BAC Information

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BAC

Clone NameB6Ng01-074P01
Chromosome2 (Build37)
Map Location 34,166,577 - 34,333,776
singlet/doubletdoublet
Overlap genePbx3, LOC665948, Mapkap1
Upstream geneRalgps1, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074P01.bB6Ng01-074P01.g
ACCDH891650DH891651
length1,1741,049
definitionDH891650|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P01, 5' end.DH891651|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,332,610 - 34,333,776)(34,166,577 - 34,167,628)
sequence
gaattcaagtcagacaaacctcaaatattatgctttcaaagccaatgtaa
aatactaaaaggaaaacatactcgcatttaagacttcttgggctgcctct
gaggtacccaaaggagatgtctgctcggctggaaagcagagacactgcat
gcaaaccattccttctgctctccatacagcgcctgataaagcatctgcag
tgctggcccagctcacagccccagctcatagccccagctcatagccccag
ctcttctgaagccctgctcaggggtttctctggggtttcctttgcaacaa
ttgcagaagagactctgggaggagcccaagcaagctgttttaaccttcca
taaactgacatttccatagaggattaagacaaacgtttcaaataaaccga
tttcctctactaaaaaacaaagtgactactgtggtgtggagagaagcaca
agaatggtgatgaagatgtacctcttctctctggacatgtggaaacagag
caaaggctacacagaggcaggcaacgtaagcccccattcctgataagatg
cacaactaagcagttacagaaaattagattttggccagttgcagcaaagc
acagggggaagcctcagctttactttctaaccaatgccagcagtcctttt
tctctgcatctctgttgactgcatgtgtgcctccttttcaatggtacttc
cagaactttggttactttttgaactgggggacaatgcaaatacctatcta
tccttgtggtccctgtgaaaggggacaaaaatccttgggcacaggaagaa
ggaaccctttttttggcccaaagaatcagggatgccacgctcaactacat
acacggtactccaaaccagccaaagctgaaagcatccttaaggaacatca
ctcgctaaaagctggagaggcagacagcacctggctttgtccagactact
ttggataccttgcctttctgcccacagtgctgtgcatatcctcacactgt
gctgcagcaaatatttgagagtgattatttgctggtactgtgagtccttc
tagcaaattagtgaacaaacaagtggttctaggagaactcattaaccttc
agctacccctctttgcacaggccttccaagtgcctgcctcccaatgtggg
cacaacaatatcatccaagtaaca
gaattctttctcttatgctttcacagaagaaaatgccagagcaacaacta
gctataatttgaaattaatcattaaatgagatcaccaataagttagataa
aaaaaaaaaaaaaaaaaaaaaaaaaaacaaacaggagcatctctgagacc
aggagaaactgaataaatttctatatttgaacaaagacaattcttaacat
aaaatgctaaagaaaaaaaaaaaaaacaagttgacaaaagaaaaaacaca
caatattatcttgcattatttccgttttttaaaaattgtcctaattatta
ctattatgctctaaaccctgtatggatgatttccccttaaaaagattctg
tttgcacagttcctaagctctgaagctgtagttagagaaacacatttgca
gtgtgtagcgatgtagctccgactagcctgccactgtcaaaatgcagggc
ccagtatctacggatgcagataaactgaggtggaggagcagtagggagct
ctataattaaactctggagctacatgttttatacattcttaaatgagctg
tgatatatagtggcgctataaaaagttatcatttattggtaatgaaaagt
aaaaattaaccacctattcaatgatttttcacctcttcagaaggctttaa
agtcgaatgcagcctgtgagatttatagtgactcatgacttttaacccac
tattttcaatatttcctctgtaagttacaaaattaatacaacttcaactg
tgattactttttatggattagtataaaataaaatttcatcgtgtgttctt
ccttggagcaactgaggttgtagtctttttcttttttttttttttttttc
ttttctttttgcaatactactaaaagactgaactaaactccaatttgttc
aatttcttagttgttatttttcaaagccaactaaatatataaatagaacc
aggtgagaattttaaatgttcccccctcctttgataataataacacatga
taagagcaaagtaaatccagacaccatattttgccattttatgcagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34332610_34333776
seq2: B6Ng01-074P01.b_40_1213 (reverse)

seq1  TGTTACCTTGGATGATATTG-TGTGCCCACA-TGGGA-GCA-GCAC-TGG  45
      ||||| |||||||||||||| |||||||||| ||||| ||| |||| |||
seq2  TGTTA-CTTGGATGATATTGTTGTGCCCACATTGGGAGGCAGGCACTTGG  49

seq1  GAGGCCTGTGC-AAGA-GGGTAGCTGAGGTTAAATGAG-TCTCCTAG-AC  91
       |||||||||| |||| |||||||||| | | |||||| |||||||| ||
seq2  AAGGCCTGTGCAAAGAGGGGTAGCTGAAGGTTAATGAGTTCTCCTAGAAC  99

