BAC Information

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BAC

Clone NameB6Ng01-075M04
Chromosome2 (Build37)
Map Location 8,393,100 - 8,495,457
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream geneLOC100040710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M04.bB6Ng01-075M04.g
ACCDH892225DH892226
length1,1271,100
definitionDH892225|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M04, 5' end.DH892226|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,393,100 - 8,394,234)(8,494,337 - 8,495,457)
sequence
gaattcttagttagctacagataatttcatgattttgtgaatcttagtat
gcttcagccctttcctagtctacaagacagagaggtagttgctgttgatt
atttattattgtttttatctctaaaaacattcactactaacaccacgttg
ttatgccatcactttgtgtttcagagtacactaagttttcatgaattctt
atataccacaagaatttctctattagttttggataaatattgtttatgct
ttctaaccagcaaagatgaggtcccctttagtactccccctgcttgcaag
aaatcagcactgttagagctgcagaattcttcgtttctaaaggactcaaa
gaaatgtccaatgattttaaatttcactgaactgatggtatgtgatgtag
agtgtcttttcctgtcaataattgctatctgtatatgtaaaaacaatcat
tgcaatagtgcattgttgaaagttgcataaatattgtcaaggacttaaga
aacttttattgcaaataattaaatttctagatttaaactatgtgaactac
aagtaactgatttttctacctaaggtagcttaaggcagagtgcatacata
ttcaaatgttcactaacttcaaaagtaaacaaatatcttttacttttttc
tttgccaagatttatgttttaatttttgtctttatcaaacagtttcttga
aagcttatgtggaaattctaacaggagggagtagctattcatattccatt
agccaaagaacctctatcagggaatgtcattctttgcaacttatgaacac
ctgatggagcagaaagggcaaggacaccccacccacctagccatccaagc
cagttgaatcagcccagcctacaatgggatgaaagatattctagtcagcc
acccttatatctaaatgttttctatgtatgttgcagaatgaatccaaaaa
catatgcatgtactcatgctctagtctgtatcttcagcactaacctctaa
actgggaaattcttgaccaaagtttaaggttatagatgcaaatacataat
aatatagtgaagaagaaaaccaggaggagaaagaaggggagaagagagag
aggaggaaagatgaaagaaagagaaga

gaattcaagatgcataactagtggagtcataattccagcactcatgggct
ttctgaaagaaataaaatatacaatctcattaaatctgttgtttaggttg
ttgtgatagccacattgcttgtatatttgtacaccatgatcagtttaaga
agattctttctattttaaaacatcttccacaatttcatctatatttcata
gcaagcaatcacttcggagccaatttctatttttaccatgttgatgtgaa
catgttaacaattacagataacatttaaaatctcccgttcctctggtttc
tagttgagatctacagcaaacaagacagaaggggtacagtgaatacttaa
tattctctaaattttcatccaagtatggttcagagactggttatgcatct
tttcaccagggctgtgaaatcatcaggaaagttgtaataccttatctgtc
aatgttattcaccatttgtccttgatttctctaatgcctactaatttaaa
aacacttcccttactaagtgtattcaattgtcagtaatctttcctttttc
tcataacagtgtgtttagcaataacttttactaaaaattgcctctcgaaa
tagatttcccattatttctagaaatgagttgcctctgttttaaaattctt
ggtaaagtcgggcatggtggtgcacgcctttaatcccagcactggggagg
cagaggcagggggatttctgatttcgaggccagcctggtcttcaaagtga
gttccaggacagccagggctattcagagaaaacctgtctcaaaaaaaaaa
atcttggtaaaaattaaaccttggcatgtagagacacacacacacacaca
cacacacacacacacacacacacacacacacacaccctctcaaaaattct
acctagttagtgaacaaaacttaagagaggcagtctgtctgaaacaagtg
atctgatgttcatctgtggtgagatagtgatttcatcccaaaatgaaata
acagaaagttgaaatattttgtgtctgagtgtattgaagagaaaaagtaa
tatttttttgtcttataaaaaccaagctatgtacagggagtaaccatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_8393100_8394234
seq2: B6Ng01-075M04.b_42_1168

seq1  GAATTCTTAGTTAGCTACAGATAATTTCATGATTTTGTGAATCTTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTAGCTACAGATAATTTCATGATTTTGTGAATCTTAGTAT  50

seq1  GCTTCAGCCCTTTCCTAGTCTACAAGACAGAGAGGTAGTTGCTGTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCCCTTTCCTAGTCTACAAGACAGAGAGGTAGTTGCTGTTGATT  100

seq1  ATTTATTATTGTTTTTATCTCTAAAAACATTCACTACTAACACCACGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTGTTTTTATCTCTAAAAACATTCACTACTAACACCACGTTG  150

