BAC Information

Click to search

BAC

Clone NameB6Ng01-077O20
Chromosome2 (Build37)
Map Location 154,041,184 - 154,197,446
singlet/doubletdoublet
Overlap geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1
Upstream geneTspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik
Downstream geneSnta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077O20.bB6Ng01-077O20.g
ACCDH893773DH893774
length1,145346
definitionDH893773|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O20, 5' end.DH893774|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,196,313 - 154,197,446)(154,041,184 - 154,041,529)
sequence
gaattctttctactgtgtggctttcagggagtcaggcttggtggcaggtg
ccttcatccactaagccatgtcactgagccgcctttatttattttcacct
gtaaattagagatataatatattttaagagccctcactgttgtccaggca
gtcctgggctcaaatgatcttcctgccttagcctcccaggttactgggaa
tataggtttaccatgtttagattaaggtaaactatcataaaacgtacctt
aagggaggtggtggtgcacaccttaaatctcagcactcaggaggcagaga
caggctgatctctgagtttcaggccagcctggtctacagtgcaagttcta
ggacagtcagagctatacagagaaaccctgtcaaaacaaaacaaaacaaa
acaaaacaaaacaaaacagtaccttggaactgggttgtgattctggcatt
tggaagactgaggtgagaggaatgagaaaagttggaggtcagtatggact
tcataggaagatctcaaaaaacaaacaaacaaacaaacaaacctaacctc
acataacctcacaatctgcccagcctggactacgtaggaagttgagttcc
aggccagcccagaataatcctgagattaagtctcaacatctcttatgagc
cctgctccccccaaaaagcatttttctgttttagcgaggaggagtgtcca
gagcagtcctgtatggagtgtgccgtaaatactggtgtgtttcattcctt
tgcagatttggggctgcaggtgccatgcatcctttacggtgtgtcctcca
agtacagaggttgtcagcaccattcacctccatgtgctgggtgttgctta
ggacctgcagagcacaaagcagtgtgtccagcactcccttgtcccagtcc
agaggcgaagagctcagaagctcagatgacttcagctccaggctagccac
tggaccgacttttcagcattttttaagaagtgcttcagttcctcagagaa
acatcttctccagaggttggagacccaccttcctatctctcggggatgac
tttctaggaagcagagaaaaggttggcctttattttttccctttggcttc
cttgctccactgcagccctctgtagccggatggctctgcctgatt
caaacagaagaatgaagggactctacaggagccacagaacaaggaaaccc
caccactgggatggcctgcacgcatcaccccaggcttcaaactgcccatt
ctgaaaaatttcaagacaaaagctataacagcctagatactaaacccttg
ggacccagcattgaagtggtctctgcacccctgccagtcctgcaaggtct
accaccttctgtcccagactgagttcagtgactccaactggaggctccag
caataaagttaggctcaggagaacattctgatctgcctgtacagggtgag
ataatagctaggtataaatagatggatgggtggatggatggatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154196313_154197446
seq2: B6Ng01-077O20.b_48_1192 (reverse)

seq1  -------------AATCAGGCCACAGA-GGCTGCAGTGGAGCAAGGAAGC  36
                    ||| ||| ||||| ||||||||||||||||||||||
seq2  AATCAGGCAGAGCCATCCGGCTACAGAGGGCTGCAGTGGAGCAAGGAAGC  50

seq1  CAAAGGGAAAAAATAAA-GCCAACCTTTTCTCTGCCTTCCTAGAAGTTCA  85
      ||||||||||||||||| |||||||||||||||| ||||||||||  |||
seq2  CAAAGGGAAAAAATAAAGGCCAACCTTTTCTCTG-CTTCCTAGAAAGTCA  99

seq1  TCCCCCGAGAGATAGGGAGGTGGGTCCTCCACCTCTGGAGAAGATGGTTT  135
      | |||||||||||||| |||||||||  | ||||||||||||||| ||||
seq2  T-CCCCGAGAGATAGGAAGGTGGGTCTCCAACCTCTGGAGAAGAT-GTTT  147

seq1  CTCTTGAGGAACTGAAGCACTTCTTAAAAAATGCTGAAAAGTCGGTCCAG  185
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-TGAGGAACTGAAGCACTTCTTAAAAAATGCTGAAAAGTCGGTCCAG  196

seq1  TGGCTAGCCTGGAGCTGAAGTCCTTCTGAGCTTCTGAGCTCTTCGCCTCT  235
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  TGGCTAGCCTGGAGCTGAAGT-CATCTGAGCTTCTGAGCTCTTCGCCTCT  245

seq1  GGACTGGGACAA-GGAGTGCTGGACACACTGCTTTGTGCTCTGCAGGTCC  284
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGACAAGGGAGTGCTGGACACACTGCTTTGTGCTCTGCAGGTCC  295

seq1  TAAGCAACACCCAGCACATGGAGGTGAATGGTGCTGACAACCTCTGTACT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACACCCAGCACATGGAGGTGAATGGTGCTGACAACCTCTGTACT  345