seq1  CACTTGTTTGTTCACTAATTTGCTAGAAGGACTCACAGTACCCAGCAAAT  141
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTTGTTTGTTCACTAATTTGCTAGAAGGACTCACAGTA-CCAGCAAAT  148

seq1  AATCACTCTCAAATATTTGCTGCAGCACAGTGTGAGGATATGCACAGCAC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCTCAAATATTTGCTGCAGCACAGTGTGAGGATATGCACAGCAC  198

seq1  TGTGGGCAGAAAGGCAAGGTATCCAAAGTAGTCTGGACAAAGCCAGGTGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGAAAGGCAAGGTATCCAAAGTAGTCTGGACAAAGCCAGGTGC  248

seq1  TGTCTGCCTCTCCAGCTTTTAGCGAGTGATGTTCCTTAAGGATGCTTTCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCTCCAGCTTTTAGCGAGTGATGTTCCTTAAGGATGCTTTCA  298

seq1  GCTTTGGCTGGTTTGGAGTACCGTGTATGTAGTTGAGCGTGGCATCCCTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTGGTTTGGAGTACCGTGTATGTAGTTGAGCGTGGCATCCCTG  348

seq1  ATTCTTTGGGCCAAAAAAAGGGTTCCTTCTTCCTGTGCCCAAGGATTTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGGCCAAAAAAAGGGTTCCTTCTTCCTGTGCCCAAGGATTTTT  398

seq1  GTCCCCTTTCACAGGGACCACAAGGATAGATAGGTATTTGCATTGTCCCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTTCACAGGGACCACAAGGATAGATAGGTATTTGCATTGTCCCC  448

seq1  CAGTTCAAAAAGTAACCAAAGTTCTGGAAGTACCATTGAAAAGGAGGCAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAAAAGTAACCAAAGTTCTGGAAGTACCATTGAAAAGGAGGCAC  498

seq1  ACATGCAGTCAACAGAGATGCAGAGAAAAAGGACTGCTGGCATTGGTTAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGTCAACAGAGATGCAGAGAAAAAGGACTGCTGGCATTGGTTAG  548

seq1  AAAGTAAAGCTGAGGCTTCCCCCTGTGCTTTGCTGCAACTGGCCAAAATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAGCTGAGGCTTCCCCCTGTGCTTTGCTGCAACTGGCCAAAATC  598

seq1  TAATTTTCTGTAACTGCTTAGTTGTGCATCTTATCAGGAATGGGGGCTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTGTAACTGCTTAGTTGTGCATCTTATCAGGAATGGGGGCTTA  648

seq1  CGTTGCCTGCCTCTGTGTAGCCTTTGCTCTGTTTCCACATGTCCAGAGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCCTGCCTCTGTGTAGCCTTTGCTCTGTTTCCACATGTCCAGAGAG  698

seq1  AAGAGGTACATCTTCATCACCATTCTTGTGCTTCTCTCCACACCACAGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTACATCTTCATCACCATTCTTGTGCTTCTCTCCACACCACAGTA  748

seq1  GTCACTTTGTTTTTTAGTAGAGGAAATCGGTTTATTTGAAACGTTTGTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTGTTTTTTAGTAGAGGAAATCGGTTTATTTGAAACGTTTGTCT  798

seq1  TAATCCTCTATGGAAATGTCAGTTTATGGAAGGTTAAAACAGCTTGCTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTATGGAAATGTCAGTTTATGGAAGGTTAAAACAGCTTGCTTG  848

seq1  GGCTCCTCCCAGAGTCTCTTCTGCAATTGTTGCAAAGGAAACCCCAGAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCCCAGAGTCTCTTCTGCAATTGTTGCAAAGGAAACCCCAGAGA  898

seq1  AACCCCTGAGCAGGGCTTCAGAAGAGCTGGGGCTATGAGCTGGGGCTATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGAGCAGGGCTTCAGAAGAGCTGGGGCTATGAGCTGGGGCTATG  948

seq1  AGCTGGGGCTGTGAGCTGGGCCAGCACTGCAGATGCTTTATCAGGCGCTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGCTGTGAGCTGGGCCAGCACTGCAGATGCTTTATCAGGCGCTG  998

seq1  TATGGAGAGCAGAAGGAATGGTTTGCATGCAGTGTCTCTGCTTTCCAGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGCAGAAGGAATGGTTTGCATGCAGTGTCTCTGCTTTCCAGCC  1048

seq1  GAGCAGACATCTCCTTTGGGTACCTCAGAGGCAGCCCAAGAAGTCTTAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACATCTCCTTTGGGTACCTCAGAGGCAGCCCAAGAAGTCTTAAA  1098

seq1  TGCGAGTATGTTTTCCTTTTAGTATTTTACATTGGCTTTGAAAGCATAAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGTATGTTTTCCTTTTAGTATTTTACATTGGCTTTGAAAGCATAAT  1148

seq1  ATTTGAGGTTTGTCTGACTTGAATTC  1167
      ||||||||||||||||||||||||||
seq2  ATTTGAGGTTTGTCTGACTTGAATTC  1174

seq1: chr2_34166577_34167628
seq2: B6Ng01-074P01.g_64_1112

seq1  GAATTCTTTCTCTTATGCTTTCACAGAAGAAAATGCCAGAGCAACAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTTATGCTTTCACAGAAGAAAATGCCAGAGCAACAACTA  50

seq1  GCTATAATTTGAAATTAATCATTAAATGAGATCACCAATAAGTTAGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATTTGAAATTAATCATTAAATGAGATCACCAATAAGTTAGATAA  100

