BAC Information

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BAC

Clone NameB6Ng01-075I02
Chromosome2 (Build37)
Map Location 146,805,763 - 146,904,591
singlet/doubletdoublet
Overlap geneXrn2
Upstream geneInsm1, A230067G21Rik, LOC668918, Gm114
Downstream geneNkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I02.bB6Ng01-075I02.g
ACCDH892047DH892048
length1,1181,142
definitionDH892047|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I02, 5' end.DH892048|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,805,763 - 146,806,881)(146,903,468 - 146,904,591)
sequence
gaattctataaaatcattagttcatctaaacaatattattttatgaaagt
tcatctttatattgatctgcaggaaaattgcccaatagaaaatctctagt
ttccttactctcaaccccaatggtcttggttcttgggctcctaaatgtat
tcagacagaacatagcagtatatcaaatagtcgagggtttaactaaggac
gcaggcatatactctattttctttgaaattttttgtacagttttacactg
catcttggtcacacccacaccacctctacttctccccttctactctcctc
aagaaaactctcttccaagttcaggtcctcttcttttttaatgacagcca
attgctgttagctcctcagtaggggtggggcacaggaactcccccccccc
aaaccacacacactaaggaaacacttctgaaaaggagcgggctggacaga
gtagcatctgctgaggcctggcagtctttgggattataccttttcctgtt
atttcccccacccccacccccatttcattcagcatcagcgctttggggag
aagaacatgcttttcccagaagcccactttccccagaattcagtttgttt
taaaacacacaataatatgatacaataatagagagagaggttaagtatcc
ctaaagttgaaaactactcgggaaaggggtaacaacactttgccatgtgc
ttccctgtagactttgtcttgaagatgctttaagctaacctaggtagcat
gggctactatcacccactgtcccttacatcttgtttttgaagccctaagc
tggcccggctggaattgatcaccaccattagatatacatcctctttcagg
ctattgagctggtctacccagtgttccttatgtcctatttgggggaacct
gttgttctatactttcctgtaactatcctccttcctaacagaactaaatg
caggttacagtggtcacattcaaatgacacaaatgaaagagggtcctccc
ttgggtcctcaagatctgaagggttcttttggaaacaaattggtttactc
tccatttttgaaggctgtggattctaacgaatgcaagagcttgttacagg
ctcacagaaggtaggttt
gaattcatgaaactatataaagacagacacatgttccctttggaagatag
agtatttagaaggctaaatgagagacattaatagtaggattcattactat
aatgtggcatgaaggtaacacacaaaggttgacaattgctaatggctact
ctttgttccaacaataaaatgaccctgctgctttcaccatcatcagcaat
gtatttaagtttcaaaatgcctgtctattcaaaggtggattgttttcccc
acataataaaaaattaacaagtatgctttagctgtgttctaaagaaccaa
cgtcctaagtgagatggtccaaaagaaatcttactttacaatattaggct
agaaaagctgagacaaagaaagcctcagtcttcacagaaacgtaaccagc
ctaagtttgttttggtaatgaaatgaaaatagctgtgtcaactctaaaca
tgcacgtagggagtgagtgtgctcaaacgaaagggagaagatccagactg
aaggccactgtgaaatatcacttaaaatatgctgagtattgattctttag
ctaaaaaacttcaacttgaatttttaaaaatgatccctaaataagagatt
tagaagcccttaaaactaaaccacaaatatgaaatttgttaaaatgtaaa
tattcaaagatttattagtaaaatactaataaatgctgctcttgaagtgc
taatcatatcctcttaagacataccttgacactgactggctcttgacatt
taattgtaggaactgcttctgtctaagttggcactgtaaataagtttgca
caggcaccgtaagtcaagacttttcagcttgagataatcagacaccagac
accaacattttttaaagtttagctttattttttattttttttactaaagt
ccacaatttctgtaagtcaagtactttaatgaaatgttttcaaagaaatg
gttgagcaataatatgctcgtctgcaggattgtgcagcctcaatgttcat
accttattataattgttgcattaaaatcagcatagaagcttgttttgaat
ttaaccataatggaaaaacccaggacctcctatttccgtcaatggtgttt
tacaggccattattaatttcagaaccccacttgtattatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146805763_146806881
seq2: B6Ng01-075I02.b_45_1162

seq1  GAATTCTATAAAATCATTAGTTCATCTAAACAATATTATTTTATGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAATCATTAGTTCATCTAAACAATATTATTTTATGAAAGT  50

seq1  TCATCTTTATATTGATCTGCAGGAAAATTGCCCAATAGAAAATCTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTATATTGATCTGCAGGAAAATTGCCCAATAGAAAATCTCTAGT  100

seq1  TTCCTTACTCTCAACCCCAATGGTCTTGGTTCTTGGGCTCCTAAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTCTCAACCCCAATGGTCTTGGTTCTTGGGCTCCTAAATGTAT  150

seq1  TCAGACAGAACATAGCAGTATATCAAATAGTCGAGGGTTTAACTAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGAACATAGCAGTATATCAAATAGTCGAGGGTTTAACTAAGGAC  200

