BAC Information

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BAC

Clone NameB6Ng01-076M05
Chromosome2 (Build37)
Map Location 7,052,762 - 7,204,285
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076M05.bB6Ng01-076M05.g
ACCDH892934DH892935
length5881,204
definitionDH892934|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M05, 5' end.DH892935|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,052,762 - 7,053,355)(7,203,073 - 7,204,285)
sequence
ctggtggcaaggattccataagagagactatagggtgataacacacagaa
aaagaccttgagtctcctgttgaatgcattaataagggagcagggacagc
agggttgacagtgaagggtcaccactggaagggctacactagtgttttct
atactgctgtaatctctgattcattttctgtccttcaataagtaacctgc
cacttgcccacgctggatatagaacttgaagcaaactcaatgtcacatac
aaaaaggggaggtgaaagctggcggggtggggaatttgctgggtagaaga
gttttaatggtgtgtgtgtgcatgagagagagagagagagagagagagag
aaattggaatgaggtaaaattagtcaaattcatttaaaaatctatgaaat
tgtcaaagcaatttcaataagtggtgtgtatatgtgtgtgtctgtgtata
taaatagaaaagccaacatttaacaggcaatactaattgcttttttttaa
ttggatattttatttacatttcaaatgttatcttctttcccagtttccct
gcccctggaaaccccctatcccatccctcctctctccg

gaattcaagccaagtgaaatttccatatgcgtgttgcttagatgaaaaca
agatgtttatatgctctgtgcaatttccaggtctttatatctgaaagcaa
aatcctgttttatgatgtcatttgaaagataagaagggactagtccagaa
aatgttgccagtaccctctttcaagtatgtcccttaaggaggtctatcgg
gagaccacacaactgaaagtaagtagtgatgcactctactgaaattgaca
cttggatctatcatgtcatcttctctgactttaaaataattggcttagct
gggtgtggtggcacaagcctttaatcccagcactggggaggcagaggcag
gtggatttctgagttcaaagtcagcctggtctacaaagtgagttccagga
cagacagggctatacagagaaaccctgtctcaaaaaccaaaataaataaa
taaataaataaataaataaataaataaataaataaataattggcttagct
ggtaaattccaatcttgcctttatcaaagaacaagataaagtatagattc
ctaagtctctctccagtatgactaaattgaaatttcttttttttaaaata
atttttattacatattttcctcaattacatttccaatgctatcccaaaaa
gtcccccataccctcccccccacttccctacccacccattcccatatttt
ggccctggcgttcccctgtactggggcatatacagtttgtgtgtccaatg
ggcctctctttccagtgatggccgactgatacatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccacctatagggttg
cagatccctttagcaatgatgtgttatgaatttacctcttattcaagctt
tcttgagagttcttacaagccagaatacagtgcagattgcatgggacagc
tagtgcactttgatagtcattgctcctcttgctgttccatctgggatcta
agagtaccagcagattgacccaggaacaggaatggaaccactggaagaag
aaaactgtttgccaaagattaaaaagggaatacaagcattaatagtagcg
aggccctgctcttggctttcaatttggctcagctatttaatttacagcca
cttataatgtccatacactagcacgatttctttgtgcgcttaaatctccc
aaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7052762_7053355
seq2: B6Ng01-076M05.b_49_642

seq1  GAATTCCTGGTGGCAAGGATTCCATAAGAGAGACTATAGGGTGATAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGGCAAGGATTCCATAAGAGAGACTATAGGGTGATAACAC  50

seq1  ACAGAAAAAGACCTTGAGTCTCCTGTTGAATGCATTAATAAGGGAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGACCTTGAGTCTCCTGTTGAATGCATTAATAAGGGAGCAGG  100

seq1  GACAGCAGGGTTGACAGTGAAGGGTCACCACTGGAAGGGCTACACTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGGTTGACAGTGAAGGGTCACCACTGGAAGGGCTACACTAGTG  150

seq1  TTTTCTATACTGCTGTAATCTCTGATTCATTTTCTGTCCTTCAATAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATACTGCTGTAATCTCTGATTCATTTTCTGTCCTTCAATAAGTA  200

seq1  ACCTGCCACTTGCCCACGCTGGATATAGAACTTGAAGCAAACTCAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCACTTGCCCACGCTGGATATAGAACTTGAAGCAAACTCAATGTC  250

seq1  ACATACAAAAAGGGGAGGTGAAAGCTGGCGGGGTGGGGAATTTGCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAAAAGGGGAGGTGAAAGCTGGCGGGGTGGGGAATTTGCTGGGT  300

seq1  AGAAGAGTTTTAATGGTGTGTGTGTGCATGAGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTTTTAATGGTGTGTGTGTGCATGAGAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGAAATTGGAATGAGGTAAAATTAGTCAAATTCATTTAAAAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATTGGAATGAGGTAAAATTAGTCAAATTCATTTAAAAATCTA  400

seq1  TGAAATTGTCAAAGCAATTTCAATAAGTGGTGTGTATATGTGTGTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGTCAAAGCAATTTCAATAAGTGGTGTGTATATGTGTGTGTCTG  450

seq1  TGTATATAAATAGAAAAGCCAACATTTAACAGGCAATACTAATTGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAAATAGAAAAGCCAACATTTAACAGGCAATACTAATTGCTTTT  500

seq1  TTTTAATTGGATATTTTATTTACATTTCAAATGTTATCTTCTTTCCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGGATATTTTATTTACATTTCAAATGTTATCTTCTTTCCCAGT  550