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAGGAGCATCTCTGAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAGGAGCATCTCTGAGACC  150

seq1  AGGAGAAACTGAATAAATTTCTATATTTGAACAAAGACAATTCTTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACTGAATAAATTTCTATATTTGAACAAAGACAATTCTTAACAT  200

seq1  AAAATGCTAAAGAAAAAAAAAAAAAACAAGTTGACAAAAGAGAAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAATGCTAAAGAAAAAAAAAAAAAACAAGTTGACAAAAGAAAAAACACA  250

seq1  CAATATTATCTTGCATTATTTCCGTTTTTTAAAAATTGTCCTAATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATCTTGCATTATTTCCGTTTTTTAAAAATTGTCCTAATTATTA  300

seq1  CTATTATGCTCTAAACCCTGTATGGATGATTTCCCCTTAGAAAGATTCTG  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATTATGCTCTAAACCCTGTATGGATGATTTCCCCTTAAAAAGATTCTG  350

seq1  TTTGCACAGTTCCTAAGCTCTGAAGCTGTAGTTAGAGAAACACATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAGTTCCTAAGCTCTGAAGCTGTAGTTAGAGAAACACATTTGCA  400

seq1  GTGTGTAGCGATGTAGCTCCGACTAGCCTGCCACTGTCAGAATGCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTGTAGCGATGTAGCTCCGACTAGCCTGCCACTGTCAAAATGCAGGGC  450

seq1  CCAGTATCTACGGATGCAGATAAACTGAGGTGGAGGAGCAGTAGGGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCTACGGATGCAGATAAACTGAGGTGGAGGAGCAGTAGGGAGCT  500

seq1  CTATAATTAAACTCTGGAGCTACATGTTTTATACATTCTTAAATGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTAAACTCTGGAGCTACATGTTTTATACATTCTTAAATGAGCTG  550

seq1  TGATATATAGTGGCGCTATAAAAAGTTATCATTTATTGGTAATGAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATAGTGGCGCTATAAAAAGTTATCATTTATTGGTAATGAAAAGT  600

seq1  AAAAATTAACCACCTATTCAATGATTTTTCACCTCTTCAGAAGGCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACCACCTATTCAATGATTTTTCACCTCTTCAGAAGGCTTTAA  650

seq1  AGTCGAATGCAGCCTGTGAGATTTATAGTGACTCATGACTTTTAACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAATGCAGCCTGTGAGATTTATAGTGACTCATGACTTTTAACCCAC  700

seq1  TATTTTCAATATTTCCTCTGTAAGTTACAAAATTAATACAACTTCAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATATTTCCTCTGTAAGTTACAAAATTAATACAACTTCAACTG  750

seq1  TGATTACTTTTTATGGATTAGTATAAAATAAAATTTCATCGTGTGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTTTTTATGGATTAGTATAAAATAAAATTTCATCGTGTGTTCTT  800

seq1  CCTTGGAGCAACTGAGGTTGTAGTCTTTTTCTTTTTTTTTTTTTTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CCTTGGAGCAACTGAGGTTGTAGTCTTTTTCTTTTTTTTTTTTTTTTTTC  850

seq1  TTTTCTTTTTTGCAATACTACTAAAAGACTGAACTAAACTCCAATTTGTT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTC-TTTTTGCAATACTACTAAAAGACTGAACTAAACTCCAATTTGTT  899

seq1  CAATTTCTTAGTTGTTATTTTTCAAAGCCAAACTAAATATATAAATAGAA  950
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  CAATTTCTTAGTTGTTATTTTTCAAAGCC-AACTAAATATATAAATAG-A  947

seq1  ACCAGGTGAGAATTTTAAAATGTT-CCCCCTCCTTTGATAATAATAACAC  999
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  ACCAGGTGAGAATTTT-AAATGTTCCCCCCTCCTTTGATAATAATAACAC  996

seq1  ATGATAGAGGCAAAGTAAATCCAGACA-CATATTTTGGCAATTTTATGCA  1048
      ||||||   |||||||||||||||||| |||||||| || ||||||||||
seq2  ATGATAAGAGCAAAGTAAATCCAGACACCATATTTT-GCCATTTTATGCA  1045

seq1  GACT  1052
      ||||
seq2  GACT  1049