seq1  GCAGGCATATACTCTATTTTCTTTGAAATTTTTTGTACAGTTTTACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATATACTCTATTTTCTTTGAAATTTTTTGTACAGTTTTACACTG  250

seq1  CATCTTGGTCACACCCACACCACCTCTACTTCTCCCCTTCTACTCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGTCACACCCACACCACCTCTACTTCTCCCCTTCTACTCTCCTC  300

seq1  AAGAAAACTCTCTTCCAAGTTCAGGTCCTCTTCTTTTTTAATGACAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTCTCTTCCAAGTTCAGGTCCTCTTCTTTTTTAATGACAGCCA  350

seq1  ATTGCTGTTAGCTCCTCAGTAGGGGTGGGGCACAGGAACTCCCCCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTAGCTCCTCAGTAGGGGTGGGGCACAGGAACTCCCCCCCCCC  400

seq1  AAACCACACACACTAAGGAAACACTTCTGAAAAGGAGCGGGCTGGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACACACTAAGGAAACACTTCTGAAAAGGAGCGGGCTGGACAGA  450

seq1  GTAGCATCTGCTGAGGCCTGGCAGTCTTTGGGATTATACCTTTTCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATCTGCTGAGGCCTGGCAGTCTTTGGGATTATACCTTTTCCTGTT  500

seq1  ATTTCCCCCACCCCCACCCCCATTTCATTCAGCATCAGCGCTTTGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCCACCCCCACCCCCATTTCATTCAGCATCAGCGCTTTGGGGAG  550

seq1  AAGAACATGCTTTTCCCAGAAGCCCACTTTCCCCAGAATTCAGTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGCTTTTCCCAGAAGCCCACTTTCCCCAGAATTCAGTTTGTTT  600

seq1  TAAAACACACAATAATATGATACAATAATAGAGAGAGAGGTTAAGTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACACAATAATATGATACAATAATAGAGAGAGAGGTTAAGTATCC  650

seq1  CTAAAGTTGAAAACTACTCGGGAAAGGGGTAACAACACTTTGCCATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTGAAAACTACTCGGGAAAGGGGTAACAACACTTTGCCATGTGC  700

seq1  TTCCCTGTAGACTTTGTCTTGAAGATGCTTTAAGCTAACCTAGGTAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTAGACTTTGTCTTGAAGATGCTTTAAGCTAACCTAGGTAGCAT  750

seq1  GGGCTACTATCACCCACTGTCCCTTACATCTTGTTTTTGAAGCCCTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTATCACCCACTGTCCCTTACATCTTGTTTTTGAAGCCCTAAGC  800

seq1  TGGCCCGGCTGGAATTGATCACCACCATTAGATATACATCCTCTTTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGGCTGGAATTGATCACCACCATTAGATATACATCCTCTTTCAGG  850

seq1  CTATTGAGCTGGTCTACCCAGTGTTCCTTATGTCCTATTTGGGGGAACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGCTGGTCTACCCAGTGTTCCTTATGTCCTATTTGGGGGAACCT  900

seq1  GTTGTTCTATAC-TTCCTGTAACTATCCTCCTTCCTAACAGAACTAAATG  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTATACTTTCCTGTAACTATCCTCCTTCCTAACAGAACTAAATG  950

seq1  CAGGTTACAGGTGTCACATTCAAATGACACAAATGAAAGAGGGT-CTCCC  998
      ||||||||||  |||||||||||||||||||||||||||||||| |||||
seq2  CAGGTTACAGTGGTCACATTCAAATGACACAAATGAAAGAGGGTCCTCCC  1000

seq1  TTGGG-CCTCCAGATCTAGAAGGGT--CTTTGGAGACAAATTGGTTTACC  1045
      ||||| |||| |||||| |||||||   |||||| ||||||||||||| |
seq2  TTGGGTCCTCAAGATCT-GAAGGGTTCTTTTGGAAACAAATTGGTTTA-C  1048

seq1  TCTTCCATTTTTGAGGGCTGTGGGAATCTAACAGATGCAAAGGAGCTTGT  1095
      || ||||||||||| |||||| ||| ||||||  ||||||  ||||||||
seq2  TC-TCCATTTTTGAAGGCTGT-GGATTCTAACGAATGCAA--GAGCTTGT  1094

seq1  TACAGGGCTCACAGAA-GTAGGTTT  1119
      |||| ||||||||||| ||||||||
seq2  TACA-GGCTCACAGAAGGTAGGTTT  1118

seq1: chr2_146903468_146904591
seq2: B6Ng01-075I02.g_70_1211 (reverse)

seq1  GGCATAATAC-AGTGGG--TCTG-AATTTATTATTGCTTGT-AAACACAT  45
      |||||||||| ||||||  |||| |||| || || || ||| ||||||  
seq2  GGCATAATACAAGTGGGGTTCTGAAATTAATAATGGCCTGTAAAACACCA  50

seq1  TTGACGAAATTAGGA-GTCCTGGGTTTT--CATTATGGTTAAAATTCAAA  92
      |||||| || ||||| ||||||||||||  |||||||||| |||||||||
seq2  TTGACGGAAATAGGAGGTCCTGGGTTTTTCCATTATGGTT-AAATTCAAA  99

