BAC Information

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BAC

Clone NameB6Ng01-077O17
Chromosome5 (Build37)2 (Build37)
Map Location 14,539,920 - 14,540,96974,848,556 - 74,848,623
singlet/doubletsingletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077O17.bB6Ng01-077O17.g
ACCDH893767DH893768
length1,042384
definitionDH893767|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O17, 5' end.DH893768|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,539,920 - 14,540,969)(74,848,556 - 74,848,623)
sequence
gaattcaaaatagcatgtggatgaaataattttacctcctctgacctatc
aagattcattcctttccttcagaagaaacatacttcgttgctcaggaatt
caggtccccaaacattcagaataaactgctgtagattttcattcctatgt
aacccaggtagtgcttacctcagtcaggtggggcgttgggttaaatccac
agagattgcaaacttgattcttgcattctgtgcaggtgttgaagttggga
ggatcctgagaccctacgttgagttccgttctgcagagaggacaggccgg
tttgggtttggtggtcttgtctggcttctgggcgaggacggccttctcgg
gctctgtaggtggaggtttgctgaccttcccaggtgggggcttcttgtct
ttctctgccttcttcactgttggagcttgcacaggtttggcctctaagtt
ttcagctgccgggccttttgtttccttcttcacagcagtcgtcttggcag
gtgctgatgggtgcggacctgtggacttgggtggtccctgagcagccaga
gtctgggatgggggaggggcttgctttgatggggcagctggcccagtctg
tggatgaggtgcttgctgacctgctgtggaaattaagtttgatgcttggc
taaagatggatgctccgaacccgaatagcttccctgtcacagtttcttga
ggagttgtgggctgtgatttgggggcatcagcgataccccccagattcaa
actgaaccgtcttgactgctccggaggcttcgggggctgctgagactggg
gtgtggcttggccagtcgtaggtcgtgtgccagacggtgttggggatcct
tttggtactggctttgtatctggttaggggtcaccttgggttgtgctttc
taagctcctccttcttctgactggatccttgctctcagagtgggcccagg
atgggaaacaattttgagtctgatgcaggcttggcatggctttaaaatca
attggggtatttgatctcctgctggtgggaactctgggaagt
catgtaagtgtgtttctaggtatagggagttaagccttaataatggggat
gggcttaggtgggactgacagagtccccaggaggaagaaaaccagggtat
tccatcaggatctgcttggtaacctgagaattgtgccaaagcataagaaa
ggccacaataggtagtttgctacagacctggcaatgagactcagggattg
gatatgaaagagaggaacgggaatgatctgaagcagtcttacatacatgg
tttgcgtacttgctcctccgacagccttgactggcaggttctaagagaga
gccttctggagttggggtctgggataataggatgactgatgaaagtttga
ggagattttgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14539920_14540969
seq2: B6Ng01-077O17.b_47_1088 (reverse)

seq1  ACTTCACAGAGTTTCCCACCAACAGGAGATACAATTACCCCACTTGATTC  50
      ||||| ||||| ||||||||| |||||||| ||| ||||||| |||||| 
seq2  ACTTCCCAGAG-TTCCCACCAGCAGGAGAT-CAAATACCCCAATTGATTT  48

seq1  TAAAGCCATGCCCAGGCCTGCATCAGACTCAAAAATTGTTTCACATCCTG  100
      |||||||||| ||| ||||||||||||||| ||||||||||| |||||||
seq2  TAAAGCCATG-CCAAGCCTGCATCAGACTC-AAAATTGTTTCCCATCCTG  96

seq1  GGCCCACTTCTGAGAGCAAGGATCCAGTTCAGAAGAAGGAGGAGCCTAAG  150
      ||||||| ||||||||||||||||||| |||||||||||||||| || ||
seq2  GGCCCAC-TCTGAGAGCAAGGATCCAG-TCAGAAGAAGGAGGAG-CTTAG  143

seq1  AAAGCACAAACCAAGGTGACCCCTAAACCAGATACAAAGCCAGTACCAAA  200
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AAAGCACAACCCAAGGTGACCCCT-AACCAGATACAAAGCCAGTACCAAA  192