seq1  TTATGCCATCACTTTGTGTTTCAGAGTACACTAAGTTTTCATGAATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCATCACTTTGTGTTTCAGAGTACACTAAGTTTTCATGAATTCTT  200

seq1  ATATACCACAAGAATTTCTCTATTAGTTTTGGATAAATATTGTTTATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCACAAGAATTTCTCTATTAGTTTTGGATAAATATTGTTTATGCT  250

seq1  TTCTAACCAGCAAAGATGAGGTCCCCTTTAGTACTCCCCCTGCTTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCAGCAAAGATGAGGTCCCCTTTAGTACTCCCCCTGCTTGCAAG  300

seq1  AAATCAGCACTGTTAGAGCTGCAGAATTCTTCGTTTCTAAAGGACTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCACTGTTAGAGCTGCAGAATTCTTCGTTTCTAAAGGACTCAAA  350

seq1  GAAATGTCCAATGATTTTAAATTTCACTGAACTGATGGTATGTGATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCAATGATTTTAAATTTCACTGAACTGATGGTATGTGATGTAG  400

seq1  AGTGTCTTTTCCTGTCAATAATTGCTATCTGTATATGTAAAAACAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTTTCCTGTCAATAATTGCTATCTGTATATGTAAAAACAATCAT  450

seq1  TGCAATAGTGCATTGTTGAAAGTTGCATAAATATTGTCAAGGACTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTGCATTGTTGAAAGTTGCATAAATATTGTCAAGGACTTAAGA  500

seq1  AACTTTTATTGCAAATAATTAAATTTCTAGATTTAAACTATGTGAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATTGCAAATAATTAAATTTCTAGATTTAAACTATGTGAACTAC  550

seq1  AAGTAACTGATTTTTCTACCTAAGGTAGCTTAAGGCAGAGTGCATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTGATTTTTCTACCTAAGGTAGCTTAAGGCAGAGTGCATACATA  600

seq1  TTCAAATGTTCACTAACTTCAAAAGTAAACAAATATCTTTTACTTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTTCACTAACTTCAAAAGTAAACAAATATCTTTTACTTTTTTC  650

seq1  TTTGCCAAGATTTATGTTTTAATTTTTGTCTTTATCAAACAGTTTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAGATTTATGTTTTAATTTTTGTCTTTATCAAACAGTTTCTTGA  700

seq1  AAGCTTATGTGGAAATTCTAACAGGAGGGAGTAGCTATTCATATTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTATGTGGAAATTCTAACAGGAGGGAGTAGCTATTCATATTCCATT  750

seq1  AGCCAAAGAACCTCTATCAGGGAATGTCATTCTTTGCAACTTATGAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGAACCTCTATCAGGGAATGTCATTCTTTGCAACTTATGAACAC  800

seq1  CTGATGGAGCAGAAAGGGCAAGGACACCCCACCCACCTAGCCATCCAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGCAGAAAGGGCAAGGACACCCCACCCACCTAGCCATCCAAGC  850

seq1  CAGTTGAATCAGCCCAGCCTACAATGGGATGAAAGATATTCTAGTCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAATCAGCCCAGCCTACAATGGGATGAAAGATATTCTAGTCAGCC  900

seq1  ACCCTTATATCTAAATGTTTTCTATGTATGTTGCAGGAATGAATCCAAAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCCTTATATCTAAATGTTTTCTATGTATGTTGCA-GAATGAATCCAAAA  949

seq1  ACATATGCATGTACTCATGCTCTAGTCTGTATCTTCAGCACTAACCTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCATGTACTCATGCTCTAGTCTGTATCTTCAGCACTAACCTCTA  999

seq1  AACTGGGAAATTCTTGACCAAAGTTTAAGGTTATAGATGCAAATACATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAAATTCTTGACCAAAGTTTAAGGTTATAGATGCAAATACATAA  1049

seq1  T-ATATAGTGAAGAAGAAAACCAGGAGGAG-AAGAAGGGGAAGAAGAGGA  1098
      | |||||||||||||||||||||||||||| ||||||||| |||||||  
seq2  TAATATAGTGAAGAAGAAAACCAGGAGGAGAAAGAAGGGG-AGAAGAGAG  1098

seq1  AGAAGAAGGAGGAAAAGAAGGAGAAGAAAGAGGAAGA  1135
      ||    |||||| ||||| |   |||||||| |||||
seq2  AG----AGGAGG-AAAGATG--AAAGAAAGA-GAAGA  1127


seq1: chr2_8494337_8495457
seq2: B6Ng01-075M04.g_68_1167 (reverse)