seq1  AC-AGC-TCTATGCTGATTTTAATGC-ACATTAATAATTAGGTATGGACA  139
      || ||| ||||||||||||||||||| ||| | ||||| ||||||| |||
seq2  ACAAGCTTCTATGCTGATTTTAATGCAACAATTATAATAAGGTATGAACA  149

seq1  TTGA-GCTGCAC-ATTCTGCAGACGAGCATA-TATTGCTCAA-CATTTCT  185
      |||| ||||||| || ||||||||||||||| |||||||||| |||||||
seq2  TTGAGGCTGCACAATCCTGCAGACGAGCATATTATTGCTCAACCATTTCT  199

seq1  TTGAAAACATTTCATTAAAGTACTTGACTTACAGAAATTTGTGGACTTTA  235
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAAAACATTTCATTAAAGTACTTGACTTACAGAAA-TTGTGGACTTTA  248

seq1  GTAAAAAAA--TAAAAATAAAGCTAAACTTT-AAAAATGTTGGTGTCTGG  282
      |||||||||   ||||||||||||||||||| ||||||||||||||||||
seq2  GTAAAAAAAATAAAAAATAAAGCTAAACTTTAAAAAATGTTGGTGTCTGG  298

seq1  TGTCTGATTATCTC-AGCTG-AAAGTCTTGACTTACGGTGCCTGTGCAAA  330
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGTCTGATTATCTCAAGCTGAAAAGTCTTGACTTACGGTGCCTGTGCAAA  348

seq1  CTTATTTACAGTGCCAACTTAGACAGAAGCAGTTCCTACAATTAAATGTC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTACAGTGCCAACTTAGACAGAAGCAGTTCCTACAATTAAATGTC  398

seq1  AAGAGCCAGTCAGTGTCAAGGTATGTCTTAAGAGGATATGATTAGCACTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGTCAGTGTCAAGGTATGTCTTAAGAGGATATGATTAGCACTT  448

seq1  CAAGAGCAGCATTTATTAGTATTTTACTAATAAATCTTTGAATATTTACA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGCATTTATTAGTATTTTACTAATAAATCTTTGAATATTTACA  498

seq1  TTTTAACAAATTTCATATTTGTGGTTTAGTTTTAAGGGCTTCTAAATCTC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAATTTCATATTTGTGGTTTAGTTTTAAGGGCTTCTAAATCTC  548

seq1  TTATTTAGGGATCATTTTTAAAAATTCAAGTTGAAGTTTTTTAGCTAAAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGGGATCATTTTTAAAAATTCAAGTTGAAGTTTTTTAGCTAAAG  598

seq1  AATCAATACTCAGCATATTTTAAGTGATATTTCACAGTGGCCTTCAGTCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATACTCAGCATATTTTAAGTGATATTTCACAGTGGCCTTCAGTCT  648

seq1  GGATCTTCTCCCTTTCGTTTGAGCACACTCACTCCCTACGTGCATGTTTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCTCCCTTTCGTTTGAGCACACTCACTCCCTACGTGCATGTTTA  698

seq1  GAGTTGACACAGCTATTTTCATTTCATTACCAAAACAAACTTAGGCTGGT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACACAGCTATTTTCATTTCATTACCAAAACAAACTTAGGCTGGT  748

seq1  TACGTTTCTGTGAAGACTGAGGCTTTCTTTGTCTCAGCTTTTCTAGCCTA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTCTGTGAAGACTGAGGCTTTCTTTGTCTCAGCTTTTCTAGCCTA  798

seq1  ATATTGTAAAGTAAGATTTCTTTTGGACCATCTCACTTAGGACGTTGGTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAAGTAAGATTTCTTTTGGACCATCTCACTTAGGACGTTGGTT  848

seq1  CTTTAGAACACAGCTAAAGCATACTTGTTAATTTTTTATTATGTGGGGAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAACACAGCTAAAGCATACTTGTTAATTTTTTATTATGTGGGGAA  898

seq1  AACAATCCACCTTTGAATAGACAGGCATTTTGAAACTTAAATACATTGCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCACCTTTGAATAGACAGGCATTTTGAAACTTAAATACATTGCT  948

seq1  GATGATGGTGAAAGCAGCAGGGTCATTTTATTGTTGGAACAAAGAGTAGC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTGAAAGCAGCAGGGTCATTTTATTGTTGGAACAAAGAGTAGC  998

seq1  CATTAGCAATTGTCAACCTTTGTGTGTTACCTTCATGCCACATTATAGTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCAATTGTCAACCTTTGTGTGTTACCTTCATGCCACATTATAGTA  1048

seq1  ATGAATCCTACTATTAATGTCTCTCATTTAGCCTTCTAAATACTCTATCT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCTACTATTAATGTCTCTCATTTAGCCTTCTAAATACTCTATCT  1098

seq1  TCCAAAGGGAACATGTGTCTGTCTTTATATAGTTTCATGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGGAACATGTGTCTGTCTTTATATAGTTTCATGAATTC  1142