seq1  AGGATCCCCAACACCGTCTGGCACACGACCTACGACTGGCCAAGCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCCAACACCGTCTGGCACACGACCTACGACTGGCCAAGCCACAC  242

seq1  CCCAGTCTCAGCAGCCCCCGAAGCCTCCGGAGCAGTCAAGACGGTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTCAGCAGCCCCCGAAGCCTCCGGAGCAGTCAAGACGGTTCAGT  292

seq1  TTGAATCTGGGGGGTATCGCTGATGCCCCCAAATCACAGCCCACAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGGGGGGTATCGCTGATGCCCCCAAATCACAGCCCACAACTCC  342

seq1  TCAAGAAACTGTGACAGGGAAGCTATTCGGGTTCGGAGCATCCATCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAACTGTGACAGGGAAGCTATTCGGGTTCGGAGCATCCATCTTTA  392

seq1  GCCAAGCATCAAACTTAATTTCCACAGCAGGTCAGCAAGCACCTCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCATCAAACTTAATTTCCACAGCAGGTCAGCAAGCACCTCATCCA  442

seq1  CAGACTGGGCCAGCTGCCCCATCAAAGCAAGCCCCTCCCCCATCCCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGCCAGCTGCCCCATCAAAGCAAGCCCCTCCCCCATCCCAGAC  492

seq1  TCTGGCTGCTCAGGGACCACCCAAGTCCACAGGTCCGCACCCATCAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGCTCAGGGACCACCCAAGTCCACAGGTCCGCACCCATCAGCAC  542

seq1  CTGCCAAGACGACTGCTGTGAAGAAGGAAACAAAAGGCCCGGCAGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGACGACTGCTGTGAAGAAGGAAACAAAAGGCCCGGCAGCTGAA  592

seq1  AACTTAGAGGCCAAACCTGTGCAAGCTCCAACAGTGAAGAAGGCAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAGGCCAAACCTGTGCAAGCTCCAACAGTGAAGAAGGCAGAGAA  642

seq1  AGACAAGAAGCCCCCACCTGGGAAGGTCAGCAAACCTCCACCTACAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAGCCCCCACCTGGGAAGGTCAGCAAACCTCCACCTACAGAGC  692

seq1  CCGAGAAGGCCGTCCTCGCCCAGAAGCCAGACAAGACCACCAAACCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAAGGCCGTCCTCGCCCAGAAGCCAGACAAGACCACCAAACCCAAA  742

seq1  CCGGCCTGTCCTCTCTGCAGAACGGAACTCAACGTAGGGTCTCAGGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTGTCCTCTCTGCAGAACGGAACTCAACGTAGGGTCTCAGGATCC  792

seq1  TCCCAACTTCAACACCTGCACAGAATGCAAGAATCAAGTTTGCAATCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTTCAACACCTGCACAGAATGCAAGAATCAAGTTTGCAATCTCT  842

seq1  GTGGATTTAACCCAACGCCCCACCTGACTGAGGTAAGCACTACCTGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTAACCCAACGCCCCACCTGACTGAGGTAAGCACTACCTGGGTT  892

seq1  ACATAGGAATGAAAATCTACAGCAGTTTATTCTGAATGTTTGGGGACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAATGAAAATCTACAGCAGTTTATTCTGAATGTTTGGGGACCTG  942

seq1  AATTCCTGAGCAACGAAGTATGTTTCTTCTGAAGGAAAGGAATGAATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAGCAACGAAGTATGTTTCTTCTGAAGGAAAGGAATGAATCTT  992

seq1  GATAGGTCAGAGGAGGTAAAATTATTTCATCCACATGCTATTTTGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTCAGAGGAGGTAAAATTATTTCATCCACATGCTATTTTGAATTC  1042

seq1: chr2_74848556_74848623
seq2: B6Ng01-077O17.g_425_459 (reverse)

seq1  CACACACACACACACACACCTTCTGTGTCTAGGAAAGATTGTAGGCAAAG  50
      |||||||||||||||||||                               
seq2  CACACACACACACACACAC-------------------------------  19

seq1  GAACACACAAAATCTCCT  68
        ||||||||||||||||
seq2  --ACACACAAAATCTCCT  35