCATGTGGAAGGAGGATGACGAGGCCACTCTGCAGGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAGCCATGTGGAAGGAGGATGACGAGGCCACTCTGCAGGAGCCA  250

seq1  CTTGGCCTCTCCTGGGAAAGCACAAGACGGGGTTTCTTTATGAAGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTCTCCTGGGAAAGCACAAGACGGGGTTTCTTTATGAAGCAGGA  300

seq1  GGTATACAGACCGGGTTTAGGGGATGGAACAAAATGCAAGTGTGGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACAGACCGGGTTTAGGGGATGGAACAAAATGCAAGTGTGGTTCCT  350

seq1  GAGCCTCCAAACTGCTTTCATTTCGTGCATCTTCTAGCTCTGCTATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCAAACTGCTTTCATTTCGTGCATCTTCTAGCTCTGCTATACTA  400

seq1  CACTTACATGGAAACACCCACTTGAACATGCGAATCTGTGACATCGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACATGGAAACACCCACTTGAACATGCGAATCTGTGACATCGAATG  450

seq1  CTTTGGGCTTCGGTGACTGAAAGACTGACTCAATGGTAAATATCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCTTCGGTGACTGAAAGACTGACTCAATGGTAAATATCCCAGGG  500

seq1  TCTCAGACAATTTGTGGTGCTCTGACTTCACTACTGAATAACTCTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACAATTTGTGGTGCTCTGACTTCACTACTGAATAACTCTGAGCA  550

seq1  AAGGCAAGCAACTCGTGCCTTGCTCACAGCGCAGCAGACACCACTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGCAACTCGTGCCTTGCTCACAGCGCAGCAGACACCACTGCACA  600

seq1  CTGTCCTCAAAAGGAGAGCAGTAGACAC-TTGAGAGCAGCCTCTGGGGGC  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGTCCTCAAAAGGAGAGCAGTAGACACTTTGAGAGCAGCCTCTGGGGGC  650

seq1  AGAGGAAACAGCTCAG-TTTGTAAAGGACTTGCTGTGTGAGTGGGAGGGC  698
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGGAAACAGCTCAGTTTTGTAAAGGACTTGCTGTGTGAGTGGGAGGGC  700

seq1  CTGAGGTCATCCTAGCACTCACATGAAAAGCCAACAGGGACTTGGGAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCATCCTAGCACTCACATGAAAAGCCAACAGGGACTTGGGAAAC  750

seq1  CAGGGAAGCAGAGACAGGGGGACCCCTGGGGC-TTGCTGGCCACCTACCT  797
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGGAAGCAGAGACAGGGGGACCCCTGGGGCTTTGCTGGCCACCTACCT  800

seq1  TAGCCTAACCAGTGAGCCCCAGGTCATGTTAGAGA-TTATCTTAAAACAA  846
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCCTAACCAGTGAGCCCCAGGTCATGTTAGAGATTTATCTTAAAACAA  850

seq1  CAAGGTGGAGCCAGCAGTGGTAGCACACATCTCTAATCGCAGCTCTTTGA  896
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGAGTCAGCAGTGGTAGCACACATCTCTAATCGCAGCTCTTTGA  900

seq1  TGGCAGAGGCAGATGGAGCTCTGTGAGT  924
      | |||||||||||||||||| |||||||
seq2  T-GCAGAGGCAGATGGAGCT-TGTGAGT  926