seq1  TGGAGGACACACCGTAAAGGATGCATGGCACCTGCAGCCCCAAATCTGCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACACACCGTAAAGGATGCATGGCACCTGCAGCCCCAAATCTGCA  395

seq1  AAGGAATGAAACACACCAGTATTTACGGCACACTCCATACAGGACTGCTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAAACACACCAGTATTTACGGCACACTCCATACAGGACTGCTC  445

seq1  TGGACACTCCTCCTCGCTAAAACAGAAAAATGCTTTTTGGGGGGAGCAGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTCCTCCTCGCTAAAACAGAAAAATGCTTTTTGGGGGGAGCAGG  495

seq1  GCTCATAAGAGATGTTGAGACTTAATCTCAGGATTATTCTGGGCTGGCCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAGAGATGTTGAGACTTAATCTCAGGATTATTCTGGGCTGGCCT  545

seq1  GGAACTCAACTTCCTACGTAGTCCAGGCTGGGCAGATTGTGAGGTTATGT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAACTTCCTACGTAGTCCAGGCTGGGCAGATTGTGAGGTTATGT  595

seq1  GAGGTTAGGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGATCTTCCTATGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGATCTTCCTATGA  645

seq1  AGTCCATACTGACCTCCAACTTTTCTCATTCCTCTCACCTCAGTCTTCCA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATACTGACCTCCAACTTTTCTCATTCCTCTCACCTCAGTCTTCCA  695

seq1  AATGCCAGAATCACAACCCAGTTCCAAGGTACTGTTTTGTTTTGTTTTGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGAATCACAACCCAGTTCCAAGGTACTGTTTTGTTTTGTTTTGT  745

seq1  TTTGTTTTGTTTTGTTTTGACAGGGTTTCTCTGTATAGCTCTGACTGTCC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGACAGGGTTTCTCTGTATAGCTCTGACTGTCC  795

seq1  TAGAACTTGCACTGTAGACCAGGCTGGCCTGAAACTCAGAGATCAGCCTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTGCACTGTAGACCAGGCTGGCCTGAAACTCAGAGATCAGCCTG  845

seq1  TCTCTGCCTCCTGAGTGCTGAGATTTAAGGTGTGCACCACCACCTCCCTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCCTGAGTGCTGAGATTTAAGGTGTGCACCACCACCTCCCTT  895

seq1  AAGGTACGTTTTATGATAGTTTACCTTAATCTAAACATGGTAAACCTATA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACGTTTTATGATAGTTTACCTTAATCTAAACATGGTAAACCTATA  945

seq1  TTCCCAGTAACCTGGGAGGCTAAGGCAGGAAGATCATTTGAGCCCAGGAC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTAACCTGGGAGGCTAAGGCAGGAAGATCATTTGAGCCCAGGAC  995

seq1  TGCCTGGACAACAGTGAGGGCTCTTAAAATATATTATATCTCTAATTTAC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGACAACAGTGAGGGCTCTTAAAATATATTATATCTCTAATTTAC  1045

seq1  AGGTGAAAATAAATAAAGGCGGCTCAGTGACATGGCTTAGTGGATGAAGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAATAAATAAAGGCGGCTCAGTGACATGGCTTAGTGGATGAAGG  1095

seq1  CACCTGCCACCAAGCCTGACTCCCTGAAAGCCACACAGTAGAAAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCACCAAGCCTGACTCCCTGAAAGCCACACAGTAGAAAGAATTC  1145

seq1: chr2_154041184_154041529
seq2: B6Ng01-077O20.g_74_419

seq1  CAAACAGAAGAATGAAGGGACTCTACAGGAGCCACAGAACAAGGAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAAGAATGAAGGGACTCTACAGGAGCCACAGAACAAGGAAACCC  50

seq1  CACCACTGGGATGGCCTGCACGCATCACCCCAGGCTTCAAACTGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGGGATGGCCTGCACGCATCACCCCAGGCTTCAAACTGCCCATT  100

seq1  CTGAAAAATTTCAAGACAAAAGCTATAACAGCCTAGATACTAAACCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATTTCAAGACAAAAGCTATAACAGCCTAGATACTAAACCCTTG  150

seq1  GGACCCAGCATTGAAGTGGTCTCTGCACCCCTGCCAGTCCTGCAAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGCATTGAAGTGGTCTCTGCACCCCTGCCAGTCCTGCAAGGTCT  200

seq1  ACCACCTTCTGTCCCAGACTGAGTTCAGTGACTCCAACTGGAGGCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTCTGTCCCAGACTGAGTTCAGTGACTCCAACTGGAGGCTCCAG  250

seq1  CAATAAAGTTAGGCTCAGGAGAACATTCTGATCTGCCTGTACAGGGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTTAGGCTCAGGAGAACATTCTGATCTGCCTGTACAGGGTGAG  300

seq1  ATAATAGCTAGGTATAAATAGATGGATGGGTGGATGGATGGATGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCTAGGTATAAATAGATGGATGGGTGGATGGATGGATGGA  346