seq1  TTCCCTGCCCCTGGAAACCCCCTATCCCATCCCTCCTCTCTCCG  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCCCTGGAAACCCCCTATCCCATCCCTCCTCTCTCCG  594


seq1: chr2_7203073_7204285
seq2: B6Ng01-076M05.g_69_1272 (reverse)

seq1  GTTTGGGAGATTCTAGGCTGCACAAAGAGAATATCCTGCTTAGTGTTATG  50
      |||||||||||| || || ||||||||   | ||| ||| ||||| ||||
seq2  GTTTGGGAGATT-TAAGC-GCACAAAG---AAATCGTGC-TAGTG-TATG  43

seq1  GACATTTTAATAGTGCTG-ATAATAAATAGCTTTGAGCAAATATGAAAGG  99
      |||||| |||  | |||| | | ||||||||  ||||| ||  |||||| 
seq2  GACATTATAAGTG-GCTGTAAATTAAATAGC--TGAGCCAAATTGAAAGC  90

seq1  CAAGAGCA-GGCCTCTGCTACTATTCATGCTTTGTATTTCCTTTCTAATC  148
      |||||||| |||||| ||||||||| |||| ||||||| ||||| |||||
seq2  CAAGAGCAGGGCCTC-GCTACTATTAATGC-TTGTATTCCCTTTTTAATC  138

seq1  TAT-GCTAACAG-TCTCTTCTTCCAGTGGTTTCCATTCCTGTTCCTGTGT  196
      | | || ||||| | |||||||||||||| ||||||||||||||||| ||
seq2  TTTGGCAAACAGTTTTCTTCTTCCAGTGG-TTCCATTCCTGTTCCTGGGT  187

seq1  CAATCTGCTGGTACTCTTAGATCCCAGATGGAACAGCAAAGAGGAGCAAT  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAATCTGCTGGTACTCTTAGATCCCAGATGGAACAGC-AAGAGGAGCAAT  236

seq1  GACTATC-AAGTGCACTAGCTGTCCCATGCAATCTGCACTGTATTCTGGC  295
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCAAAGTGCACTAGCTGTCCCATGCAATCTGCACTGTATTCTGGC  286

seq1  TTGTAAGAACTCTCAAGAAAGCTTGAATAAGAGGTAAATTCATGAACACA  345
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGTAAGAACTCTCAAGAAAGCTTGAATAAGAGGTAAATTCAT-AACACA  335

seq1  TCATTGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  385

seq1  AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAGTCGGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAGTCGGCC  435

seq1  ATCACTGGAAAGAGAGGCCCATTGGACACACAAACTGTATATGCCCCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGAAAGAGAGGCCCATTGGACACACAAACTGTATATGCCCCAGT  485

seq1  ACAGGGGAACGCCAGGGCCAAAATATGGGAATGGGTGGGTAGGGAAGTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAACGCCAGGGCCAAAATATGGGAATGGGTGGGTAGGGAAGTGG  535

seq1  GGGGGAGGGTATGGGGGAC-TTTTGGGATAGCATTGGAAATGTAATTGAG  594
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGGGAGGGTATGGGGGACTTTTTGGGATAGCATTGGAAATGTAATTGAG  585

seq1  GAAAATATGTAATAAAAATTATTTTAAAAAAAAGAAATTTCAATTTAGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTAATAAAAATTATTTTAAAAAAAAGAAATTTCAATTTAGTC  635

seq1  ATACTGGAGAGAGACTTAGGAATCTATACTTTATCTTGTTCTTTGATAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGAGAGAGACTTAGGAATCTATACTTTATCTTGTTCTTTGATAAA  685

seq1  GGCAAGATTGGAATTTACCAGCTAAGCCAATTATTTATTTATTTATTTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATTGGAATTTACCAGCTAAGCCAATTATTTATTTATTTATTTAT  735

seq1  TTATTTATTTATTTATTTATTTATTTATTTTGGTTTTTGAGACAGGGTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTTGGTTTTTGAGACAGGGTTT  785

seq1  CTCTGTATAGCCCTGTCTGTCCTGGAACTCACTTTGTAGACCAGGCTGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGTCTGTCCTGGAACTCACTTTGTAGACCAGGCTGAC  835

seq1  TTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAA  885

seq1  GGCTTGTGCCACCACACCCAGCTAAGCCAATTATTTTAAAGTCAGAGAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCCACCACACCCAGCTAAGCCAATTATTTTAAAGTCAGAGAAG  935

seq1  ATGACATGATAGATCCAAGTGTCAATTTCAGTAGAGTGCATCACTACTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGATAGATCCAAGTGTCAATTTCAGTAGAGTGCATCACTACTTA  985

seq1  CTTTCAGTTGTGTGGTCTCCCGATAGACCTCCTTAAGGGACATACTTGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTGTGTGGTCTCCCGATAGACCTCCTTAAGGGACATACTTGAA  1035

seq1  AGAGGGTACTGGCAACATTTTCTGGACTAGTCCCTTCTTATCTTTCAAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTACTGGCAACATTTTCTGGACTAGTCCCTTCTTATCTTTCAAAT  1085

seq1  GACATCATAAAACAGGATTTTGCTTTCAGATATAAAGACCTGGAAATTGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATAAAACAGGATTTTGCTTTCAGATATAAAGACCTGGAAATTGC  1135

seq1  ACAGAGCATATAAACATCTTGTTTTCATCTAAGCAACACGCATATGGAAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCATATAAACATCTTGTTTTCATCTAAGCAACACGCATATGGAAA  1185

seq1  TTTCACTTGGCTTGAATTC  1213
      |||||||||||||||||||
seq2  TTTCACTTGGCTTGAATTC  1204


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