seq1  GCCATGGGTCCCTCCCTGTACATGCCTTGGTTTTATAAAAAAAAAAAAAA  50
      ||||| |||  ||||||||||||  |||||||||          | || |
seq2  GCCAT-GGTTACTCCCTGTACATAGCTTGGTTTT---------TATAAGA  40

seq1  AAAAAAAAAATTACTTTTTCCTCTTCAAATACACTCAGAACACAAAATAT  100
       ||||||| |||||||||| |||||| ||||||||||| |||||||||| 
seq2  CAAAAAAATATTACTTTTT-CTCTTC-AATACACTCAG-ACACAAAATA-  86

seq1  TTTCAACTTTCTGTTATTTCATTTTGGGATGAAATCACTATTCTCACCAC  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCAACTTTCTGTTATTTCATTTTGGGATGAAATCACTA-TCTCACCAC  135

seq1  AGAATGAACATCAGAATCACTTGTTTCAGACAGACTGCCTCTCCTTAAGT  200
      || ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AG-ATGAACATCAG-ATCACTTGTTTCAGACAGACTGCCTCT-CTTAAGT  182

seq1  TTTGTTCACTAACTAGGTAGAATTTTTGGAGGAGGGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TTTGTTCACTAACTAGGTAGAATTTTTG--AGAGGGTGTGTGTGTGTGTG  230

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCTCTACATGCCA  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-TGTCTCTACATGCCA  279

seq1  AGGTTTAATTTTTACCAAGATTTTTTTTTTTGAGACAGGTTTTCTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAATTTTTACCAAGATTTTTTTTTTTGAGACAGGTTTTCTCTGAA  329

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTTGAAGACCAGGCTGGCCTCGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTGAAGACCAGGCTGGCCTCGAAA  379

seq1  TCAGAAATCCCCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCCCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGC  429

seq1  ACCACCATGCCCGACTTTACCAAGAATTTTAAAACAGAGGCAACTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGCCCGACTTTACCAAGAATTTTAAAACAGAGGCAACTCATTT  479

seq1  CTAGAAATAATGGGAAATCTATTTCGAGAGGCAATTTTTAGTAAAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATAATGGGAAATCTATTTCGAGAGGCAATTTTTAGTAAAAGTTA  529

seq1  TTGCTAAACACACTGTTATGAGAAAAAGGAAAGATTACTGACAATTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAACACACTGTTATGAGAAAAAGGAAAGATTACTGACAATTGAAT  579

seq1  ACACTTAGTAAGGGAAGTGTTTTTAAATTAGTAGGCATTAGAGAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGTAAGGGAAGTGTTTTTAAATTAGTAGGCATTAGAGAAATCAA  629

seq1  GGACAAATGGTGAATAACATTGACAGATAAGGTATTACAACTTTCCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATGGTGAATAACATTGACAGATAAGGTATTACAACTTTCCTGAT  679

seq1  GATTTCACAGCCCTGGTGAAAAGATGCATAACCAGTCTCTGAACCATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACAGCCCTGGTGAAAAGATGCATAACCAGTCTCTGAACCATACT  729

seq1  TGGATGAAAATTTAGAGAATATTAAGTATTCACTGTACCCCTTCTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAATTTAGAGAATATTAAGTATTCACTGTACCCCTTCTGTCTT  779

seq1  GTTTGCTGTAGATCTCAACTAGAAACCAGAGGAACGGGAGATTTTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTAGATCTCAACTAGAAACCAGAGGAACGGGAGATTTTAAATG  829

seq1  TTATCTGTAATTGTTAACATGTTCACATCAACATGGTAAAAATAGAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAATTGTTAACATGTTCACATCAACATGGTAAAAATAGAAATT  879

seq1  GGCTCCGAAGTGATTGCTTGCTATGAAATATAGATGAAATTGTGGAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGAAGTGATTGCTTGCTATGAAATATAGATGAAATTGTGGAAGAT  929

seq1  GTTTTAAAATAGAAAGAATCTTCTTAAACTGATCATGGTGTACAAATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATAGAAAGAATCTTCTTAAACTGATCATGGTGTACAAATATA  979

seq1  CAAGCAATGTGGCTATCACAACAACCTAAACAACAGATTTAATGAGATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATGTGGCTATCACAACAACCTAAACAACAGATTTAATGAGATTG  1029

seq1  TATATTTTATTTCTTTCAGAAAGCCCATGAGTGCTGGAATTATGACTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATTTCTTTCAGAAAGCCCATGAGTGCTGGAATTATGACTCCA  1079

seq1  CTAGTTATGCATCTTGAATTC  1121
      |||||||||||||||||||||
seq2  CTAGTTATGCATCTTGAATTC  1100


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